Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05101
Gene name
Locationscaffold_05:2506317..2506705
Strand-
Gene length (bp)388
Transcript length (bp)252
Coding sequence length (bp)252
Protein length (aa) 84

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08571 Yos1 Yos1-like 1.4E-33 5 83

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 2 21 19
2 63 82 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05101
MLFVGNFLYTTVLLINAIAILSEDRFLARINLSSTSYDAGFGTGADASIRGKTVKLIESIRTLMRMPLIVINTVI
ILYELIFG*
Coding >Ophcf2|05101
ATGCTCTTCGTCGGAAACTTCCTCTACACAACCGTCCTTCTCATCAACGCCATCGCCATCCTCAGCGAAGACCGC
TTCCTAGCCCGCATAAACCTGTCGAGCACGTCGTATGATGCCGGCTTTGGGACCGGCGCCGATGCGAGTATTAGG
GGCAAGACGGTGAAGCTCATTGAGAGTATTCGCACGCTGATGCGCATGCCGCTCATCGTTATAAACACCGTCATT
ATTCTTTACGAGCTCATCTTTGGCTGA
Transcript >Ophcf2|05101
ATGCTCTTCGTCGGAAACTTCCTCTACACAACCGTCCTTCTCATCAACGCCATCGCCATCCTCAGCGAAGACCGC
TTCCTAGCCCGCATAAACCTGTCGAGCACGTCGTATGATGCCGGCTTTGGGACCGGCGCCGATGCGAGTATTAGG
GGCAAGACGGTGAAGCTCATTGAGAGTATTCGCACGCTGATGCGCATGCCGCTCATCGTTATAAACACCGTCATT
ATTCTTTACGAGCTCATCTTTGGCTGA
Gene >Ophcf2|05101
ATGCTCTTCGTCGGAAACTTCCTCTACACAACCGTCCTTCTCATCAACGCCATCGCCATCCTCAGCGAAGACCGC
TTCCTAGCCCGCAGTACATCATTTCCCCCCCTTTCCATGAATCCCAAGCTGTTGAAACTAACGAGGGTAGTAAAC
CTGTCGAGCACGTCGTATGATGCCGGCTTTGGGACCGGCGCCGATGCGAGTATTAGGGGCAAGACGGTGAAGCTC
ATTGAGAGTATTCGCACGCTGATGCGCAGTTCGTCTTCCCCCTTCCCCCCCCCCCCCTTTCGGCTTGTTTCGTCT
ATACGGTGCTGACTTTTGCCCCCGTGGTGTAGTGCCGCTCATCGTTATAAACACCGTCATTATTCTTTACGAGCT
CATCTTTGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail