Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05053
Gene name
Locationscaffold_05:2374255..2375064
Strand-
Gene length (bp)809
Transcript length (bp)753
Coding sequence length (bp)753
Protein length (aa) 251

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08058 NPCC Nuclear pore complex component 1.8E-22 11 135

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 68 0.5

Transmembrane Domains

Domain # Start End Length
1 38 55 17
2 68 90 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05053
MSPSPVPDSPGTWRHPRLNEITSRRNATTFNEKNVRRIACNLVAFLVLYAIRLVARLKFDPRILPATLLSYLGWA
WVAFQMVPLAQICLACLPLLRSNDDLSDIPLTATQRRLLGLPPSSAPPTPDGKFSTPPRYSRTPSIAGSVGSRAS
YNSSPLSGHASPAPQASTAASPSPFSSGGSPLLQKTMGGFAHGRRSSIGSTSPLGASTSANPFADASSPSPSAGK
RTSVGLNSKWLYEKGRRASGSAWLS*
Coding >Ophcf2|05053
ATGTCGCCGTCGCCCGTGCCCGACAGCCCCGGCACCTGGAGGCATCCGAGACTTAATGAGATCACGAGCAGACGC
AATGCCACGACCTTTAATGAGAAGAACGTGCGTCGTATAGCCTGCAATCTGGTAGCCTTTCTCGTTCTCTACGCC
ATCCGGCTCGTGGCTCGCCTCAAGTTCGATCCCCGCATCTTGCCCGCGACTCTCCTCTCTTACCTGGGCTGGGCC
TGGGTCGCCTTTCAGATGGTTCCTCTCGCACAGATCTGCCTCGCCTGCCTGCCACTCCTCCGCTCGAACGACGAT
CTATCCGACATACCCCTGACGGCCACACAGCGGCGACTGCTAGGCCTCCCCCCCTCATCGGCACCCCCAACACCC
GACGGAAAATTTAGCACTCCGCCTCGCTACTCGCGCACACCTTCCATCGCCGGCTCCGTCGGTAGCAGAGCCAGC
TACAATAGCTCACCGCTCTCAGGACACGCGAGTCCGGCACCGCAGGCCTCGACGGCGGCGTCCCCTTCTCCCTTC
TCCTCGGGCGGCAGTCCCCTTCTGCAGAAGACGATGGGCGGCTTCGCTCACGGCCGGAGGTCGTCCATAGGCTCG
ACCAGTCCTCTGGGCGCGAGCACTTCGGCCAATCCCTTTGCCGATGCCAGTTCGCCGAGTCCTTCGGCGGGGAAG
CGCACCAGCGTCGGGCTGAATAGCAAATGGCTCTACGAAAAGGGGCGTCGAGCTTCAGGAAGTGCCTGGCTTTCG
TGA
Transcript >Ophcf2|05053
ATGTCGCCGTCGCCCGTGCCCGACAGCCCCGGCACCTGGAGGCATCCGAGACTTAATGAGATCACGAGCAGACGC
AATGCCACGACCTTTAATGAGAAGAACGTGCGTCGTATAGCCTGCAATCTGGTAGCCTTTCTCGTTCTCTACGCC
ATCCGGCTCGTGGCTCGCCTCAAGTTCGATCCCCGCATCTTGCCCGCGACTCTCCTCTCTTACCTGGGCTGGGCC
TGGGTCGCCTTTCAGATGGTTCCTCTCGCACAGATCTGCCTCGCCTGCCTGCCACTCCTCCGCTCGAACGACGAT
CTATCCGACATACCCCTGACGGCCACACAGCGGCGACTGCTAGGCCTCCCCCCCTCATCGGCACCCCCAACACCC
GACGGAAAATTTAGCACTCCGCCTCGCTACTCGCGCACACCTTCCATCGCCGGCTCCGTCGGTAGCAGAGCCAGC
TACAATAGCTCACCGCTCTCAGGACACGCGAGTCCGGCACCGCAGGCCTCGACGGCGGCGTCCCCTTCTCCCTTC
TCCTCGGGCGGCAGTCCCCTTCTGCAGAAGACGATGGGCGGCTTCGCTCACGGCCGGAGGTCGTCCATAGGCTCG
ACCAGTCCTCTGGGCGCGAGCACTTCGGCCAATCCCTTTGCCGATGCCAGTTCGCCGAGTCCTTCGGCGGGGAAG
CGCACCAGCGTCGGGCTGAATAGCAAATGGCTCTACGAAAAGGGGCGTCGAGCTTCAGGAAGTGCCTGGCTTTCG
TGA
Gene >Ophcf2|05053
ATGTCGCCGTCGCCCGTGCCCGACAGCCCCGGCACCTGGAGGCATCCGAGACTTAATGAGATCACGAGCAGACGC
AATGCCACGACCTTTAATGAGAAGAACGTGCGTCGTATAGCCTGCAATCTGGTAGCCTTTCTCGTTCTCTACGCC
ATCCGGCTCGTGGCTCGCCTCAAGTTCGATCCCCGCATGTATGTCCACGCTTCATCCCCAAGTCTTTTAAACTCC
CGCTCATGGACGTCACCAGCTTGCCCGCGACTCTCCTCTCTTACCTGGGCTGGGCCTGGGTCGCCTTTCAGATGG
TTCCTCTCGCACAGATCTGCCTCGCCTGCCTGCCACTCCTCCGCTCGAACGACGATCTATCCGACATACCCCTGA
CGGCCACACAGCGGCGACTGCTAGGCCTCCCCCCCTCATCGGCACCCCCAACACCCGACGGAAAATTTAGCACTC
CGCCTCGCTACTCGCGCACACCTTCCATCGCCGGCTCCGTCGGTAGCAGAGCCAGCTACAATAGCTCACCGCTCT
CAGGACACGCGAGTCCGGCACCGCAGGCCTCGACGGCGGCGTCCCCTTCTCCCTTCTCCTCGGGCGGCAGTCCCC
TTCTGCAGAAGACGATGGGCGGCTTCGCTCACGGCCGGAGGTCGTCCATAGGCTCGACCAGTCCTCTGGGCGCGA
GCACTTCGGCCAATCCCTTTGCCGATGCCAGTTCGCCGAGTCCTTCGGCGGGGAAGCGCACCAGCGTCGGGCTGA
ATAGCAAATGGCTCTACGAAAAGGGGCGTCGAGCTTCAGGAAGTGCCTGGCTTTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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