Protein ID | Ophcf2|05163 |
Gene name | |
Location | scaffold_05:2661752..2663303 |
Strand | - |
Gene length (bp) | 1551 |
Transcript length (bp) | 1413 |
Coding sequence length (bp) | 1413 |
Protein length (aa) | 471 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.1382 | 0.2416 | 0.2085 | 0.1133 | 0.0911 | 0.0066 | 0.4845 | 0.2098 | 0.8917 | 0.0229 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 13 | 32 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 5778 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|05163 MMGFSRCVPRRPVVLVSVSLLFSFLVLRLLVTHDSSSWHRLGINRQSQQPGVKPYPQTNQSTLHILLPATHSDVN LCKTLLTLTMAGYPSPHIVAWGGKDDDGALRGGGSHNAKITSALAFVNDAERRRERGGFDDELVLMVDAYDVWFQ LPVDVLLARYRSILADDEVRVRHRMGNSYEHGKIGHKVIFGAGKRCSPNQLHTLACYAVPESPLPADTHGVSTDS VLGRTFMSNGRQRFLVSGYMLGSVGAVRTVLERANRKLDECVGRTGVAFDNGSGDADFCYRGSDQSIFVEMFAEQ EARREYLRRKHRSLLDPIMEVLIPNRPGSPPPKTHIMTEPISDMLSPSFPHQPFDASSVQDSEMAIVLDYFSLLG FQTSNAEFDGRFLRHDLPLGPQAGKTGLFDSTTWGSIPLFTDMCTGAIPVMLHHNSVDKTWREHAWPNAWWHGRA RALLEGRRGRGRGLGRGVRG* |
Coding | >Ophcf2|05163 ATGATGGGTTTTTCGAGGTGCGTGCCGAGGAGGCCTGTTGTCTTGGTGTCTGTGTCGTTGCTGTTTTCGTTTTTG GTGCTGAGGTTGTTGGTTACGCATGACTCGTCGTCATGGCATCGTCTAGGCATCAACCGTCAAAGCCAGCAACCC GGCGTGAAACCCTACCCGCAAACCAACCAGTCGACCCTACACATTCTCCTCCCAGCAACCCACTCAGACGTGAAC CTCTGCAAAACGCTCCTCACCTTGACCATGGCCGGATACCCGTCTCCCCATATCGTGGCCTGGGGGGGCAAAGAC GACGACGGGGCTTTGAGGGGGGGTGGTTCTCATAACGCCAAGATTACTTCTGCGCTGGCTTTCGTTAATGATGCC GAGAGGAGGAGGGAGAGAGGTGGGTTTGATGACGAGTTGGTACTCATGGTGGATGCCTATGACGTCTGGTTTCAG CTTCCGGTCGACGTTCTCCTCGCACGATATCGTTCCATCCTCGCTGACGATGAGGTCCGCGTGAGACACCGAATG GGAAATTCGTACGAGCACGGAAAGATAGGACACAAGGTCATCTTCGGCGCCGGAAAACGCTGCTCGCCGAACCAG CTCCACACTCTAGCCTGCTACGCCGTCCCCGAATCCCCCCTCCCGGCGGACACGCACGGCGTCTCGACCGATTCC GTGCTGGGCCGCACCTTTATGAGCAACGGCCGGCAGCGCTTCCTGGTGTCCGGGTATATGCTCGGGAGTGTCGGT GCGGTGAGGACCGTGCTGGAGAGGGCGAATCGGAAGTTGGACGAGTGTGTCGGGAGGACGGGCGTCGCTTTCGAC AACGGGTCTGGGGATGCGGATTTCTGTTACAGGGGGAGTGATCAGAGCATCTTTGTCGAGATGTTTGCCGAGCAG GAGGCGAGGAGAGAGTATCTTCGGAGGAAACACCGTTCTCTCTTGGACCCCATCATGGAAGTCCTCATCCCTAAC CGTCCAGGCTCCCCTCCTCCCAAGACGCACATCATGACGGAGCCGATATCGGACATGCTCTCGCCGTCATTCCCC CACCAACCCTTTGACGCCTCCTCCGTTCAAGACTCCGAGATGGCCATTGTCCTCGATTACTTTTCTCTCCTCGGC TTCCAGACTTCAAACGCAGAGTTCGACGGCCGCTTCCTCCGTCACGACCTCCCTCTAGGACCCCAAGCCGGAAAG ACGGGCCTCTTCGACTCCACGACGTGGGGGAGCATCCCGCTCTTCACCGACATGTGCACGGGGGCCATCCCCGTC ATGCTGCATCATAACTCGGTGGACAAGACGTGGAGGGAGCACGCGTGGCCGAACGCGTGGTGGCATGGGAGGGCG AGGGCCTTGCTGGAGGGGAGGAGGGGGAGGGGTCGAGGCCTTGGTCGGGGGGTTCGAGGTTGA |
Transcript | >Ophcf2|05163 ATGATGGGTTTTTCGAGGTGCGTGCCGAGGAGGCCTGTTGTCTTGGTGTCTGTGTCGTTGCTGTTTTCGTTTTTG GTGCTGAGGTTGTTGGTTACGCATGACTCGTCGTCATGGCATCGTCTAGGCATCAACCGTCAAAGCCAGCAACCC GGCGTGAAACCCTACCCGCAAACCAACCAGTCGACCCTACACATTCTCCTCCCAGCAACCCACTCAGACGTGAAC CTCTGCAAAACGCTCCTCACCTTGACCATGGCCGGATACCCGTCTCCCCATATCGTGGCCTGGGGGGGCAAAGAC GACGACGGGGCTTTGAGGGGGGGTGGTTCTCATAACGCCAAGATTACTTCTGCGCTGGCTTTCGTTAATGATGCC GAGAGGAGGAGGGAGAGAGGTGGGTTTGATGACGAGTTGGTACTCATGGTGGATGCCTATGACGTCTGGTTTCAG CTTCCGGTCGACGTTCTCCTCGCACGATATCGTTCCATCCTCGCTGACGATGAGGTCCGCGTGAGACACCGAATG GGAAATTCGTACGAGCACGGAAAGATAGGACACAAGGTCATCTTCGGCGCCGGAAAACGCTGCTCGCCGAACCAG CTCCACACTCTAGCCTGCTACGCCGTCCCCGAATCCCCCCTCCCGGCGGACACGCACGGCGTCTCGACCGATTCC GTGCTGGGCCGCACCTTTATGAGCAACGGCCGGCAGCGCTTCCTGGTGTCCGGGTATATGCTCGGGAGTGTCGGT GCGGTGAGGACCGTGCTGGAGAGGGCGAATCGGAAGTTGGACGAGTGTGTCGGGAGGACGGGCGTCGCTTTCGAC AACGGGTCTGGGGATGCGGATTTCTGTTACAGGGGGAGTGATCAGAGCATCTTTGTCGAGATGTTTGCCGAGCAG GAGGCGAGGAGAGAGTATCTTCGGAGGAAACACCGTTCTCTCTTGGACCCCATCATGGAAGTCCTCATCCCTAAC CGTCCAGGCTCCCCTCCTCCCAAGACGCACATCATGACGGAGCCGATATCGGACATGCTCTCGCCGTCATTCCCC CACCAACCCTTTGACGCCTCCTCCGTTCAAGACTCCGAGATGGCCATTGTCCTCGATTACTTTTCTCTCCTCGGC TTCCAGACTTCAAACGCAGAGTTCGACGGCCGCTTCCTCCGTCACGACCTCCCTCTAGGACCCCAAGCCGGAAAG ACGGGCCTCTTCGACTCCACGACGTGGGGGAGCATCCCGCTCTTCACCGACATGTGCACGGGGGCCATCCCCGTC ATGCTGCATCATAACTCGGTGGACAAGACGTGGAGGGAGCACGCGTGGCCGAACGCGTGGTGGCATGGGAGGGCG AGGGCCTTGCTGGAGGGGAGGAGGGGGAGGGGTCGAGGCCTTGGTCGGGGGGTTCGAGGTTGA |
Gene | >Ophcf2|05163 ATGATGGGTTTTTCGAGGTGCGTGCCGAGGAGGCCTGTTGTCTTGGTGTCTGTGTCGTTGCTGTTTTCGTTTTTG GTGCTGAGGTTGTTGGTTACGGTGAGTTTTCTCTCGTTGTTGTCCTTGTATGTACGTATGCGCTGACGGGTGTTA TTCGCAGCATGACTCGTCGTCATGGCATCGTCTAGGCATCAACCGTCAAAGCCAGCAACCCGGCGTGAAACCCTA CCCGCAAACCAACCAGTCGACCCTACACATTCTCCTCCCAGCAACCCACTCAGACGTGAACCTCTGCAAAACGCT CCTCACCTTGACCATGGCCGGATACCCGTCTCCCCATATCGTGGCCTGGGGGGGCAAAGACGACGACGGGGCTTT GAGGGGGGGTGGTTCTCATAACGCCAAGATTACTTCTGCGCTGGCTTTCGTTAATGATGCCGAGAGGAGGAGGGA GAGAGGTGGGTTTGATGACGAGTTGGTACTCATGGTGGATGCCTATGACGTCTGGTTTCAGCTTCCGGTCGACGT TCTCCTCGCACGATATCGTTCCATCCTCGCTGACGATGAGGTCCGCGTGAGACACCGAATGGGAAATTCGTACGA GCACGGAAAGATAGGACACAAGGTCATCTTCGGCGCCGGAAAACGCTGCTCGCCGAACCAGCTCCACACTCTAGC CTGCTACGCCGTCCCCGAATCCCCCCTCCCGGCGGACACGCACGGCGTCTCGACCGATTCCGTGCTGGGCCGCAC CTTTATGAGCAACGGCCGGCAGCGCTTCCTGGTGTCCGGGTATATGCTCGGGAGTGTCGGTGCGGTGAGGACCGT GCTGGAGAGGGCGAATCGGAAGTTGGACGAGTGTGTCGGGAGGACGGGCGTCGCTTTCGACAACGGGTCTGGGGA TGCGGATTTCTGTTACAGGGGGAGTGATCAGAGCATCTTTGTCGAGATGTTTGCCGAGCAGGAGGCGAGGAGAGA GTATCTTCGGAGGAAACACCGTTCTCTCTTGGACCCCATCATGGAAGTCCTCATCCCTAACCGTCCAGGCTCCCC TCCTCCCAAGACGCACATCATGACGGAGCCGATATCGGACATGCTCTCGCCGTCATTCCCCCACCAACCCTTTGA CGCCTCCTCCGTTCAAGACTCCGAGATGGCCATTGTCCTCGATTACTTTTCTCTCCTCGGCTTCCAGACTTCAAA CGCAGAGTTCGACGGCCGCTTCCTCCGTCACGACCTCCCTCTAGGACCCCAAGCCGGAAAGACGGGCCTCTTCGA CTGTCCCCCGCCACCCCCCCCCGGAAGACCTCCTACTAACTCCCCCTCCTCACCCTGCTCTCCAACGGGACCTCC CCAGCCACGACGTGGGGGAGCATCCCGCTCTTCACCGACATGTGCACGGGGGCCATCCCCGTCATGCTGCATCAT AACTCGGTGGACAAGACGTGGAGGGAGCACGCGTGGCCGAACGCGTGGTGGCATGGGAGGGCGAGGGCCTTGCTG GAGGGGAGGAGGGGGAGGGGTCGAGGCCTTGGTCGGGGGGTTCGAGGTTGA |