Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05227
Gene name
Locationscaffold_05:2830861..2831651
Strand-
Gene length (bp)790
Transcript length (bp)714
Coding sequence length (bp)714
Protein length (aa) 238

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01184 Gpr1_Fun34_YaaH GPR1/FUN34/yaaH family 1.1E-56 23 225

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 51 0.5

Transmembrane Domains

Domain # Start End Length
1 31 53 22
2 66 84 18
3 94 116 22
4 129 151 22
5 156 178 22
6 191 213 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05227
MVDSAEVKPHQATVSQVRDPRFFRLGNPGPLGLISFALTTFVLSLYLCGAGLPDGNPLGAVGPDQVILGLAIFLG
GAAQFTAGIMEFRVGNTFGTTVHCSYGAFWLAFAMLRVPQLGIKEAYKGDERAFSFAIGIMLILWSFLTILFVMA
ALRTNLAILVVLILLVLAFFFLALGQFLSTEHLVAARRLTRAGGIFGALCALGAFYAGGAGLMTEETTWVRFPLG
EFAYGRVRGEVV*
Coding >Ophcf2|05227
ATGGTTGACTCGGCTGAAGTCAAGCCGCATCAGGCGACCGTCTCGCAGGTTCGCGATCCGCGATTCTTCCGCTTG
GGGAATCCGGGTCCGTTGGGACTCATTAGCTTTGCGCTCACGACTTTTGTGCTGAGTCTTTATCTCTGTGGCGCT
GGGCTTCCTGATGGGAATCCGCTTGGAGCTGTTGGTCCGGATCAGGTCATTCTTGGCCTTGCCATCTTCCTTGGC
GGCGCGGCGCAATTCACGGCTGGAATCATGGAGTTTCGCGTGGGGAACACGTTCGGGACGACGGTTCACTGCTCG
TACGGCGCCTTCTGGCTTGCCTTTGCCATGCTTCGCGTTCCCCAGCTCGGCATCAAGGAAGCATACAAAGGCGAC
GAGCGAGCCTTTAGCTTCGCAATCGGAATCATGCTCATCCTCTGGTCCTTCCTAACCATCCTCTTCGTCATGGCC
GCCCTACGCACCAACCTCGCCATCCTTGTCGTTCTCATCCTCCTCGTCTTGGCCTTCTTCTTCCTCGCCCTGGGT
CAGTTCCTTTCCACGGAGCATCTTGTTGCTGCGAGGCGGCTTACGCGTGCGGGGGGGATCTTTGGTGCGCTTTGT
GCGCTGGGGGCTTTTTATGCGGGGGGCGCGGGGCTGATGACGGAGGAGACGACTTGGGTGCGTTTTCCGCTGGGG
GAGTTTGCGTATGGGAGGGTTAGGGGTGAGGTTGTGTGA
Transcript >Ophcf2|05227
ATGGTTGACTCGGCTGAAGTCAAGCCGCATCAGGCGACCGTCTCGCAGGTTCGCGATCCGCGATTCTTCCGCTTG
GGGAATCCGGGTCCGTTGGGACTCATTAGCTTTGCGCTCACGACTTTTGTGCTGAGTCTTTATCTCTGTGGCGCT
GGGCTTCCTGATGGGAATCCGCTTGGAGCTGTTGGTCCGGATCAGGTCATTCTTGGCCTTGCCATCTTCCTTGGC
GGCGCGGCGCAATTCACGGCTGGAATCATGGAGTTTCGCGTGGGGAACACGTTCGGGACGACGGTTCACTGCTCG
TACGGCGCCTTCTGGCTTGCCTTTGCCATGCTTCGCGTTCCCCAGCTCGGCATCAAGGAAGCATACAAAGGCGAC
GAGCGAGCCTTTAGCTTCGCAATCGGAATCATGCTCATCCTCTGGTCCTTCCTAACCATCCTCTTCGTCATGGCC
GCCCTACGCACCAACCTCGCCATCCTTGTCGTTCTCATCCTCCTCGTCTTGGCCTTCTTCTTCCTCGCCCTGGGT
CAGTTCCTTTCCACGGAGCATCTTGTTGCTGCGAGGCGGCTTACGCGTGCGGGGGGGATCTTTGGTGCGCTTTGT
GCGCTGGGGGCTTTTTATGCGGGGGGCGCGGGGCTGATGACGGAGGAGACGACTTGGGTGCGTTTTCCGCTGGGG
GAGTTTGCGTATGGGAGGGTTAGGGGTGAGGTTGTGTGA
Gene >Ophcf2|05227
ATGGTTGACTCGGCTGAAGTCAAGCCGCATCAGGCGACCGTCTCGCAGGTTCGCGATCCGCGATTCTTCCGCTTG
GGGAATCCGGGTCCGTTGGGACTCATTAGCTTTGCGCTCACGACTTTTGTGCTGAGTCTTTATCTCTGTGGCGCT
GGGTATGATTTCCTTCTTCCCTCTTCCCCCTTCCATCTTCCCACTCACCTCTTTTCCATTCTCTTTTGACGAGTG
TAGGCTTCCTGATGGGAATCCGCTTGGAGCTGTTGGTCCGGATCAGGTCATTCTTGGCCTTGCCATCTTCCTTGG
CGGCGCGGCGCAATTCACGGCTGGAATCATGGAGTTTCGCGTGGGGAACACGTTCGGGACGACGGTTCACTGCTC
GTACGGCGCCTTCTGGCTTGCCTTTGCCATGCTTCGCGTTCCCCAGCTCGGCATCAAGGAAGCATACAAAGGCGA
CGAGCGAGCCTTTAGCTTCGCAATCGGAATCATGCTCATCCTCTGGTCCTTCCTAACCATCCTCTTCGTCATGGC
CGCCCTACGCACCAACCTCGCCATCCTTGTCGTTCTCATCCTCCTCGTCTTGGCCTTCTTCTTCCTCGCCCTGGG
TCAGTTCCTTTCCACGGAGCATCTTGTTGCTGCGAGGCGGCTTACGCGTGCGGGGGGGATCTTTGGTGCGCTTTG
TGCGCTGGGGGCTTTTTATGCGGGGGGCGCGGGGCTGATGACGGAGGAGACGACTTGGGTGCGTTTTCCGCTGGG
GGAGTTTGCGTATGGGAGGGTTAGGGGTGAGGTTGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail