Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|05109
Gene name
Location	scaffold_05:2530097..2530651
Strand	-
Gene length (bp)	554
Transcript length (bp)	489
Coding sequence length (bp)	489
Protein length (aa)	163

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 53	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	97	119	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	56.37	24.95	87.80
Alive	In ants, during behavior modification	92.75	45.72	139.78
Dead	In ants, recently dead	92.13	45.71	138.54

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.027999	yes
Alive	Dead	0.980072	no
Dead	Fungus	0.027999	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|05109 MDQDAWRDSLLDTFRANFSATHGRHLARCWSHQDCRGCLDHGGCSWCPFTWACVPNACPIPLLAPAYDARICPHP AERWELRSRPFGCHVSTTTSLTAVVAVLATILIALLTLLNVSALKRYRRRAADKPDWSHDPDYAWRAVLLPPDAR ERQPLLGDATAR*
Coding	>Ophcf2\|05109 ATGGACCAAGACGCTTGGAGGGATTCCCTTCTTGACACCTTCCGCGCCAACTTCTCGGCTACCCATGGCCGCCAC CTCGCTCGATGCTGGTCTCACCAGGATTGCCGTGGCTGCTTGGATCATGGTGGATGCAGCTGGTGTCCCTTCACT TGGGCTTGTGTCCCGAACGCCTGCCCGATTCCGCTTCTTGCTCCGGCATACGATGCCCGAATATGTCCTCATCCG GCTGAGCGATGGGAACTTCGCTCGAGGCCCTTTGGCTGCCATGTCTCCACCACCACCAGTCTGACGGCCGTCGTA GCCGTTCTGGCCACCATCCTCATCGCTCTATTGACCCTACTCAACGTCTCTGCTCTCAAACGATATCGTCGCCGT GCCGCTGACAAGCCCGATTGGAGCCACGATCCCGACTACGCCTGGCGTGCCGTCCTGTTGCCTCCGGATGCCCGC GAGCGACAACCGCTCCTGGGAGACGCGACCGCTCGTTGA
Transcript	>Ophcf2\|05109 ATGGACCAAGACGCTTGGAGGGATTCCCTTCTTGACACCTTCCGCGCCAACTTCTCGGCTACCCATGGCCGCCAC CTCGCTCGATGCTGGTCTCACCAGGATTGCCGTGGCTGCTTGGATCATGGTGGATGCAGCTGGTGTCCCTTCACT TGGGCTTGTGTCCCGAACGCCTGCCCGATTCCGCTTCTTGCTCCGGCATACGATGCCCGAATATGTCCTCATCCG GCTGAGCGATGGGAACTTCGCTCGAGGCCCTTTGGCTGCCATGTCTCCACCACCACCAGTCTGACGGCCGTCGTA GCCGTTCTGGCCACCATCCTCATCGCTCTATTGACCCTACTCAACGTCTCTGCTCTCAAACGATATCGTCGCCGT GCCGCTGACAAGCCCGATTGGAGCCACGATCCCGACTACGCCTGGCGTGCCGTCCTGTTGCCTCCGGATGCCCGC GAGCGACAACCGCTCCTGGGAGACGCGACCGCTCGTTGA
Gene	>Ophcf2\|05109 ATGGACCAAGACGCTTGGAGGGATTCCCTTCTTGACACCTTCCGCGCCAACTTCTCGGCTACCCATGGCCGCCAC CTCGCTCGATGCTGGTCTCACCAGGATTGCCGTGGCTGCTTGGATCATGGTGGATGCAGCTGGTGTCCCTTCGTC CGCATATCCCTCCTTCTCGCTTCCCAACCACCCTTCCTTTCGGCTGACCACGTGGGGCATAGACTTGGGCTTGTG TCCCGAACGCCTGCCCGATTCCGCTTCTTGCTCCGGCATACGATGCCCGAATATGTCCTCATCCGGCTGAGCGAT GGGAACTTCGCTCGAGGCCCTTTGGCTGCCATGTCTCCACCACCACCAGTCTGACGGCCGTCGTAGCCGTTCTGG CCACCATCCTCATCGCTCTATTGACCCTACTCAACGTCTCTGCTCTCAAACGATATCGTCGCCGTGCCGCTGACA AGCCCGATTGGAGCCACGATCCCGACTACGCCTGGCGTGCCGTCCTGTTGCCTCCGGATGCCCGCGAGCGACAAC CGCTCCTGGGAGACGCGACCGCTCGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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