© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05129 |
| Gene name | |
| Location | scaffold_05:2571287..2572268 |
| Strand | + |
| Gene length (bp) | 981 |
| Transcript length (bp) | 981 |
| Coding sequence length (bp) | 981 |
| Protein length (aa) | 327 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12906 | RINGv | RING-variant domain | 2.1E-08 | 92 | 134 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0046872 | metal ion binding | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1431 | 0.1912 | 0.031 | 0.1227 | 0.247 | 0.1088 | 0.9045 | 0.4356 | 0.5685 | 0.0698 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 156 | 178 | 22 |
| 2 | 222 | 244 | 22 |
| 3 | 265 | 287 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2657 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05129 MNAQPTWDWDSLSGHPADEPAHQDTCRQPPEDESVEEPKTSQTNTRQRTRYGPRTCRICLDSEEPKFPTEATSTL GISSASSRPSYVSDDAELGRLLSPCKCKGSQKYVHEGCLNSWRLANPMADRNYWQCPTCKFNYRLARLHWASMLS SKWSQVALTLVVVVVGLFILGFVADPILDLWFDPVGTISDTVTSVVSDVEAMKPRVSETSDSWTEHFLKGFFSLG FVGFLKSLVAMGPWQWMNLRTSGLLGSGRRRGGTGRARMDNFNLVFVLIGAFTFLMAIWRGVRTVSARVLNKVSD KVLDVGGDDADEDVDDGTEAETKKDQ* |
| Coding | >Ophcf2|05129 ATGAACGCTCAACCGACGTGGGACTGGGACTCTCTGTCCGGCCACCCAGCGGACGAGCCGGCCCATCAAGACACC TGCAGACAACCGCCGGAAGACGAGTCGGTCGAGGAGCCAAAAACTTCGCAGACGAATACGAGACAGCGCACTCGC TATGGGCCCAGGACGTGTCGTATATGTTTGGACTCGGAGGAGCCCAAGTTCCCGACCGAGGCGACGTCGACTCTG GGCATCTCGTCGGCCTCATCTCGTCCCTCGTACGTGTCTGACGATGCCGAACTGGGCAGATTGCTATCACCATGC AAATGCAAGGGATCGCAGAAGTACGTGCACGAAGGGTGCCTCAACTCATGGCGGTTGGCGAATCCGATGGCCGAT AGGAATTACTGGCAATGTCCAACCTGCAAATTCAACTACCGACTAGCGCGGCTGCACTGGGCCTCGATGCTGAGC AGCAAGTGGTCACAGGTGGCGCTGACACTCGTCGTCGTCGTCGTTGGGCTCTTTATTCTGGGCTTCGTCGCAGAT CCCATACTGGACCTGTGGTTCGACCCAGTTGGCACCATCAGTGACACCGTGACCAGCGTCGTTTCCGATGTCGAG GCCATGAAGCCCCGGGTCTCCGAGACGTCTGACTCGTGGACGGAGCATTTCCTCAAGGGTTTCTTCTCGCTCGGC TTCGTCGGCTTCCTCAAGTCGCTGGTCGCCATGGGCCCCTGGCAGTGGATGAACCTCCGGACCAGCGGACTGCTG GGCTCCGGTCGTCGACGCGGCGGAACCGGAAGGGCAAGGATGGATAACTTTAATCTCGTCTTTGTTCTCATCGGT GCCTTTACCTTTCTCATGGCCATCTGGAGAGGCGTCCGGACGGTCAGCGCACGCGTACTCAACAAAGTGAGCGAC AAGGTGCTCGACGTCGGCGGAGACGACGCCGACGAGGACGTCGACGACGGAACTGAAGCGGAGACTAAAAAGGAT CAATAA |
| Transcript | >Ophcf2|05129 ATGAACGCTCAACCGACGTGGGACTGGGACTCTCTGTCCGGCCACCCAGCGGACGAGCCGGCCCATCAAGACACC TGCAGACAACCGCCGGAAGACGAGTCGGTCGAGGAGCCAAAAACTTCGCAGACGAATACGAGACAGCGCACTCGC TATGGGCCCAGGACGTGTCGTATATGTTTGGACTCGGAGGAGCCCAAGTTCCCGACCGAGGCGACGTCGACTCTG GGCATCTCGTCGGCCTCATCTCGTCCCTCGTACGTGTCTGACGATGCCGAACTGGGCAGATTGCTATCACCATGC AAATGCAAGGGATCGCAGAAGTACGTGCACGAAGGGTGCCTCAACTCATGGCGGTTGGCGAATCCGATGGCCGAT AGGAATTACTGGCAATGTCCAACCTGCAAATTCAACTACCGACTAGCGCGGCTGCACTGGGCCTCGATGCTGAGC AGCAAGTGGTCACAGGTGGCGCTGACACTCGTCGTCGTCGTCGTTGGGCTCTTTATTCTGGGCTTCGTCGCAGAT CCCATACTGGACCTGTGGTTCGACCCAGTTGGCACCATCAGTGACACCGTGACCAGCGTCGTTTCCGATGTCGAG GCCATGAAGCCCCGGGTCTCCGAGACGTCTGACTCGTGGACGGAGCATTTCCTCAAGGGTTTCTTCTCGCTCGGC TTCGTCGGCTTCCTCAAGTCGCTGGTCGCCATGGGCCCCTGGCAGTGGATGAACCTCCGGACCAGCGGACTGCTG GGCTCCGGTCGTCGACGCGGCGGAACCGGAAGGGCAAGGATGGATAACTTTAATCTCGTCTTTGTTCTCATCGGT GCCTTTACCTTTCTCATGGCCATCTGGAGAGGCGTCCGGACGGTCAGCGCACGCGTACTCAACAAAGTGAGCGAC AAGGTGCTCGACGTCGGCGGAGACGACGCCGACGAGGACGTCGACGACGGAACTGAAGCGGAGACTAAAAAGGAT CAATAA |
| Gene | >Ophcf2|05129 ATGAACGCTCAACCGACGTGGGACTGGGACTCTCTGTCCGGCCACCCAGCGGACGAGCCGGCCCATCAAGACACC TGCAGACAACCGCCGGAAGACGAGTCGGTCGAGGAGCCAAAAACTTCGCAGACGAATACGAGACAGCGCACTCGC TATGGGCCCAGGACGTGTCGTATATGTTTGGACTCGGAGGAGCCCAAGTTCCCGACCGAGGCGACGTCGACTCTG GGCATCTCGTCGGCCTCATCTCGTCCCTCGTACGTGTCTGACGATGCCGAACTGGGCAGATTGCTATCACCATGC AAATGCAAGGGATCGCAGAAGTACGTGCACGAAGGGTGCCTCAACTCATGGCGGTTGGCGAATCCGATGGCCGAT AGGAATTACTGGCAATGTCCAACCTGCAAATTCAACTACCGACTAGCGCGGCTGCACTGGGCCTCGATGCTGAGC AGCAAGTGGTCACAGGTGGCGCTGACACTCGTCGTCGTCGTCGTTGGGCTCTTTATTCTGGGCTTCGTCGCAGAT CCCATACTGGACCTGTGGTTCGACCCAGTTGGCACCATCAGTGACACCGTGACCAGCGTCGTTTCCGATGTCGAG GCCATGAAGCCCCGGGTCTCCGAGACGTCTGACTCGTGGACGGAGCATTTCCTCAAGGGTTTCTTCTCGCTCGGC TTCGTCGGCTTCCTCAAGTCGCTGGTCGCCATGGGCCCCTGGCAGTGGATGAACCTCCGGACCAGCGGACTGCTG GGCTCCGGTCGTCGACGCGGCGGAACCGGAAGGGCAAGGATGGATAACTTTAATCTCGTCTTTGTTCTCATCGGT GCCTTTACCTTTCTCATGGCCATCTGGAGAGGCGTCCGGACGGTCAGCGCACGCGTACTCAACAAAGTGAGCGAC AAGGTGCTCGACGTCGGCGGAGACGACGCCGACGAGGACGTCGACGACGGAACTGAAGCGGAGACTAAAAAGGAT CAATAA |