© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04950 |
| Gene name | |
| Location | scaffold_05:2058647..2059264 |
| Strand | - |
| Gene length (bp) | 617 |
| Transcript length (bp) | 474 |
| Coding sequence length (bp) | 474 |
| Protein length (aa) | 158 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 13.64 | 2.95 | 24.33 |
| Alive | In ants, during behavior modification | 3962.57 | 1547.99 | 6377.14 |
| Dead | In ants, recently dead | 1177.48 | 581.39 | 1773.58 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04950 MSSNTTGTSTPIAIAVALSTTATIALVLTLLERKLLVLAPEKAKDNEARSSDAKNVTVSAQTSPRLLHRPFTPTA AGIAMSSPGPPPDRALPPTPLRADHVVEAAGRSVPSPSPSPAPAPAPAPAPTPTRPEPVRRGIFSDYLQQEGALE RLVGPCR* |
| Coding | >Ophcf2|04950 ATGTCGTCCAACACCACCGGAACGTCCACCCCCATCGCCATAGCCGTCGCCCTGTCCACCACGGCGACGATAGCC CTGGTCTTGACATTGCTGGAAAGGAAGCTCCTCGTTCTCGCGCCGGAAAAGGCCAAGGATAATGAAGCTCGCTCT TCCGACGCGAAAAACGTCACCGTCTCGGCCCAGACTTCTCCCCGTCTCCTTCATCGGCCCTTTACACCCACCGCC GCGGGAATAGCCATGTCTTCTCCCGGCCCTCCTCCCGATCGCGCTCTCCCTCCGACGCCTCTGCGCGCAGACCAC GTCGTTGAAGCCGCGGGCCGCTCAGTCCCGTCTCCGTCTCCGTCTCCGGCCCCGGCTCCGGCTCCGGCCCCGGCT CCTACCCCTACCCGTCCCGAGCCTGTCCGACGGGGCATCTTCAGTGACTACCTGCAGCAAGAGGGTGCGCTGGAA CGACTGGTCGGCCCCTGCAGGTGA |
| Transcript | >Ophcf2|04950 ATGTCGTCCAACACCACCGGAACGTCCACCCCCATCGCCATAGCCGTCGCCCTGTCCACCACGGCGACGATAGCC CTGGTCTTGACATTGCTGGAAAGGAAGCTCCTCGTTCTCGCGCCGGAAAAGGCCAAGGATAATGAAGCTCGCTCT TCCGACGCGAAAAACGTCACCGTCTCGGCCCAGACTTCTCCCCGTCTCCTTCATCGGCCCTTTACACCCACCGCC GCGGGAATAGCCATGTCTTCTCCCGGCCCTCCTCCCGATCGCGCTCTCCCTCCGACGCCTCTGCGCGCAGACCAC GTCGTTGAAGCCGCGGGCCGCTCAGTCCCGTCTCCGTCTCCGTCTCCGGCCCCGGCTCCGGCTCCGGCCCCGGCT CCTACCCCTACCCGTCCCGAGCCTGTCCGACGGGGCATCTTCAGTGACTACCTGCAGCAAGAGGGTGCGCTGGAA CGACTGGTCGGCCCCTGCAGGTGA |
| Gene | >Ophcf2|04950 ATGTCGTCCAACACCACCGGAACGTCCACCCCCATCGCCATAGCCGTCGCCCTGTCCACCACGGCGACGATAGCC CTGGTCTTGACATTGCTGGTATGGCACCTCCGTCGGAAACGCACCAAGCTAGACGACGACGACGACGACGACGAC GACTTGGAATCCCCCACGCCCCTCGTCCCCCCAGGGCTTCCCTCCCAAACAACAGCACTCCATTGACACCCCCCC CGCGCCTCCAGGAAAGGAAGCTCCTCGTTCTCGCGCCGGAAAAGGCCAAGGATAATGAAGCTCGCTCTTCCGACG CGAAAAACGTCACCGTCTCGGCCCAGACTTCTCCCCGTCTCCTTCATCGGCCCTTTACACCCACCGCCGCGGGAA TAGCCATGTCTTCTCCCGGCCCTCCTCCCGATCGCGCTCTCCCTCCGACGCCTCTGCGCGCAGACCACGTCGTTG AAGCCGCGGGCCGCTCAGTCCCGTCTCCGTCTCCGTCTCCGGCCCCGGCTCCGGCTCCGGCCCCGGCTCCTACCC CTACCCGTCCCGAGCCTGTCCGACGGGGCATCTTCAGTGACTACCTGCAGCAAGAGGGTGCGCTGGAACGACTGG TCGGCCCCTGCAGGTGA |