© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|05048 |
| Gene name | |
| Location | scaffold_05:2367052..2368198 |
| Strand | - |
| Gene length (bp) | 1146 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.1155 | 0.1614 | 0.4018 | 0.5314 | 0.0985 | 0.0106 | 0.1205 | 0.4722 | 0.1381 | 0.0029 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| 2 | 145 | 167 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 60.93 | 33.84 | 88.03 |
| Alive | In ants, during behavior modification | 88.06 | 49.22 | 126.90 |
| Dead | In ants, recently dead | 69.05 | 38.93 | 99.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.056900 | no |
| Alive | Dead | 0.154330 | no |
| Dead | Fungus | 0.571984 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 1833 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|05048 MLLPRDSPSAFASTLTTTIIVVSSFGSRTMAQQMASSDPPPARTPQGKAPSPTPDQTTPAPTPTSEDATTTTTTT TPSSTPDATSDSGLTANPTITRGPQATAGGELSGLPTLTRNIIPTYPPPAVPPTRDAPFMRHSTLPEGTVFIAVG AFLGLLGLAILVYRAIVSLLLHRSVKRAAMAQHMSNSKAGFPAPPAPFYKYTDQESTMSLSAAGRGARRAARGPV SSANPSHSNLFFSPTAVNANAGSRASSLLPSGFYGAGTAPGSSAAIHANSISLHNLRPDSRGHYTNGSRHTLTGT PPDSPQYHPRRDAAAAAAASASSLHINPGSSSARRAPSAYLEDLLADDAVSLPPPPPPMQPSELPGSSVYGERTD GGHSRI* |
| Coding | >Ophcf2|05048 ATGTTGCTCCCGCGCGACTCACCCTCGGCTTTTGCCTCGACTCTCACCACCACCATCATCGTCGTCTCTTCCTTC GGCTCTCGAACCATGGCTCAGCAAATGGCCAGTTCCGATCCACCGCCAGCCCGCACTCCGCAAGGCAAGGCGCCC TCTCCGACGCCAGACCAGACGACGCCCGCGCCTACGCCTACCTCGGAAGATGCGACGACGACGACGACGACGACG ACGCCCTCGTCTACCCCCGACGCGACTTCAGATTCCGGTCTGACGGCCAACCCTACCATCACCAGAGGTCCACAG GCAACGGCTGGTGGCGAGCTCAGCGGCCTCCCTACTCTCACGAGAAACATCATCCCGACTTATCCCCCTCCAGCC GTGCCTCCCACCCGCGACGCCCCCTTCATGCGCCATTCAACCCTTCCAGAAGGCACCGTCTTCATCGCCGTCGGT GCTTTCCTCGGCCTCCTCGGTCTCGCCATCCTCGTTTATCGCGCCATTGTCAGTCTCCTCCTCCACCGCTCCGTC AAGCGCGCCGCCATGGCCCAGCACATGTCCAACTCCAAGGCTGGCTTCCCCGCGCCCCCGGCCCCTTTCTACAAG TACACCGATCAGGAGTCCACCATGTCGCTCTCCGCCGCCGGACGCGGAGCCCGAAGAGCCGCTCGAGGACCCGTC TCCTCCGCCAACCCAAGCCACTCCAACCTCTTCTTCTCCCCCACTGCCGTCAACGCCAACGCCGGCTCCCGCGCC TCTTCACTCCTGCCCTCGGGCTTCTACGGCGCAGGCACGGCCCCTGGCTCCTCGGCCGCCATCCACGCAAACTCC ATCAGCCTGCACAACCTCCGGCCCGACTCGCGCGGCCACTACACCAACGGCTCCCGTCACACCCTCACCGGCACA CCGCCCGACTCGCCCCAGTATCACCCCCGGAGAGACGCCGCCGCCGCCGCCGCCGCCAGCGCATCCTCCTTGCAC ATCAACCCGGGCTCCTCGTCGGCCAGGCGAGCTCCCAGCGCCTATCTCGAGGACCTACTGGCCGACGACGCCGTC TCCCTGCCGCCGCCGCCGCCGCCCATGCAGCCGTCAGAGCTTCCGGGCAGCTCCGTCTACGGCGAGAGGACCGAC GGCGGCCACAGCCGCATCTGA |
| Transcript | >Ophcf2|05048 ATGTTGCTCCCGCGCGACTCACCCTCGGCTTTTGCCTCGACTCTCACCACCACCATCATCGTCGTCTCTTCCTTC GGCTCTCGAACCATGGCTCAGCAAATGGCCAGTTCCGATCCACCGCCAGCCCGCACTCCGCAAGGCAAGGCGCCC TCTCCGACGCCAGACCAGACGACGCCCGCGCCTACGCCTACCTCGGAAGATGCGACGACGACGACGACGACGACG ACGCCCTCGTCTACCCCCGACGCGACTTCAGATTCCGGTCTGACGGCCAACCCTACCATCACCAGAGGTCCACAG GCAACGGCTGGTGGCGAGCTCAGCGGCCTCCCTACTCTCACGAGAAACATCATCCCGACTTATCCCCCTCCAGCC GTGCCTCCCACCCGCGACGCCCCCTTCATGCGCCATTCAACCCTTCCAGAAGGCACCGTCTTCATCGCCGTCGGT GCTTTCCTCGGCCTCCTCGGTCTCGCCATCCTCGTTTATCGCGCCATTGTCAGTCTCCTCCTCCACCGCTCCGTC AAGCGCGCCGCCATGGCCCAGCACATGTCCAACTCCAAGGCTGGCTTCCCCGCGCCCCCGGCCCCTTTCTACAAG TACACCGATCAGGAGTCCACCATGTCGCTCTCCGCCGCCGGACGCGGAGCCCGAAGAGCCGCTCGAGGACCCGTC TCCTCCGCCAACCCAAGCCACTCCAACCTCTTCTTCTCCCCCACTGCCGTCAACGCCAACGCCGGCTCCCGCGCC TCTTCACTCCTGCCCTCGGGCTTCTACGGCGCAGGCACGGCCCCTGGCTCCTCGGCCGCCATCCACGCAAACTCC ATCAGCCTGCACAACCTCCGGCCCGACTCGCGCGGCCACTACACCAACGGCTCCCGTCACACCCTCACCGGCACA CCGCCCGACTCGCCCCAGTATCACCCCCGGAGAGACGCCGCCGCCGCCGCCGCCGCCAGCGCATCCTCCTTGCAC ATCAACCCGGGCTCCTCGTCGGCCAGGCGAGCTCCCAGCGCCTATCTCGAGGACCTACTGGCCGACGACGCCGTC TCCCTGCCGCCGCCGCCGCCGCCCATGCAGCCGTCAGAGCTTCCGGGCAGCTCCGTCTACGGCGAGAGGACCGAC GGCGGCCACAGCCGCATCTGA |
| Gene | >Ophcf2|05048 ATGTTGCTCCCGCGCGACTCACCCTCGGCTTTTGCCTCGACTCTCACCACCACCATCATCGTCGTCTCTTCCTTC GGCTCTCGAACCATGGCTCAGCAAATGGCCAGTTCCGATCCACCGCCAGCCCGCACTCCGCAAGGCAAGGCGCCC TCTCCGACGCCAGACCAGACGACGCCCGCGCCTACGCCTACCTCGGAAGATGCGACGACGACGACGACGACGACG ACGCCCTCGTCTACCCCCGACGCGACTTCAGATTCCGGTCTGACGGCCAACCCTACCATCACCAGAGGTCCACAG GCAACGGCTGGTGGCGAGCTCAGCGGCCTCCCTACTCTCACGAGAAACATCATCCCGACTTATCCCCCTCCAGCC GTGCCTCCCACCCGCGACGCCCCCTTCATGCGCCATTCAACCCTTCCAGAAGGCACCGTCTTCATCGCCGTCGGT GCTTTCCTCGGCCTCCTCGGTCTCGCCATCCTCGTTTATCGCGCCATTGTCAGTCTCCTCCTCCACCGCTCCGTC AAGCGCGCCGCCATGGCCCAGCACATGTCCAACTCCAAGGCTGGCTTCCCCGCGCCCCCGGCCCCTTTCTACAAG TACACCGATCAGGAGTCCACCATGTCGCTCTCCGCCGCCGGACGCGGAGCCCGAAGAGCCGCTCGAGGACCCGTC TCCTCCGCCAACCCAAGCCACTCCAACCTCTTCTTCTCCCCCACTGCCGTCAACGCCAACGCCGGCTCCCGCGCC TCTTCACTCCTGCCCTCGGGCTTCTACGGCGCAGGCACGGCCCCTGGCTCCTCGGCCGCCATCCACGCAAACTCC ATCAGCCTGCACAACCTCCGGCCCGACTCGCGCGGCCACTACACCAACGGCTCCCGTCACACCCTCACCGGCACA CCGCCCGACTCGCCCCAGTATCACCCCCGGAGAGACGCCGCCGCCGCCGCCGCCGCCAGCGCATCCTCCTTGCAC ATCAACCCGGGCTCCTCGTCGGCCAGGCGAGCTCCCAGCGCCTATCTCGAGGACCTACTGGCCGACGACGCCGTC TCCCTGCCGCCGCCGCCGCCGCCCATGCAGCCGTCAGAGCTTCCGGGCAGCTCCGTCTACGGCGAGAGGACCGAC GGCGGCCACAGCCGCATCTGA |