© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05147 |
| Gene name | |
| Location | scaffold_05:2625011..2626653 |
| Strand | + |
| Gene length (bp) | 1642 |
| Transcript length (bp) | 1464 |
| Coding sequence length (bp) | 1464 |
| Protein length (aa) | 488 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01554 | MatE | MatE | 9.8E-33 | 56 | 216 |
| PF01554 | MatE | MatE | 1.7E-23 | 276 | 435 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042910 | xenobiotic transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015297 | antiporter activity | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 83 | 105 | 22 |
| 3 | 131 | 153 | 22 |
| 4 | 165 | 182 | 17 |
| 5 | 197 | 219 | 22 |
| 6 | 224 | 246 | 22 |
| 7 | 269 | 291 | 22 |
| 8 | 304 | 326 | 22 |
| 9 | 346 | 368 | 22 |
| 10 | 420 | 442 | 22 |
| 11 | 447 | 469 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 115.64 | 64.41 | 166.87 |
| Alive | In ants, during behavior modification | 256.42 | 104.28 | 408.56 |
| Dead | In ants, recently dead | 183.47 | 93.58 | 273.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000657 | yes |
| Alive | Dead | 0.103441 | no |
| Dead | Fungus | 0.022041 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05147 MPTHDTPPVEDEHRSLLSHVVSTSYGMADSANDQASDPPGSTRSHEARVLLSYSLPLIVTSLLQYSINLSGIFTV GRLGRAELGAVSLANTTFIISCLAPFQGLATSLDTLCAQAYGSGQKHLVGLQCQRMLSFLFCLTVPLAVFWCASE HLLRRLVSDAETARLAGLYLKIAIASLPGIILFETGKRFVQAQGLFRATTYVLLIAAPANLLLSWLLVYRLRLGF VGAPIALAATQNLLGLLLILYVRFVDGSTCWGGLDHRAFSNWCIMIRLALPSMIMVEAEWFAFHAVTLFAGRFGT DYLAAQSVLMTLMTISFQLPFPLSIGASTRVANLIGGRRTEAAKMAAQVTFITAAVIGVANVTIFILLRSRLPLL FTKDEQVIAIVARTSPFVAVAQLFDSLGTGANGLLRGVGRQTVGGMAGLFAYYVVSLPVSLALAFGADWKLAGMW TGLAIGLSIVTVIEYSYLLRADWDKAASEAAKRNKAY* |
| Coding | >Ophcf2|05147 ATGCCGACACACGATACCCCCCCTGTCGAAGACGAGCATCGCAGCCTCCTATCCCATGTCGTCTCGACCTCGTAC GGCATGGCAGACTCGGCCAATGACCAGGCCTCGGACCCCCCGGGCTCTACGCGGAGCCACGAAGCCAGAGTCCTC CTGTCATATTCGCTGCCTCTCATCGTCACCAGCCTGCTGCAGTATTCCATCAACTTATCCGGCATCTTCACCGTC GGCCGCCTAGGGAGAGCCGAGTTGGGCGCCGTCTCGCTGGCAAACACCACCTTCATCATCTCCTGTCTCGCCCCC TTTCAGGGCCTCGCCACCAGTCTCGACACTCTCTGTGCCCAGGCCTACGGCTCGGGTCAGAAACACCTCGTCGGC CTGCAATGCCAGCGCATGCTCTCCTTTCTCTTCTGTCTGACGGTGCCCCTGGCCGTCTTTTGGTGCGCGTCGGAA CACCTGCTGCGACGGCTGGTGTCGGACGCTGAGACGGCCAGGCTGGCGGGCTTATACCTCAAGATCGCCATCGCC AGCCTCCCCGGCATCATCCTCTTCGAGACGGGCAAGCGTTTCGTACAGGCTCAGGGCCTGTTCCGGGCGACGACG TACGTGCTGCTCATCGCCGCGCCCGCCAACCTGCTGCTGAGCTGGTTGCTGGTATACAGGCTGCGGCTGGGCTTC GTCGGGGCCCCCATTGCCCTGGCGGCCACGCAGAATCTGCTGGGCCTACTGCTGATCCTCTACGTCCGCTTCGTC GATGGCTCGACCTGCTGGGGCGGACTCGACCATCGGGCCTTTTCGAATTGGTGCATCATGATCCGTCTAGCGCTG CCGAGCATGATCATGGTCGAGGCTGAGTGGTTTGCCTTTCACGCCGTCACCCTCTTTGCCGGACGATTCGGCACC GACTATCTCGCTGCTCAGAGCGTGCTGATGACGCTCATGACTATATCCTTTCAGCTGCCCTTTCCCCTATCCATC GGGGCGTCGACACGAGTGGCCAACCTCATTGGCGGCAGACGGACCGAGGCGGCCAAGATGGCGGCCCAAGTGACG TTTATCACGGCCGCCGTCATCGGCGTGGCAAACGTCACCATCTTCATCCTCCTCCGATCGCGGCTCCCGCTGCTA TTCACCAAAGACGAACAGGTCATTGCCATCGTCGCCCGCACCTCGCCCTTCGTCGCCGTGGCCCAGCTCTTCGAC AGCCTCGGCACCGGCGCCAACGGGCTCCTCCGCGGCGTCGGCAGACAGACGGTCGGCGGCATGGCCGGTCTTTTC GCCTACTACGTCGTCTCGCTGCCCGTCTCGCTGGCGCTGGCCTTTGGAGCGGACTGGAAGCTGGCCGGCATGTGG ACGGGGCTGGCGATCGGGCTGTCGATCGTGACGGTCATCGAGTATAGCTATCTGCTTAGGGCGGATTGGGACAAG GCTGCTTCCGAGGCGGCGAAGCGAAATAAGGCGTATTGA |
| Transcript | >Ophcf2|05147 ATGCCGACACACGATACCCCCCCTGTCGAAGACGAGCATCGCAGCCTCCTATCCCATGTCGTCTCGACCTCGTAC GGCATGGCAGACTCGGCCAATGACCAGGCCTCGGACCCCCCGGGCTCTACGCGGAGCCACGAAGCCAGAGTCCTC CTGTCATATTCGCTGCCTCTCATCGTCACCAGCCTGCTGCAGTATTCCATCAACTTATCCGGCATCTTCACCGTC GGCCGCCTAGGGAGAGCCGAGTTGGGCGCCGTCTCGCTGGCAAACACCACCTTCATCATCTCCTGTCTCGCCCCC TTTCAGGGCCTCGCCACCAGTCTCGACACTCTCTGTGCCCAGGCCTACGGCTCGGGTCAGAAACACCTCGTCGGC CTGCAATGCCAGCGCATGCTCTCCTTTCTCTTCTGTCTGACGGTGCCCCTGGCCGTCTTTTGGTGCGCGTCGGAA CACCTGCTGCGACGGCTGGTGTCGGACGCTGAGACGGCCAGGCTGGCGGGCTTATACCTCAAGATCGCCATCGCC AGCCTCCCCGGCATCATCCTCTTCGAGACGGGCAAGCGTTTCGTACAGGCTCAGGGCCTGTTCCGGGCGACGACG TACGTGCTGCTCATCGCCGCGCCCGCCAACCTGCTGCTGAGCTGGTTGCTGGTATACAGGCTGCGGCTGGGCTTC GTCGGGGCCCCCATTGCCCTGGCGGCCACGCAGAATCTGCTGGGCCTACTGCTGATCCTCTACGTCCGCTTCGTC GATGGCTCGACCTGCTGGGGCGGACTCGACCATCGGGCCTTTTCGAATTGGTGCATCATGATCCGTCTAGCGCTG CCGAGCATGATCATGGTCGAGGCTGAGTGGTTTGCCTTTCACGCCGTCACCCTCTTTGCCGGACGATTCGGCACC GACTATCTCGCTGCTCAGAGCGTGCTGATGACGCTCATGACTATATCCTTTCAGCTGCCCTTTCCCCTATCCATC GGGGCGTCGACACGAGTGGCCAACCTCATTGGCGGCAGACGGACCGAGGCGGCCAAGATGGCGGCCCAAGTGACG TTTATCACGGCCGCCGTCATCGGCGTGGCAAACGTCACCATCTTCATCCTCCTCCGATCGCGGCTCCCGCTGCTA TTCACCAAAGACGAACAGGTCATTGCCATCGTCGCCCGCACCTCGCCCTTCGTCGCCGTGGCCCAGCTCTTCGAC AGCCTCGGCACCGGCGCCAACGGGCTCCTCCGCGGCGTCGGCAGACAGACGGTCGGCGGCATGGCCGGTCTTTTC GCCTACTACGTCGTCTCGCTGCCCGTCTCGCTGGCGCTGGCCTTTGGAGCGGACTGGAAGCTGGCCGGCATGTGG ACGGGGCTGGCGATCGGGCTGTCGATCGTGACGGTCATCGAGTATAGCTATCTGCTTAGGGCGGATTGGGACAAG GCTGCTTCCGAGGCGGCGAAGCGAAATAAGGCGTATTGA |
| Gene | >Ophcf2|05147 ATGCCGACACACGATACCCCCCCTGTCGAAGACGAGCATCGCAGCCTCCTATCCCATGTCGTCTCGACCTCGTAC GGCATGGCAGACTCGGCCAATGACCAGGCCTCGGACCCCCCGGGCTCTACGCGGAGCCACGAAGCCAGAGTCCTC CTGTCATATTCGCTGCCTCTCATCGTCACCAGCCTGCTGCAGTATTCCATCAACTTATCCGGCATCTTCACCGTC GGCCGCCTAGGGAGAGCCGAGTTGGGCGCCGTCTCGCGTGAGAAGACTTCCTTCCTTCCATCCATCCTTTCATCA TGTCGTCAGCTCTTGACTAACCGTCATACAGTGGCAAACACCACCTTCATCATCTCCTGTCTCGCCCCCTTTCAG GGCCTCGCCACCAGTCTCGACACTCTCTGTGCCCAGGCCTACGGCTCGGGTCAGAAACACCTCGTCGGCCTGCAA TGCCAGCGCATGCTCTCCTTTCTCTTCTGTCTGACGGTGCCCCTGGCCGTCTTTTGGTGCGCGTCGGAACACCTG CTGCGACGGCTGGTGTCGGACGCTGAGACGGCCAGGCTGGCGGGCTTATACCTCAAGATCGCCATCGCCAGCCTC CCCGGCATCATCCTCTTCGAGACGGGCAAGCGTTTCGTACAGGCTCAGGGCCTGTTCCGGGCGACGACGTACGTG CTGCTCATCGCCGCGCCCGCCAACCTGCTGCTGAGCTGGTTGCTGGTATACAGGCTGCGGCTGGGCTTCGTCGGG GCCCCCATTGCCCTGGCGGCCACGCAGAATCTGCTGGGCCTACTGCTGATCCTCTACGTCCGCTTCGTCGATGGC TCGACCTGCTGGGGCGGACTCGACCATCGGGCCTTTTCGAATTGGTGCATCATGATCCGTCTAGCGCTGCCGAGC ATGATCATGGTCGAGGCTGAGTGGTTTGCCTTTCACGCCGTCACCCTCTTTGCCGGACGATTCGGCACCGACTAT CTCGCTGCTCAGAGCGTGCTGATGACGCTCATGACTATATCCTTTCAGCTGCCCTTTCCCCTATCCATCGGGGCG TCGACACGAGTGGCCAACCTCATTGGCGGCAGACGGACCGAGGCGGCCAAGATGGCGGCCCAAGTGGTATTATGT CTTACGGTGAGAGGAAGAAGAAACTTGACTAACGGCTTCAGACGTTTATCACGGCCGCCGTCATCGGCGTGGCAA ACGTCACCATCTTCATCCTCCTCCGATCGCGGCTCCCGCTGCTATTCACCAAAGACGAACAGGTCATTGCCATCG TCGCCCGCACCTCGCCCTTCGTCGCCGTGGCCCAGCTCTTCGACAGCCTCGGCACCGGCGCCAACGGGCTCCTCC GCGGCGTCGGCAGACAGACGGTCGGCGGCATGGCCGGTCTTTTCGCCTACTACGTCGTCTCGCTGCCCGTCTCGC TGGCGCTGGCCTTTGGAGCGGACTGGAAGCTGGCCGGCATGTGGACGGGGCTGGCGATCGGGCTGTCGATGTGAG TTGTTCTCGTCTGTTTGTTTTCTTTGATGCTTACGGGAGTCAAAATTTGTTTAGCGTGACGGTCATCGAGTATAG CTATCTGCTTAGGGCGGATTGGGACAAGGCTGCTTCCGAGGCGGCGAAGCGAAATAAGGCGTATTGA |