Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05064
Gene name
Locationscaffold_05:2397188..2398598
Strand+
Gene length (bp)1410
Transcript length (bp)1134
Coding sequence length (bp)1134
Protein length (aa) 378

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 220 242 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 11.70 4.61 18.79
Alive In ants, during behavior modification 233.03 123.00 343.05
Dead In ants, recently dead 116.52 65.74 167.30

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.000238 yes
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05064
MLLLTLASLLQPASAILATPGSPCSTGCGNVLGSTSADDVVCDTGAYADAVGQLFQGCVECEMGSGFGGDGTDVG
AMLYNLRFALSYCLFGYPANEQLASSPCITSKACGPFRDATIYGNLSSKRRGYEYCRLWPSSSTGGDVDYRACAE
CLQVAQKPYLANFVTVLEAGCEQKPEPGIGVGISGSVFSHDWVNVSAPSPTATVNPAWFDQGQLGLGGKVGIAVG
SLVAVLIVAGCVVVVNVSPSSPSGEKSKTAAKGRTSRPVTTTWDDTPVSQQPLRPWDDRHASWASPYSSQYNSPV
SAHDHSPGAHLSLSALGIVQAGRREGEEAYEMRGCGDAPVLAHPGFGRSADGPPRQYEPGVAEAKRANGEGSGVE
RW*
Coding >Ophcf2|05064
ATGCTGCTCCTGACCCTCGCCTCGCTCCTCCAGCCAGCGAGCGCCATCCTCGCAACGCCAGGGTCGCCCTGCTCG
ACGGGATGCGGCAACGTGCTGGGCTCGACGTCTGCGGATGACGTCGTTTGCGACACGGGCGCTTATGCGGATGCC
GTCGGTCAACTTTTTCAGGGCTGTGTTGAGTGTGAGATGGGGAGTGGTTTTGGGGGGGATGGGACGGATGTTGGG
GCTATGCTTTATAACTTGCGATTTGCGCTCTCTTATTGTCTCTTTGGATACCCGGCCAACGAGCAGCTGGCCAGC
TCGCCATGCATCACCAGCAAAGCCTGCGGCCCGTTCCGCGACGCCACCATCTACGGGAACCTCTCATCCAAGCGC
CGGGGCTACGAGTACTGCCGGCTTTGGCCGTCGTCGTCTACCGGCGGGGATGTCGACTATAGGGCCTGTGCCGAG
TGTCTGCAGGTGGCTCAGAAGCCGTACCTTGCGAATTTCGTCACCGTTCTCGAAGCCGGCTGCGAGCAAAAACCG
GAACCGGGCATCGGCGTCGGGATATCCGGCAGCGTCTTCTCGCATGACTGGGTCAACGTATCGGCTCCGTCGCCG
ACCGCCACCGTCAACCCAGCCTGGTTCGATCAGGGACAGCTCGGGTTGGGAGGAAAAGTAGGCATCGCCGTTGGA
AGTCTCGTCGCGGTTCTCATCGTCGCTGGCTGCGTCGTCGTTGTCAACGTCTCGCCCTCGTCGCCCAGCGGTGAA
AAGTCCAAGACTGCGGCGAAAGGGCGCACTTCACGACCCGTTACCACTACCTGGGATGACACGCCCGTCAGCCAG
CAGCCTCTCCGGCCATGGGACGACCGACACGCATCGTGGGCCTCGCCCTACTCGAGCCAGTATAACAGCCCCGTC
AGTGCCCACGACCACAGCCCCGGAGCGCACCTCTCGCTTTCGGCACTGGGCATCGTCCAGGCGGGGAGGAGGGAA
GGGGAAGAGGCGTATGAGATGCGTGGCTGCGGCGATGCGCCTGTGCTTGCGCATCCCGGCTTCGGGAGGAGCGCC
GATGGTCCGCCGAGGCAGTATGAGCCAGGTGTGGCGGAAGCCAAGAGAGCGAATGGAGAGGGTAGCGGAGTGGAG
AGATGGTGA
Transcript >Ophcf2|05064
ATGCTGCTCCTGACCCTCGCCTCGCTCCTCCAGCCAGCGAGCGCCATCCTCGCAACGCCAGGGTCGCCCTGCTCG
ACGGGATGCGGCAACGTGCTGGGCTCGACGTCTGCGGATGACGTCGTTTGCGACACGGGCGCTTATGCGGATGCC
GTCGGTCAACTTTTTCAGGGCTGTGTTGAGTGTGAGATGGGGAGTGGTTTTGGGGGGGATGGGACGGATGTTGGG
GCTATGCTTTATAACTTGCGATTTGCGCTCTCTTATTGTCTCTTTGGATACCCGGCCAACGAGCAGCTGGCCAGC
TCGCCATGCATCACCAGCAAAGCCTGCGGCCCGTTCCGCGACGCCACCATCTACGGGAACCTCTCATCCAAGCGC
CGGGGCTACGAGTACTGCCGGCTTTGGCCGTCGTCGTCTACCGGCGGGGATGTCGACTATAGGGCCTGTGCCGAG
TGTCTGCAGGTGGCTCAGAAGCCGTACCTTGCGAATTTCGTCACCGTTCTCGAAGCCGGCTGCGAGCAAAAACCG
GAACCGGGCATCGGCGTCGGGATATCCGGCAGCGTCTTCTCGCATGACTGGGTCAACGTATCGGCTCCGTCGCCG
ACCGCCACCGTCAACCCAGCCTGGTTCGATCAGGGACAGCTCGGGTTGGGAGGAAAAGTAGGCATCGCCGTTGGA
AGTCTCGTCGCGGTTCTCATCGTCGCTGGCTGCGTCGTCGTTGTCAACGTCTCGCCCTCGTCGCCCAGCGGTGAA
AAGTCCAAGACTGCGGCGAAAGGGCGCACTTCACGACCCGTTACCACTACCTGGGATGACACGCCCGTCAGCCAG
CAGCCTCTCCGGCCATGGGACGACCGACACGCATCGTGGGCCTCGCCCTACTCGAGCCAGTATAACAGCCCCGTC
AGTGCCCACGACCACAGCCCCGGAGCGCACCTCTCGCTTTCGGCACTGGGCATCGTCCAGGCGGGGAGGAGGGAA
GGGGAAGAGGCGTATGAGATGCGTGGCTGCGGCGATGCGCCTGTGCTTGCGCATCCCGGCTTCGGGAGGAGCGCC
GATGGTCCGCCGAGGCAGTATGAGCCAGGTGTGGCGGAAGCCAAGAGAGCGAATGGAGAGGGTAGCGGAGTGGAG
AGATGGTGA
Gene >Ophcf2|05064
ATGCTGCTCCTGACCCTCGCCTCGCTCCTCCAGCCAGCGAGCGCCATCCTCGCAACGCCAGGGTCGCCCTGCTCG
ACGGGATGCGGCAACGTGCTGGGCTCGACGTCTGCGGATGACGTCGTTTGCGACACGGGCGCTTATGCGGATGCC
GTCGGTCAACTTTTTCAGGGCTGTGTTGAGTGTGAGATGGGGAGTGGTTTTGGGGGGGATGGGACGGATGTTGGG
GCTATGCTTTGTGCGTTTGTTTTTTTTTTCCTTTTTTTTTTCCTTTGGTGGTTTGCTAGAGCGTCTTTCGTATCT
ATCGAGTATTTTGGCGGTTGACGTTTGCTTATATGGGTGTGAATAGATAACTTGCGATTTGCGCTCTCTTATTGT
CTCTTTGGATACCCGGCCAACGAGCAGCTGGCCAGCTCGCCATGCATCACCAGGTGAGATGAGAACGATGGACGG
ATGGAACCGGGCTGACGAGCACTACAGCAAAGCCTGCGGCCCGTTCCGCGACGCCACCATCTACGGGAACCTCTC
ATCCAAGCGCCGGGGCTACGAGTACTGCCGGCTTTGGCCGTCGTCGTCTACCGGCGGGGATGTCGACTATAGGGC
CTGTGCCGAGTGTCTGCAGGTGGCTCAGAAGCCGTACCTTGCGAATTGTGAGCCCAAGAGATGTGTATTGATGTG
AGCCGGCTGATTCTCATGCACGCAGTCGTCACCGTTCTCGAAGCCGGCTGCGAGCAAAAACCGGAACCGGGCATC
GGCGTCGGGATATCCGGCAGCGTCTTCTCGCATGACTGGGTCAACGTATCGGCTCCGTCGCCGACCGCCACCGTC
AACCCAGCCTGGTTCGATCAGGGACAGCTCGGGTTGGGAGGAAAAGTAGGCATCGCCGTTGGAAGTCTCGTCGCG
GTTCTCATCGTCGCTGGCTGCGTCGTCGTTGTCAACGGTAAGAGAAGAAGACGGGCTTACCTTCGCCGCCTTGAG
GCTAGATGCGGTCCTCCGTCCACAGTCTCGCCCTCGTCGCCCAGCGGTGAAAAGTCCAAGACTGCGGCGAAAGGG
CGCACTTCACGACCCGTTACCACTACCTGGGATGACACGCCCGTCAGCCAGCAGCCTCTCCGGCCATGGGACGAC
CGACACGCATCGTGGGCCTCGCCCTACTCGAGCCAGTATAACAGCCCCGTCAGTGCCCACGACCACAGCCCCGGA
GCGCACCTCTCGCTTTCGGCACTGGGCATCGTCCAGGCGGGGAGGAGGGAAGGGGAAGAGGCGTATGAGATGCGT
GGCTGCGGCGATGCGCCTGTGCTTGCGCATCCCGGCTTCGGGAGGAGCGCCGATGGTCCGCCGAGGCAGTATGAG
CCAGGTGTGGCGGAAGCCAAGAGAGCGAATGGAGAGGGTAGCGGAGTGGAGAGATGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail