© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05081 |
| Gene name | |
| Location | scaffold_05:2447503..2448994 |
| Strand | - |
| Gene length (bp) | 1491 |
| Transcript length (bp) | 1215 |
| Coding sequence length (bp) | 1215 |
| Protein length (aa) | 405 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 2.5E-39 | 12 | 384 |
| PF13520 | AA_permease_2 | Amino acid permease | 2.5E-20 | 11 | 383 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.1216 | 0.0713 | 0.1331 | 0.2583 | 0.3107 | 0.0402 | 0.2683 | 0.4653 | 0.1597 | 0.0058 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 83 | 105 | 22 |
| 4 | 120 | 139 | 19 |
| 5 | 146 | 168 | 22 |
| 6 | 198 | 220 | 22 |
| 7 | 251 | 273 | 22 |
| 8 | 317 | 337 | 20 |
| 9 | 372 | 390 | 18 |
| Orthofinder run ID | 4 |
| Orthogroup | 6465 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05081 MVNRKLRGINLSMIAVNATLGSGLYWTGGQVLKIGGPLAAPLSFLLPGLLAWAVMQCVTEMLCIWPIPGALSVYV AEFVDVELGIAVGVAYWFTYSVSFAALIATSAAEIHLWLPTSKVFDGVVVYLLIPVTLVLINTFEVEIYGWLEVA GSSIKITCLVVVMILVGVLMDESPVHPKGIELWRAPVVFDRDVTNNWATAFAICLSMATFAYVGVEVVAASALEA RWPSRKEPSKRNGDDLLISKTVKFSAVYIPMFATAAYTLAALLASLSIDRGDCHLPRLSWINSSCGSGPQGGTAS IFVVIARNSTRPALKDIFNVILVFSVLTCANTNLYVASRTLFGLTTRLDGSPTQQPLLRFLAWFGRTNRRKVPLR ALIFSAVAFLWVPFLQLDEGNDISEVSEH* |
| Coding | >Ophcf2|05081 ATGGTGAACCGCAAGCTCCGAGGCATCAACCTATCGATGATCGCCGTCAACGCCACGCTGGGATCAGGCCTGTAT TGGACGGGCGGGCAGGTACTCAAGATAGGAGGGCCGCTCGCAGCGCCGCTTTCGTTCCTGCTTCCGGGGCTGTTG GCGTGGGCGGTGATGCAGTGCGTGACCGAGATGTTGTGCATATGGCCTATTCCCGGCGCCTTGTCCGTTTACGTG GCTGAGTTTGTCGACGTCGAGTTGGGGATTGCGGTGGGTGTTGCCTACTGGTTCACGTATTCTGTTTCCTTTGCT GCGCTTATTGCTACCTCGGCTGCTGAGATTCACCTCTGGCTTCCCACGAGCAAGGTGTTTGACGGCGTTGTCGTA TATCTTCTTATACCCGTCACCTTGGTCCTCATCAATACTTTCGAGGTGGAAATCTATGGCTGGCTTGAGGTCGCC GGCAGCAGCATCAAGATTACCTGCCTCGTCGTCGTCATGATCCTCGTTGGCGTCTTGATGGACGAGTCACCCGTT CATCCCAAGGGAATCGAATTGTGGCGTGCCCCCGTCGTCTTCGACCGCGACGTCACCAACAACTGGGCCACAGCC TTCGCCATCTGCCTCTCCATGGCAACCTTCGCCTACGTCGGCGTCGAAGTCGTGGCCGCCTCCGCCCTCGAAGCC CGCTGGCCATCGAGAAAGGAACCGTCCAAGCGCAACGGCGACGATCTCCTCATCAGCAAGACGGTCAAGTTCTCG GCCGTATATATCCCCATGTTCGCCACGGCCGCTTACACGCTGGCCGCGTTGCTGGCTTCCCTCAGCATCGACCGC GGTGACTGTCATCTCCCGCGTCTTAGCTGGATCAATAGCTCGTGCGGCTCCGGGCCTCAGGGCGGTACGGCTTCC ATCTTTGTCGTCATCGCTCGTAACTCGACCAGGCCGGCGCTCAAGGATATCTTCAACGTCATCCTCGTCTTCAGT GTCTTGACGTGCGCCAATACTAACCTCTACGTCGCCTCCCGCACCCTCTTCGGCCTCACTACCAGGCTCGACGGC TCCCCTACCCAGCAACCCCTGCTACGCTTCCTGGCCTGGTTCGGTAGGACGAATCGTCGTAAAGTGCCGCTGCGG GCTCTCATCTTCTCCGCCGTTGCCTTTCTATGGGTTCCGTTTCTGCAGCTGGACGAGGGCAACGACATTTCCGAG GTGAGTGAGCATTGA |
| Transcript | >Ophcf2|05081 ATGGTGAACCGCAAGCTCCGAGGCATCAACCTATCGATGATCGCCGTCAACGCCACGCTGGGATCAGGCCTGTAT TGGACGGGCGGGCAGGTACTCAAGATAGGAGGGCCGCTCGCAGCGCCGCTTTCGTTCCTGCTTCCGGGGCTGTTG GCGTGGGCGGTGATGCAGTGCGTGACCGAGATGTTGTGCATATGGCCTATTCCCGGCGCCTTGTCCGTTTACGTG GCTGAGTTTGTCGACGTCGAGTTGGGGATTGCGGTGGGTGTTGCCTACTGGTTCACGTATTCTGTTTCCTTTGCT GCGCTTATTGCTACCTCGGCTGCTGAGATTCACCTCTGGCTTCCCACGAGCAAGGTGTTTGACGGCGTTGTCGTA TATCTTCTTATACCCGTCACCTTGGTCCTCATCAATACTTTCGAGGTGGAAATCTATGGCTGGCTTGAGGTCGCC GGCAGCAGCATCAAGATTACCTGCCTCGTCGTCGTCATGATCCTCGTTGGCGTCTTGATGGACGAGTCACCCGTT CATCCCAAGGGAATCGAATTGTGGCGTGCCCCCGTCGTCTTCGACCGCGACGTCACCAACAACTGGGCCACAGCC TTCGCCATCTGCCTCTCCATGGCAACCTTCGCCTACGTCGGCGTCGAAGTCGTGGCCGCCTCCGCCCTCGAAGCC CGCTGGCCATCGAGAAAGGAACCGTCCAAGCGCAACGGCGACGATCTCCTCATCAGCAAGACGGTCAAGTTCTCG GCCGTATATATCCCCATGTTCGCCACGGCCGCTTACACGCTGGCCGCGTTGCTGGCTTCCCTCAGCATCGACCGC GGTGACTGTCATCTCCCGCGTCTTAGCTGGATCAATAGCTCGTGCGGCTCCGGGCCTCAGGGCGGTACGGCTTCC ATCTTTGTCGTCATCGCTCGTAACTCGACCAGGCCGGCGCTCAAGGATATCTTCAACGTCATCCTCGTCTTCAGT GTCTTGACGTGCGCCAATACTAACCTCTACGTCGCCTCCCGCACCCTCTTCGGCCTCACTACCAGGCTCGACGGC TCCCCTACCCAGCAACCCCTGCTACGCTTCCTGGCCTGGTTCGGTAGGACGAATCGTCGTAAAGTGCCGCTGCGG GCTCTCATCTTCTCCGCCGTTGCCTTTCTATGGGTTCCGTTTCTGCAGCTGGACGAGGGCAACGACATTTCCGAG GTGAGTGAGCATTGA |
| Gene | >Ophcf2|05081 ATGGTGAACCGCAAGCTCCGAGGCATCAACCTATCGGTACGCACACCGTTCATCCCCTCCATTCAACCGGCCAGC TCACCGCTCCACCCTAGATGATCGCCGTCAACGCCACGCTGGGATCAGGCCTGTATTGGACGGGCGGGCAGGTAC TCAAGATAGGAGGGCCGCTCGCAGCGCCGCTTTCGTTCCTGCTTCCGGGGCTGTTGGCGTGGGCGGTGATGCAGT GCGTGACCGAGATGTTGTGCATATGGCCTATTCCCGGCGCCTTGTCCGTTTACGTGGCTGAGTTTGTCGACGTCG AGTTGGGGATTGCGGTGGGTGTTGCCTACTGGTGAGTTTTCGGCCTTTATGTGTATCATGTGTATTCGTATGCTT TTCAACCTTGCTGATGGGACGAGGTTCACGTATTCTGTTTCCTTTGCTGCGCTTATTGCTACCTCGGCTGCTGAG ATTCACCTCTGGCTTCCCACGAGCAAGGTGTTTGACGGCGTTGTCGTATATCTTCTTATACCCGTCACCTTGGTC CTCATCAATACTTTCGAGGTGGAAATCTATGGCTGGCTTGAGGTCGCCGGCAGCAGCATCAAGATTACCTGCCTC GTCGTCGTCATGATCCTCGTTGGCGTCTTGATGGACGGTGAGCGCCACCTGCTCTCGCCATCAAACAGACTGCTG ACCCAGGAGATAGAGTCACCCGTTCATCCCAAGGGAATCGAATGTGAATTTCGTCCGAGTCTACATCATCATCAC CCCTTGCTAACAACCTGCAGTGTGGCGTGCCCCCGTCGTCTTCGACCGCGACGTCACCAACAACTGGGCCACAGC CTTCGCGTACGCCCTACTCCCCTCATCAGCAAGATCGCCCAACTAACTCACCAAAGCATCTGCCTCTCCATGGCA ACCTTCGCCTACGTCGGCGTCGAAGTCGTGGCCGCCTCCGCCCTCGAAGCCCGCTGGCCATCGAGAAAGGAACCG TCCAAGCGCAACGGCGACGATCTCCTCATCAGCAAGACGGTCAAGTTCTCGGCCGTATATATCCCCATGTTCGCC ACGGCCGCTTACACGCTGGCCGCGTTGCTGGCTTCCCTCAGCATCGACCGCGGTGACTGTCATCTCCCGCGTCTT AGCTGGATCAATAGCTCGTGCGGCTCCGGGCCTCAGGGCGGTACGGCTTCCATCTTTGTCGTCATCGCTCGTAAC TCGACCAGGCCGGCGCTCAAGGATATCTTCAACGTCATCCTCGTCTTCAGTGTCTTGACGTGCGCCAATACTAAC CTCTACGTCGCCTCCCGCACCCTCTTCGGCCTCACTACCAGGCTCGACGGCTCCCCTACCCAGCAACCCCTGCTA CGCTTCCTGGCCTGGTTCGGTAGGACGAATCGTCGTAAAGTGCCGCTGCGGGCTCTCATCTTCTCCGCCGTTGCC TTTCTATGGGTTCCGTTTCTGCAGCTGGACGAGGGCAACGACATTTCCGAGGTGAGTGAGCATTGA |