© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05269 |
| Gene name | |
| Location | scaffold_05:3056298..3058195 |
| Strand | - |
| Gene length (bp) | 1897 |
| Transcript length (bp) | 1578 |
| Coding sequence length (bp) | 1578 |
| Protein length (aa) | 526 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 6.0E-121 | 41 | 489 |
| PF13520 | AA_permease_2 | Amino acid permease | 2.9E-31 | 36 | 448 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
| 2 | 67 | 89 | 22 |
| 3 | 101 | 123 | 22 |
| 4 | 143 | 165 | 22 |
| 5 | 178 | 200 | 22 |
| 6 | 215 | 237 | 22 |
| 7 | 264 | 286 | 22 |
| 8 | 306 | 328 | 22 |
| 9 | 362 | 384 | 22 |
| 10 | 388 | 410 | 22 |
| 11 | 430 | 452 | 22 |
| 12 | 462 | 481 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05269 MNGKHDDDAAEKRDDQPADHGEGIVFARSDRLKRSLSARQVQMIAIGGTIGTGLFLGSGKSLAVGGPASMLLCYA IVGAIVFITMLSLGEMSAFVPVAGSFCSFAGRFVDDAFGFALTWNYWFNDAVSTASDLVALQLLLRYWTVSFPGW ALSLIFWAVLIAVNVASVRAYGELEYWLSLLKIVAIMAFIVVGIVVNVGGNLDGRYIGGENWRLPGGPFVGGIGG FASVFVTASFAYGGTESIAITAGETKNPTKTMPRVVKNVFWRILFFYILSILLIGLDVPYTFPGLNSKTTSTSPF TIVFQMTGAHAAGSVINAVVLSSVLSAGNHALFAAGRLLYTLAIEGHAPSAFARLGANQVPWVAVLASAFVAGLC FASSFVGAGQLWTWLQNIVGVSNQLSWIAIGIASIRFRSGLARQNKTHLLPFRNWTYPWGPWAVVILNSFLVLVQ GWSSFSPRFDPVSFVSLYIELPIMLVMYLSWKGWRRTKVVSLAEMDLETDVHTADEDRVDDKAGHWAKRVATWLV * |
| Coding | >Ophcf2|05269 ATGAACGGGAAACACGACGATGACGCGGCCGAGAAGCGAGACGATCAACCAGCCGATCATGGCGAGGGCATCGTC TTCGCCCGCTCCGACCGCCTCAAACGCTCGCTCTCGGCGCGACAAGTGCAGATGATTGCCATTGGCGGCACCATC GGCACCGGCTTGTTCCTCGGATCCGGCAAGTCGTTGGCGGTGGGAGGGCCGGCTTCCATGTTGCTCTGCTACGCC ATTGTCGGGGCCATCGTCTTCATCACCATGCTGAGCCTGGGCGAGATGTCGGCCTTTGTGCCTGTTGCTGGTAGC TTTTGCTCTTTTGCGGGCCGTTTTGTTGACGATGCTTTTGGCTTTGCGCTTACTTGGAATTACTGGTTCAACGAC GCTGTTTCAACCGCCTCGGATCTCGTCGCCTTGCAGCTTCTACTGCGGTACTGGACCGTTAGCTTTCCAGGTTGG GCATTGAGCCTCATCTTCTGGGCCGTTCTCATCGCCGTAAACGTCGCCAGCGTCCGCGCATACGGCGAGCTCGAA TATTGGCTTAGCCTTCTCAAGATTGTGGCCATCATGGCCTTCATCGTCGTCGGCATAGTTGTCAATGTCGGGGGT AACCTCGACGGTCGATATATCGGGGGCGAGAATTGGAGGCTTCCGGGTGGACCTTTTGTTGGGGGGATTGGGGGG TTCGCGTCGGTGTTTGTGACGGCTTCTTTTGCCTATGGTGGGACTGAGTCCATTGCCATCACCGCTGGGGAGACC AAGAATCCTACCAAGACGATGCCTCGCGTCGTCAAGAACGTCTTCTGGAGGATCCTCTTCTTCTACATCTTGTCC ATCCTCCTCATCGGCCTCGACGTCCCCTACACGTTCCCCGGCCTCAACTCCAAGACGACGAGCACATCACCCTTT ACCATTGTTTTTCAGATGACAGGCGCCCACGCTGCCGGCAGCGTCATCAACGCCGTCGTCTTATCCAGCGTCCTG TCAGCTGGGAACCATGCCCTCTTCGCCGCTGGACGACTGCTGTACACGCTCGCCATCGAGGGGCATGCGCCGAGC GCTTTCGCCAGGCTGGGTGCCAATCAGGTGCCGTGGGTGGCGGTGCTGGCCTCGGCTTTTGTTGCTGGCCTTTGC TTTGCTTCTAGTTTTGTTGGCGCTGGTCAGCTTTGGACTTGGTTGCAGAACATTGTTGGCGTCTCTAATCAGCTC AGCTGGATTGCCATTGGCATCGCCTCGATACGCTTCCGGTCAGGCCTCGCTCGACAGAACAAGACGCATCTGCTA CCCTTTCGCAACTGGACCTATCCATGGGGACCATGGGCCGTCGTCATCCTCAATAGTTTTCTTGTGCTCGTTCAG GGATGGAGCTCCTTCAGTCCCAGGTTTGACCCCGTCAGCTTCGTCAGCTTGTACATTGAGCTGCCCATCATGCTG GTCATGTATCTGTCCTGGAAGGGCTGGCGACGGACCAAGGTCGTGAGTCTGGCAGAGATGGACCTCGAGACGGAC GTTCATACGGCGGACGAGGATCGCGTTGATGACAAGGCTGGGCATTGGGCCAAGCGCGTGGCTACCTGGCTGGTT TGA |
| Transcript | >Ophcf2|05269 ATGAACGGGAAACACGACGATGACGCGGCCGAGAAGCGAGACGATCAACCAGCCGATCATGGCGAGGGCATCGTC TTCGCCCGCTCCGACCGCCTCAAACGCTCGCTCTCGGCGCGACAAGTGCAGATGATTGCCATTGGCGGCACCATC GGCACCGGCTTGTTCCTCGGATCCGGCAAGTCGTTGGCGGTGGGAGGGCCGGCTTCCATGTTGCTCTGCTACGCC ATTGTCGGGGCCATCGTCTTCATCACCATGCTGAGCCTGGGCGAGATGTCGGCCTTTGTGCCTGTTGCTGGTAGC TTTTGCTCTTTTGCGGGCCGTTTTGTTGACGATGCTTTTGGCTTTGCGCTTACTTGGAATTACTGGTTCAACGAC GCTGTTTCAACCGCCTCGGATCTCGTCGCCTTGCAGCTTCTACTGCGGTACTGGACCGTTAGCTTTCCAGGTTGG GCATTGAGCCTCATCTTCTGGGCCGTTCTCATCGCCGTAAACGTCGCCAGCGTCCGCGCATACGGCGAGCTCGAA TATTGGCTTAGCCTTCTCAAGATTGTGGCCATCATGGCCTTCATCGTCGTCGGCATAGTTGTCAATGTCGGGGGT AACCTCGACGGTCGATATATCGGGGGCGAGAATTGGAGGCTTCCGGGTGGACCTTTTGTTGGGGGGATTGGGGGG TTCGCGTCGGTGTTTGTGACGGCTTCTTTTGCCTATGGTGGGACTGAGTCCATTGCCATCACCGCTGGGGAGACC AAGAATCCTACCAAGACGATGCCTCGCGTCGTCAAGAACGTCTTCTGGAGGATCCTCTTCTTCTACATCTTGTCC ATCCTCCTCATCGGCCTCGACGTCCCCTACACGTTCCCCGGCCTCAACTCCAAGACGACGAGCACATCACCCTTT ACCATTGTTTTTCAGATGACAGGCGCCCACGCTGCCGGCAGCGTCATCAACGCCGTCGTCTTATCCAGCGTCCTG TCAGCTGGGAACCATGCCCTCTTCGCCGCTGGACGACTGCTGTACACGCTCGCCATCGAGGGGCATGCGCCGAGC GCTTTCGCCAGGCTGGGTGCCAATCAGGTGCCGTGGGTGGCGGTGCTGGCCTCGGCTTTTGTTGCTGGCCTTTGC TTTGCTTCTAGTTTTGTTGGCGCTGGTCAGCTTTGGACTTGGTTGCAGAACATTGTTGGCGTCTCTAATCAGCTC AGCTGGATTGCCATTGGCATCGCCTCGATACGCTTCCGGTCAGGCCTCGCTCGACAGAACAAGACGCATCTGCTA CCCTTTCGCAACTGGACCTATCCATGGGGACCATGGGCCGTCGTCATCCTCAATAGTTTTCTTGTGCTCGTTCAG GGATGGAGCTCCTTCAGTCCCAGGTTTGACCCCGTCAGCTTCGTCAGCTTGTACATTGAGCTGCCCATCATGCTG GTCATGTATCTGTCCTGGAAGGGCTGGCGACGGACCAAGGTCGTGAGTCTGGCAGAGATGGACCTCGAGACGGAC GTTCATACGGCGGACGAGGATCGCGTTGATGACAAGGCTGGGCATTGGGCCAAGCGCGTGGCTACCTGGCTGGTT TGA |
| Gene | >Ophcf2|05269 ATGAACGGGAAACACGACGATGACGCGGCCGAGAAGCGAGACGATCAACCAGCCGATCATGGCGAGGGCATCGTC TTCGCCCGCTCCGACCGCCTCAAACGCTCGCTCTCGGCGCGACAAGTGCAGATGATTGCCATTGGCGGCACCATC GGCACCGGCTTGTTCCTCGGATCCGGCAAGTCGTTGGCGGTGGGAGGGCCGGCTTCCATGTTGCTCTGCTACGCC ATTGTCGGGGCCATCGTCTTCATCACCATGCTGAGCCTGGGCGAGATGTCGGCCTTTGTGCCTGTTGCTGGTAGC TTTTGCTCTTTTGCGGGGTGGGTTAGAAGAGAGAGAGAGAGGAGGGGATGATGGAGAGTCGCAGGGGCTGATGTC GCTTTCAGCCGTTTTGTTGACGATGCTTTTGGCTTTGCGCTTACTTGGAATTACTGGTTCAACGACGCTGTTTCA ACCGCCTCGGATCTCGTCGCCTTGCAGCTTCTACTGCGGTACTGGACCGTTAGCTTTCCAGGTTGGGCATTGAGC CTCATCTTCTGGGCCGTTCTCATCGCCGTAAACGTCGCCAGCGTCCGCGCATACGGCGAGCTCGAATATTGGCTT AGCCTTCTCAAGATTGTGGCCATCATGGTACGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTGAA CTTGTTGATCGACGGCTGATGTGCCATGCCTTTAGGCCTTCATCGTCGTCGGCATAGTTGTCAATGTCGGGGGTA ACCTCGACGGTCGATATATCGGGGGCGAGAATTGGAGGCTTCCGGGTGGACCTTTTGTTGGGGGGATTGGGGGGT TCGCGTCGGTGTTTGTGACGGCTTCTTTTGCCTGTGGGTTGTGGGCTTTCCTCTTTGCTTTCTTTACTGACATGG TGGTGGTTTGTTTTGCAGATGGTGGGACTGAGTCCATTGCCATCACCGCTGGGGAGACCAAGAATCCTACCAAGA CGATGCCTCGCGTCGTCAAGAACGTCTTCTGGAGGATCCTCTTCTTCTAGTACGATACGCCCGCTCACATCTCCA AAACCAGGCTGATGTCAAATGTTTCCAGCATCTTGTCCATCCTCCTCATCGGCCTCGACGTCCCCTACACGTTCC CCGGCCTCAACTCCAAGACGACGAGCACATCACCCTTTACCATTGTTTTTCAGATGACAGGCGCCCACGCTGCCG GCAGCGTCATCAACGCCGTCGTCTTATCCAGCGTCCTGTCAGCTGGGAACCATGCCCTCTTCGCCGCTGGACGAC TGCTGTACACGCTCGCCATCGAGGGGCATGCGCCGAGCGCTTTCGCCAGGCTGGGTGCCAATCAGGTGCCGTGGG TGGCGGTGCTGGCCTCGGCTTTTGTTGCTGGCCTTTGCTTTGCTTCTAGTTTTGTTGGCGCTGGTCAGCTTTGGA CTTGGTTGCAGAAGTAGGTCAAAGACCGAGCTCTCTCGGTCGGAAAGGAACTCTGACGGGATTTGACAGCATTGT TGGCGTCTCTAATCAGCTCAGCTGGATTGCCATTGGCATCGCCTCGATACGCTTCCGGTCAGGCCTCGCTCGACA GAACAAGACGCATCTGCTACCCTTTCGCAACTGGACCTATCCATGGGGACCATGGGCCGTCGTCATCCTCAATAG TTTTCTTGTGCTCGTTCAGGGATGGAGCTCCTTCAGTCCCAGGTTTGACCCCGTCAGCTTCGTCAGCTTGTACAT TGAGCTGCCCATCATGCTGGTCATGTATCTGTCCTGGAAGGGCTGGCGACGGACCAAGGTCGTGAGTCTGGCAGA GATGGACCTCGAGACGGACGTTCATACGGCGGACGAGGATCGCGTTGATGACAAGGCTGGGCATTGGGCCAAGCG CGTGGCTACCTGGCTGGTTTGA |