© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05049 |
| Gene name | |
| Location | scaffold_05:2369261..2369902 |
| Strand | + |
| Gene length (bp) | 641 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 516 |
| Protein length (aa) | 172 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05255 | UPF0220 | Uncharacterised protein family (UPF0220) | 1.2E-64 | 3 | 165 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 39 | 22 |
| 2 | 59 | 78 | 19 |
| 3 | 99 | 121 | 22 |
| 4 | 136 | 158 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 211.76 | 119.69 | 303.82 |
| Alive | In ants, during behavior modification | 136.81 | 68.84 | 204.79 |
| Dead | In ants, recently dead | 123.42 | 65.57 | 181.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.033671 | yes |
| Alive | Dead | 0.634782 | no |
| Dead | Fungus | 0.003275 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05049 MDNHRLWKFGRPDWLNSAWARSAGIYAAGALFSVAFYVMLDSAVWSKSALNGSNVHIRFVDWLPLIFSSLGMLII NSIEKQRLSADSFSYSGSGVAWKARVVLFLGFAALAGGMAGGVTVFVLKFIVPGVSMPALGMGIENIISNALVGI SSVVLWVSQNMEDEYSYNLAI* |
| Coding | >Ophcf2|05049 ATGGACAACCACCGACTCTGGAAGTTTGGGAGGCCGGACTGGCTTAATAGCGCTTGGGCTCGCAGCGCGGGCATC TACGCTGCCGGTGCCCTCTTCTCTGTCGCCTTTTACGTCATGCTCGATTCGGCTGTCTGGTCCAAGTCGGCTCTC AACGGTTCCAACGTCCATATCCGCTTCGTCGATTGGCTGCCCCTCATCTTCTCCAGCCTCGGCATGCTCATCATC AACTCCATCGAGAAGCAGCGCCTCAGCGCAGACTCCTTCAGTTATAGTGGCTCTGGAGTCGCCTGGAAGGCCCGC GTCGTCCTATTTCTCGGCTTTGCTGCTTTGGCCGGTGGCATGGCCGGCGGCGTCACCGTCTTTGTCCTCAAGTTC ATCGTCCCCGGCGTTTCCATGCCAGCCCTCGGCATGGGCATCGAGAATATCATAAGCAACGCCCTCGTCGGCATC AGCTCCGTTGTTCTTTGGGTCAGTCAGAATATGGAAGACGAGTACTCGTACAATCTGGCGATATGA |
| Transcript | >Ophcf2|05049 ATGGACAACCACCGACTCTGGAAGTTTGGGAGGCCGGACTGGCTTAATAGCGCTTGGGCTCGCAGCGCGGGCATC TACGCTGCCGGTGCCCTCTTCTCTGTCGCCTTTTACGTCATGCTCGATTCGGCTGTCTGGTCCAAGTCGGCTCTC AACGGTTCCAACGTCCATATCCGCTTCGTCGATTGGCTGCCCCTCATCTTCTCCAGCCTCGGCATGCTCATCATC AACTCCATCGAGAAGCAGCGCCTCAGCGCAGACTCCTTCAGTTATAGTGGCTCTGGAGTCGCCTGGAAGGCCCGC GTCGTCCTATTTCTCGGCTTTGCTGCTTTGGCCGGTGGCATGGCCGGCGGCGTCACCGTCTTTGTCCTCAAGTTC ATCGTCCCCGGCGTTTCCATGCCAGCCCTCGGCATGGGCATCGAGAATATCATAAGCAACGCCCTCGTCGGCATC AGCTCCGTTGTTCTTTGGGTCAGTCAGAATATGGAAGACGAGTACTCGTACAATCTGGCGATATGA |
| Gene | >Ophcf2|05049 ATGGACAACCACCGACTCTGGAAGTTTGGGAGGCCGGACTGGCTTAATAGCGCTTGGGCTCGCAGCGCGGGCATC TACGCTGCCGGTGCCCTCGTACGTTGATACTAACCCCGTCGTCTTCTAACTCCTGCGACACTGACCACGTTTGAC GCAGTTCTCTGTCGCCTTTTACGTCATGCTCGATTCGGCTGTCTGGTCCAAGTCGGCTCTCAACGGTTCCAACGT CCATATCCGCTTCGTCGATTGGCTGCCCCTCATCTTCTCCAGCCTCGGCATGCTCATCATCAACTCCATCGAGAA GCAGCGCCTCAGCGCAGACTCCTTCAGTTATAGTGGCTCTGGAGTCGCCTGGAAGGCCCGCGTCGTCCTATTTCT CGGCTTTGCTGCTTTGGCCGGTGGCATGGCCGGCGGCGTCACCGTCTTTGTCCTCAAGTTCATCGTCCCCGGCGT TTCCATGCCAGCCCTCGGCATGGGCATCGAGAATATCATAAGCAACGCCCTCGTCGGCATCAGGTATATACTTAC TTGCTCTTTTCCCTCTTGTCCCGGTTTCAGCTGCTCACGGACCTTGTTCAAGCTCCGTTGTTCTTTGGGTCAGTC AGAATATGGAAGACGAGTACTCGTACAATCTGGCGATATGA |