© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05227 |
| Gene name | |
| Location | scaffold_05:2830861..2831651 |
| Strand | - |
| Gene length (bp) | 790 |
| Transcript length (bp) | 714 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 1.1E-56 | 23 | 225 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 31 | 53 | 22 |
| 2 | 66 | 84 | 18 |
| 3 | 94 | 116 | 22 |
| 4 | 129 | 151 | 22 |
| 5 | 156 | 178 | 22 |
| 6 | 191 | 213 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 64.26 | 33.1 | 95.43 |
| Alive | In ants, during behavior modification | 41.75 | 18.7 | 64.80 |
| Dead | In ants, recently dead | 38.84 | 18.0 | 59.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.053979 | no |
| Alive | Dead | 0.773499 | no |
| Dead | Fungus | 0.023838 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05227 MVDSAEVKPHQATVSQVRDPRFFRLGNPGPLGLISFALTTFVLSLYLCGAGLPDGNPLGAVGPDQVILGLAIFLG GAAQFTAGIMEFRVGNTFGTTVHCSYGAFWLAFAMLRVPQLGIKEAYKGDERAFSFAIGIMLILWSFLTILFVMA ALRTNLAILVVLILLVLAFFFLALGQFLSTEHLVAARRLTRAGGIFGALCALGAFYAGGAGLMTEETTWVRFPLG EFAYGRVRGEVV* |
| Coding | >Ophcf2|05227 ATGGTTGACTCGGCTGAAGTCAAGCCGCATCAGGCGACCGTCTCGCAGGTTCGCGATCCGCGATTCTTCCGCTTG GGGAATCCGGGTCCGTTGGGACTCATTAGCTTTGCGCTCACGACTTTTGTGCTGAGTCTTTATCTCTGTGGCGCT GGGCTTCCTGATGGGAATCCGCTTGGAGCTGTTGGTCCGGATCAGGTCATTCTTGGCCTTGCCATCTTCCTTGGC GGCGCGGCGCAATTCACGGCTGGAATCATGGAGTTTCGCGTGGGGAACACGTTCGGGACGACGGTTCACTGCTCG TACGGCGCCTTCTGGCTTGCCTTTGCCATGCTTCGCGTTCCCCAGCTCGGCATCAAGGAAGCATACAAAGGCGAC GAGCGAGCCTTTAGCTTCGCAATCGGAATCATGCTCATCCTCTGGTCCTTCCTAACCATCCTCTTCGTCATGGCC GCCCTACGCACCAACCTCGCCATCCTTGTCGTTCTCATCCTCCTCGTCTTGGCCTTCTTCTTCCTCGCCCTGGGT CAGTTCCTTTCCACGGAGCATCTTGTTGCTGCGAGGCGGCTTACGCGTGCGGGGGGGATCTTTGGTGCGCTTTGT GCGCTGGGGGCTTTTTATGCGGGGGGCGCGGGGCTGATGACGGAGGAGACGACTTGGGTGCGTTTTCCGCTGGGG GAGTTTGCGTATGGGAGGGTTAGGGGTGAGGTTGTGTGA |
| Transcript | >Ophcf2|05227 ATGGTTGACTCGGCTGAAGTCAAGCCGCATCAGGCGACCGTCTCGCAGGTTCGCGATCCGCGATTCTTCCGCTTG GGGAATCCGGGTCCGTTGGGACTCATTAGCTTTGCGCTCACGACTTTTGTGCTGAGTCTTTATCTCTGTGGCGCT GGGCTTCCTGATGGGAATCCGCTTGGAGCTGTTGGTCCGGATCAGGTCATTCTTGGCCTTGCCATCTTCCTTGGC GGCGCGGCGCAATTCACGGCTGGAATCATGGAGTTTCGCGTGGGGAACACGTTCGGGACGACGGTTCACTGCTCG TACGGCGCCTTCTGGCTTGCCTTTGCCATGCTTCGCGTTCCCCAGCTCGGCATCAAGGAAGCATACAAAGGCGAC GAGCGAGCCTTTAGCTTCGCAATCGGAATCATGCTCATCCTCTGGTCCTTCCTAACCATCCTCTTCGTCATGGCC GCCCTACGCACCAACCTCGCCATCCTTGTCGTTCTCATCCTCCTCGTCTTGGCCTTCTTCTTCCTCGCCCTGGGT CAGTTCCTTTCCACGGAGCATCTTGTTGCTGCGAGGCGGCTTACGCGTGCGGGGGGGATCTTTGGTGCGCTTTGT GCGCTGGGGGCTTTTTATGCGGGGGGCGCGGGGCTGATGACGGAGGAGACGACTTGGGTGCGTTTTCCGCTGGGG GAGTTTGCGTATGGGAGGGTTAGGGGTGAGGTTGTGTGA |
| Gene | >Ophcf2|05227 ATGGTTGACTCGGCTGAAGTCAAGCCGCATCAGGCGACCGTCTCGCAGGTTCGCGATCCGCGATTCTTCCGCTTG GGGAATCCGGGTCCGTTGGGACTCATTAGCTTTGCGCTCACGACTTTTGTGCTGAGTCTTTATCTCTGTGGCGCT GGGTATGATTTCCTTCTTCCCTCTTCCCCCTTCCATCTTCCCACTCACCTCTTTTCCATTCTCTTTTGACGAGTG TAGGCTTCCTGATGGGAATCCGCTTGGAGCTGTTGGTCCGGATCAGGTCATTCTTGGCCTTGCCATCTTCCTTGG CGGCGCGGCGCAATTCACGGCTGGAATCATGGAGTTTCGCGTGGGGAACACGTTCGGGACGACGGTTCACTGCTC GTACGGCGCCTTCTGGCTTGCCTTTGCCATGCTTCGCGTTCCCCAGCTCGGCATCAAGGAAGCATACAAAGGCGA CGAGCGAGCCTTTAGCTTCGCAATCGGAATCATGCTCATCCTCTGGTCCTTCCTAACCATCCTCTTCGTCATGGC CGCCCTACGCACCAACCTCGCCATCCTTGTCGTTCTCATCCTCCTCGTCTTGGCCTTCTTCTTCCTCGCCCTGGG TCAGTTCCTTTCCACGGAGCATCTTGTTGCTGCGAGGCGGCTTACGCGTGCGGGGGGGATCTTTGGTGCGCTTTG TGCGCTGGGGGCTTTTTATGCGGGGGGCGCGGGGCTGATGACGGAGGAGACGACTTGGGTGCGTTTTCCGCTGGG GGAGTTTGCGTATGGGAGGGTTAGGGGTGAGGTTGTGTGA |