Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|05197
Gene name
Location	scaffold_05:2759704..2761117
Strand	-
Gene length (bp)	1413
Transcript length (bp)	1242
Coding sequence length (bp)	1242
Protein length (aa)	414

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 25	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	14.28	6.13	22.42
Alive	In ants, during behavior modification	245.35	33.40	457.30
Dead	In ants, recently dead	29.24	14.63	43.85

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.000238	yes
Dead	Fungus	0.001409	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|05197 MGAIRAFGTIFFLASSILVTAVVGNPGAGKQIGGLQASMLAEKSPLGIFMRERLQEELGDQLFPPPYADVALDES ILPCAYERRVLSANRKDIRVNITSMIDFEFAPASEAAIIDIMSSTARVDTSHSTWTTESFHRLNESHVYEASLSA GPWSGSVSAEEDGLTRGRSLARMSERDVTMNVATTYLCPPRTLCRVETWTYSASIRGNSTLVPMVDAQCYEAWAR KTYVGFPPDYETDHVDFEAGGGWLYVYYAFRRLFRLDSRIMLTNLSIPSVHKQVPQWSDFGAPYYSISKLSSPSV PVRKHGERGDSTADFFQVLPSNFENDVWWADENKYDVRFSKHVHDVIRIPTLHYDGSPKRTQVMLEIPIPSLKRN GERLHNKGRRGAKAKRELSRDGGLGRGVRVKLLWTDVL*
Coding	>Ophcf2\|05197 ATGGGCGCCATAAGAGCATTCGGCACCATCTTCTTCCTCGCCAGCTCCATCCTCGTAACGGCCGTCGTGGGGAAC CCTGGAGCCGGCAAGCAGATTGGCGGTCTGCAGGCGTCAATGCTCGCCGAGAAGTCGCCTCTGGGTATCTTCATG AGGGAGAGGCTGCAGGAAGAGCTGGGAGACCAGCTGTTTCCTCCGCCGTACGCCGACGTCGCTCTGGATGAGAGC ATCTTGCCCTGCGCGTATGAGCGTCGGGTCCTCAGTGCGAACCGCAAAGACATTCGGGTTAATATCACGTCGATG ATAGACTTTGAATTTGCCCCGGCTTCGGAGGCGGCCATCATCGACATCATGAGCTCGACTGCTCGCGTTGATACT AGTCACTCGACTTGGACGACCGAGTCATTTCACCGTCTGAACGAGAGCCATGTATACGAGGCTAGCTTGAGCGCA GGACCTTGGTCAGGGTCTGTCAGTGCCGAAGAGGACGGCCTCACGCGCGGACGGAGCCTGGCCCGGATGTCGGAG AGAGACGTCACCATGAACGTGGCTACGACTTACCTCTGTCCGCCCAGGACGCTGTGCAGAGTCGAGACGTGGACG TACAGCGCGTCCATCAGGGGTAACTCGACGCTTGTTCCCATGGTTGACGCTCAGTGTTACGAGGCTTGGGCAAGG AAGACGTACGTTGGCTTTCCGCCCGACTATGAGACGGATCATGTCGACTTCGAGGCCGGCGGAGGCTGGCTCTAC GTCTACTATGCCTTCCGGAGGCTCTTTCGGCTGGACTCGAGAATCATGCTCACCAACCTTTCGATCCCCTCGGTT CACAAACAGGTTCCGCAGTGGTCCGACTTCGGGGCCCCTTACTACAGCATTTCCAAGCTCAGCAGCCCCAGTGTT CCGGTCCGAAAACACGGCGAGAGAGGCGATTCAACAGCCGATTTCTTCCAGGTGCTACCCTCCAACTTCGAGAAC GACGTCTGGTGGGCCGACGAGAACAAGTACGACGTCAGATTCAGCAAGCATGTTCACGACGTGATTCGCATCCCG ACGCTGCACTACGACGGTAGCCCGAAGCGGACGCAGGTTATGCTCGAGATTCCGATCCCGAGTCTGAAGCGGAAT GGCGAGAGGCTTCATAACAAGGGGCGTAGAGGTGCCAAGGCTAAGAGGGAGCTTTCGAGGGATGGGGGTCTGGGT AGGGGCGTTAGGGTCAAGTTGCTCTGGACTGATGTCTTGTAG
Transcript	>Ophcf2\|05197 ATGGGCGCCATAAGAGCATTCGGCACCATCTTCTTCCTCGCCAGCTCCATCCTCGTAACGGCCGTCGTGGGGAAC CCTGGAGCCGGCAAGCAGATTGGCGGTCTGCAGGCGTCAATGCTCGCCGAGAAGTCGCCTCTGGGTATCTTCATG AGGGAGAGGCTGCAGGAAGAGCTGGGAGACCAGCTGTTTCCTCCGCCGTACGCCGACGTCGCTCTGGATGAGAGC ATCTTGCCCTGCGCGTATGAGCGTCGGGTCCTCAGTGCGAACCGCAAAGACATTCGGGTTAATATCACGTCGATG ATAGACTTTGAATTTGCCCCGGCTTCGGAGGCGGCCATCATCGACATCATGAGCTCGACTGCTCGCGTTGATACT AGTCACTCGACTTGGACGACCGAGTCATTTCACCGTCTGAACGAGAGCCATGTATACGAGGCTAGCTTGAGCGCA GGACCTTGGTCAGGGTCTGTCAGTGCCGAAGAGGACGGCCTCACGCGCGGACGGAGCCTGGCCCGGATGTCGGAG AGAGACGTCACCATGAACGTGGCTACGACTTACCTCTGTCCGCCCAGGACGCTGTGCAGAGTCGAGACGTGGACG TACAGCGCGTCCATCAGGGGTAACTCGACGCTTGTTCCCATGGTTGACGCTCAGTGTTACGAGGCTTGGGCAAGG AAGACGTACGTTGGCTTTCCGCCCGACTATGAGACGGATCATGTCGACTTCGAGGCCGGCGGAGGCTGGCTCTAC GTCTACTATGCCTTCCGGAGGCTCTTTCGGCTGGACTCGAGAATCATGCTCACCAACCTTTCGATCCCCTCGGTT CACAAACAGGTTCCGCAGTGGTCCGACTTCGGGGCCCCTTACTACAGCATTTCCAAGCTCAGCAGCCCCAGTGTT CCGGTCCGAAAACACGGCGAGAGAGGCGATTCAACAGCCGATTTCTTCCAGGTGCTACCCTCCAACTTCGAGAAC GACGTCTGGTGGGCCGACGAGAACAAGTACGACGTCAGATTCAGCAAGCATGTTCACGACGTGATTCGCATCCCG ACGCTGCACTACGACGGTAGCCCGAAGCGGACGCAGGTTATGCTCGAGATTCCGATCCCGAGTCTGAAGCGGAAT GGCGAGAGGCTTCATAACAAGGGGCGTAGAGGTGCCAAGGCTAAGAGGGAGCTTTCGAGGGATGGGGGTCTGGGT AGGGGCGTTAGGGTCAAGTTGCTCTGGACTGATGTCTTGTAG
Gene	>Ophcf2\|05197 ATGGGCGCCATAAGAGCATTCGGCACCATCTTCTTCCTCGCCAGCTCCATCCTCGTAACGGCCGTCGTGGGGAAC CCTGGAGCCGGCAAGCAGATTGGCGGTCTGCAGGCGTCAATGCTCGCCGAGAAGTCGCCTCTGGGTATCTTCATG AGGGAGAGGCTGCAGGAAGAGCTGGGAGACCAGCTGTTTCCTCCGCCGTACGCCGACGTCGCTCTGGATGAGAGC ATCTTGCCCTGCGCGTATGAGCGTCGGGTCCTCAGTGCGAACCGCAAAGACATTCGGGTTAATATCACGTCGATG ATAGACTTTGAATTTGCCCCGGCTTCGGAGGCGGCCATCATCGACATCATGAGCTCGACTGCTCGCGTTGATACT AGTCACTCGACTTGGACGACCGAGTCATTTCACCGTCTGAACGAGAGCCATGTATACGAGGCTAGCTTGAGCGCA GGACCTTGGTCAGGGTCTGTCAGTGCCGAAGAGGACGGCCTCACGCGCGGACGGAGCCTGGCCCGGATGTCGGAG AGAGACGTCACCATGAACGTGGCTACGACTTACCTCTGTCCGCCCAGGACGCTGTGCAGAGTCGAGACGTGGACG TACAGCGCGTCCATCAGGGGTAACTCGACGCTTGTTCCCATGGTTGACGCTCAGTGTTACGAGGCTTGGGCAAGG AAGACGTACGTTGGCTTTCCGCCCGACTATGAGACGGATCATGTCGACTTCGAGGCCGGCGGAGGCTGGCTCTAC GTCTACTATGCCTTCCGGAGGCTCTTTCGGCTGGACTCGAGAATCATGCTCACCAACCTTTCGATCCCCTCGGTT CACAAACAGGTTCCGCAGTGGTCCGACTTCGGGGCCCCTTACTACAGCATTTCCAAGCTCAGCAGCCCCAGTGTT CCGGTCCGAAAACACGGCGAGAGAGGCGATTCAACAGCCGATTTCTTCCAGGTGCTACCCTCCAACTTCGAGAAC GACGTCTGGTGGGCCGACGAGAACAAGTACGACGTCAGATTCAGCAAGCATGTTCACGACGTGATTCGCATCCCG ACGCTGCACTACGACGGTAGCCCGAAGCGGACGCAGGTTATGCTCGAGATTCCGATCCCGAGTCTGAAGCGGAAT GGCGAGAGGCTTCATAACAAGGGGCGTAGAGGTGCCAAGGCTAAGAGGGAGCTTTCGAGGGATGGGGGTCTGGGT AGGGGCGTTAGGGTCAAGTTGCTCTGGACTGATGTCTGTAAGCAAGGGAGTCGGAAGGAGGATCGGCGGGATTGC GGATGGGGGAGGGGAGGGTTTAGGGGTTGGTTGTTGACGTCGTGTTGACTGAGCAAGTCTTTGGCTGTGAAGGAA GGGGAGCTTTGGGGTTGTTAGAGGCTGTTGGCTTGATGACACTGTTGCCGTCTTTAAGTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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