Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|05031
Gene name
Locationscaffold_05:2310532..2311397
Strand-
Gene length (bp)865
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01894 UPF0047 Uncharacterised protein family UPF0047 3.2E-36 84 204

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|05031
MISSQFLTYTMPQRTTGISTAGTLAFILLLFISLFPNLFHVIWTFPFSFLRPAKISSPAVQPIAMPWFQKELKLP
SRGRGSYLVTNEIVSALPELRSYRVGLLNLFVQHTSCALSLNENWDEDVRADMSDAMDRIVPNSGPNGESLYRHD
AEGPDDMPAHVKTALIGASVTIPIRDGNLALGTWQGIWHLEFRTSRHSRRLVATIQGDKV*
Coding >Ophcf2|05031
ATGATCTCATCGCAATTCCTAACCTACACCATGCCTCAACGAACCACCGGCATCTCCACCGCAGGCACCCTGGCC
TTTATCCTCCTGCTCTTCATCTCGCTATTTCCGAATCTATTCCACGTCATCTGGACCTTTCCATTCAGTTTCTTG
CGCCCCGCAAAGATCAGCAGCCCCGCCGTACAGCCGATCGCCATGCCGTGGTTTCAGAAGGAACTTAAGCTCCCG
TCGCGAGGTAGAGGCTCATACCTGGTCACCAATGAGATCGTATCCGCCCTGCCAGAGCTGCGAAGCTACAGAGTC
GGCCTCTTGAATCTCTTCGTGCAGCACACGAGTTGCGCTCTCAGCCTCAACGAGAATTGGGATGAAGATGTACGG
GCAGATATGAGCGATGCTATGGATCGCATTGTACCCAACAGTGGCCCAAACGGGGAGTCGCTCTACCGTCACGAC
GCCGAGGGGCCCGATGACATGCCGGCACATGTCAAGACTGCCTTGATCGGGGCCAGCGTCACCATTCCCATCCGA
GACGGAAATCTGGCGTTGGGTACGTGGCAAGGAATCTGGCATCTCGAATTCCGGACGAGCAGACATTCGCGACGG
CTCGTGGCGACCATTCAGGGTGACAAGGTGTGA
Transcript >Ophcf2|05031
ATGATCTCATCGCAATTCCTAACCTACACCATGCCTCAACGAACCACCGGCATCTCCACCGCAGGCACCCTGGCC
TTTATCCTCCTGCTCTTCATCTCGCTATTTCCGAATCTATTCCACGTCATCTGGACCTTTCCATTCAGTTTCTTG
CGCCCCGCAAAGATCAGCAGCCCCGCCGTACAGCCGATCGCCATGCCGTGGTTTCAGAAGGAACTTAAGCTCCCG
TCGCGAGGTAGAGGCTCATACCTGGTCACCAATGAGATCGTATCCGCCCTGCCAGAGCTGCGAAGCTACAGAGTC
GGCCTCTTGAATCTCTTCGTGCAGCACACGAGTTGCGCTCTCAGCCTCAACGAGAATTGGGATGAAGATGTACGG
GCAGATATGAGCGATGCTATGGATCGCATTGTACCCAACAGTGGCCCAAACGGGGAGTCGCTCTACCGTCACGAC
GCCGAGGGGCCCGATGACATGCCGGCACATGTCAAGACTGCCTTGATCGGGGCCAGCGTCACCATTCCCATCCGA
GACGGAAATCTGGCGTTGGGTACGTGGCAAGGAATCTGGCATCTCGAATTCCGGACGAGCAGACATTCGCGACGG
CTCGTGGCGACCATTCAGGGTGACAAGGTGTGA
Gene >Ophcf2|05031
ATGATCTCATCGCAATTCCTAACCTACACCATGCCTCAACGAACCACCGGCATCTCCACCGCAGGCACCCTGGCC
TTTATCCTCCTGCTCTTCATCTCGCTATTTCCGAATCTATTCCACGTCATCTGGACCTTTCCATTCAGTTTCTTG
CGCCCCGCAAAGATCAGCAGCCCCGCCGTACAGCCGATCGCCATGCCGTGGTTTCAGAAGGAACTTAAGCTCCCG
TCGCGAGGTAGAGGCTCATACCTGGTCACCAATGAGATCGTATCCGCCCTGCCAGAGCTGCGAAGCTACAGAGTC
GGCCTCTTGAATCTCTTCGTGCAGCACACGAGTTGCGCTCTCAGCCTCAACGAGAATTGTGGGTGGGCGCCCATG
GGTCGAGGTCACTGAGCTGGGGAAGCTGACGAGCCCGATGCGCGCAGGGGATGAAGATGTACGGGCAGATATGAG
CGATGCTATGGATCGCATTGTACCCAACAGTGGCCCAAACGGGGAGTCGCTCTACCGTCACGAGTAAGTCTACAG
CGGTCAGCCTCCCGAGCCGGTTTTGACCAGCCGTGTTCCAGCGCCGAGGGGCCCGATGACATGCCGGTAAGCACG
ACGTGAGGCTGAAGGCGGTGCCGTCGAGCTGAGCACATCATTCAGGCACATGTCAAGACTGCCTTGATCGGGGCC
AGCGTCACCATTCCCATCCGAGACGGAAATCTGGTACGTCTGCCGCTTATTGGGCTCCGAAAGCGGCTCGCGACC
TCACTAACACTATACGGAGGCGTTGGGTACGTGGCAAGGAATCTGGCATCTCGAATTCCGGACGAGCAGACATTC
GCGACGGCTCGTGGCGACCATTCAGGGTGACAAGGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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