© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|04949 |
| Gene name | |
| Location | scaffold_05:2055720..2058220 |
| Strand | + |
| Gene length (bp) | 2500 |
| Transcript length (bp) | 2382 |
| Coding sequence length (bp) | 2382 |
| Protein length (aa) | 794 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01434 | Peptidase_M41 | Peptidase family M41 | 2.5E-52 | 560 | 739 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 2.8E-41 | 349 | 478 |
| PF17862 | AAA_lid_3 | AAA+ lid domain | 4.0E-09 | 501 | 543 |
| PF07728 | AAA_5 | AAA domain (dynein-related subfamily) | 8.0E-05 | 348 | 415 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0004222 | metalloendopeptidase activity | Yes |
| GO:0006508 | proteolysis | Yes |
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0004176 | ATP-dependent peptidase activity | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0008152 | metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0008150 | biological_process | No |
| GO:0043167 | ion binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 264 | 286 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04949 MAYQGAVLPTKAIHAWSTATNSLAASCLRLAGSAQPRRTFESRVEQMLKPCSPGNLGRAISLARPHKISRPITSS PYCGGLGLRNLTGRALPLPSNGLASLMRRSISTYGSGAWRRSFGTANGISRNQLASLEESANRNPGNANAQNSFY QLLLRANMPGILVERHQSGRFATNAATEESYKKALAALNAGTNLTAGASPSPSPASSFVNRQWTGSEQQPQAYAP VSPFGSTNPFQAQMGARGLPLHVVIQETMAGYLFKLVKAIAYYLVYLYLAYVAVTLAIEWMSSSRRPGGISMSDT SQVEAQKQSTRLSDVHGCDEAKEELQEVIEFLRNPEKFTDLGAKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFF YMSGSAFDEIYVGVGAKRVRDLFHAAKSKAPAIVFIDELDAIGGKRNPRDHAHAKQTLNQLLTELDGFDQDTKIV IMAATNLPSLLDKALTRPGRFDRHIDVGLPDFRGRLAILEHHAKKIKLDENVDLGSVAARCPGYSGAELENMLNI AALRASRARANTISMRDVDWAYDRILMGSERKSIVISAKDKETTAYHEAGHAIVRLFESDSKANLYKVTILPKGQ SLGHTSFVQEADKYSQSMAECMADIRVLLGGKMAEEMHSGTDKVTTGVSNDLEKATDLSYMMVTSFGMSDALGPV EYGRRYENLSSETRAKIEAEVQRTLNTSYEAVRKILTERRKELDLLAKALIQYETLSKAEVERVIRGEELTERTA VPPGPLILPIPEQTPEPPGLSGVTQSDPPESPAPPAAAESSSS* |
| Coding | >Ophcf2|04949 ATGGCTTACCAAGGAGCGGTGTTGCCGACCAAGGCCATCCACGCCTGGTCGACGGCGACAAACTCGCTCGCCGCA TCGTGTCTTCGACTCGCGGGCTCTGCGCAACCGCGCCGTACCTTTGAAAGTCGTGTCGAGCAGATGCTGAAACCT TGTTCGCCTGGTAATTTGGGACGCGCCATATCCCTCGCTCGACCTCATAAAATTTCGAGACCCATCACGTCGAGC CCGTACTGCGGCGGCTTGGGTTTGCGAAATTTGACGGGACGGGCACTGCCCCTACCCTCCAATGGTCTCGCGTCG CTGATGCGCCGGTCCATTTCGACCTACGGCTCCGGTGCTTGGCGTAGGAGTTTCGGCACCGCCAACGGAATCTCG CGCAATCAACTGGCTTCTCTCGAAGAATCGGCCAACCGCAACCCGGGCAATGCGAATGCGCAAAACTCGTTCTAC CAGCTCTTGCTGAGAGCCAACATGCCTGGCATCTTGGTCGAGCGGCATCAGTCGGGTCGATTCGCCACGAACGCT GCAACTGAGGAATCTTACAAGAAGGCTCTCGCCGCCTTGAACGCGGGGACCAACCTGACGGCCGGCGCGTCACCG TCGCCATCACCGGCGTCATCGTTTGTCAACCGTCAATGGACAGGCAGCGAACAGCAACCGCAGGCCTACGCCCCG GTCTCTCCCTTCGGCAGCACGAATCCTTTCCAAGCTCAGATGGGGGCTAGGGGACTGCCGCTGCACGTCGTCATC CAGGAGACGATGGCGGGATATCTATTCAAGCTGGTAAAGGCCATTGCTTACTATCTCGTCTACCTCTACTTGGCG TATGTTGCCGTCACACTGGCCATAGAGTGGATGTCTTCTTCTAGAAGACCCGGAGGCATCAGCATGAGCGATACC TCCCAGGTCGAGGCCCAGAAGCAGTCGACCCGGCTGAGCGACGTCCACGGCTGCGACGAAGCCAAGGAGGAGCTG CAGGAAGTCATCGAGTTCCTGCGAAACCCTGAAAAGTTCACGGATCTCGGTGCCAAGCTCCCCAAGGGCGTCCTT CTCGTCGGTCCTCCAGGGACCGGCAAGACGCTACTGGCCAGGGCCGTGGCTGGGGAAGCCGGCGTCCCCTTCTTC TACATGTCCGGCAGCGCATTCGACGAGATATACGTCGGCGTCGGCGCCAAACGAGTCCGGGATCTCTTCCACGCG GCCAAGTCCAAGGCGCCGGCCATCGTCTTCATCGACGAGCTCGACGCCATCGGAGGCAAGCGAAATCCCCGGGAT CATGCGCACGCCAAACAGACGCTCAACCAACTCCTGACTGAGCTCGACGGCTTTGACCAGGATACCAAGATTGTC ATCATGGCAGCCACCAACCTGCCCAGCCTCCTCGACAAGGCCCTGACGCGGCCGGGCCGCTTCGATCGGCACATC GACGTCGGCCTGCCAGATTTTCGCGGCCGTCTCGCCATACTAGAACATCACGCCAAGAAGATCAAGCTGGACGAA AACGTCGACCTTGGGTCCGTCGCGGCCCGCTGCCCCGGATACTCGGGCGCCGAGCTCGAGAACATGCTCAACATT GCGGCGCTGAGGGCGTCGCGGGCCAGGGCAAACACAATCTCCATGCGGGACGTCGACTGGGCCTACGACAGGATC CTCATGGGCTCCGAGAGGAAGTCGATAGTCATCTCGGCCAAGGACAAGGAGACGACGGCATACCACGAGGCGGGT CACGCCATTGTCCGACTGTTTGAGAGCGACAGCAAGGCCAATCTGTACAAGGTGACGATCCTGCCCAAGGGCCAG TCGCTGGGCCACACGTCCTTTGTTCAGGAGGCGGACAAGTACTCTCAGTCGATGGCCGAGTGCATGGCGGACATA CGGGTTCTTCTCGGGGGCAAGATGGCGGAAGAGATGCACTCGGGGACCGACAAGGTGACGACGGGCGTGTCCAAT GACCTCGAGAAGGCCACGGACCTCAGCTACATGATGGTGACGAGTTTCGGCATGTCGGACGCCCTCGGGCCCGTA GAATACGGCCGACGGTACGAGAACCTCAGCTCGGAGACGCGGGCCAAGATCGAGGCCGAGGTTCAGCGGACGCTC AACACGTCGTACGAGGCTGTGAGGAAGATTTTGACGGAGCGGCGCAAGGAGCTGGACCTGCTGGCCAAGGCGCTC ATCCAGTACGAGACGCTCAGCAAGGCCGAGGTCGAGAGGGTCATTCGCGGCGAGGAGCTGACGGAGAGGACGGCG GTCCCGCCGGGACCCCTGATCCTGCCGATACCGGAGCAGACGCCGGAGCCTCCGGGGCTGAGCGGCGTGACGCAG TCGGATCCTCCCGAGTCGCCGGCGCCACCGGCCGCGGCCGAGTCTTCCAGCAGCTGA |
| Transcript | >Ophcf2|04949 ATGGCTTACCAAGGAGCGGTGTTGCCGACCAAGGCCATCCACGCCTGGTCGACGGCGACAAACTCGCTCGCCGCA TCGTGTCTTCGACTCGCGGGCTCTGCGCAACCGCGCCGTACCTTTGAAAGTCGTGTCGAGCAGATGCTGAAACCT TGTTCGCCTGGTAATTTGGGACGCGCCATATCCCTCGCTCGACCTCATAAAATTTCGAGACCCATCACGTCGAGC CCGTACTGCGGCGGCTTGGGTTTGCGAAATTTGACGGGACGGGCACTGCCCCTACCCTCCAATGGTCTCGCGTCG CTGATGCGCCGGTCCATTTCGACCTACGGCTCCGGTGCTTGGCGTAGGAGTTTCGGCACCGCCAACGGAATCTCG CGCAATCAACTGGCTTCTCTCGAAGAATCGGCCAACCGCAACCCGGGCAATGCGAATGCGCAAAACTCGTTCTAC CAGCTCTTGCTGAGAGCCAACATGCCTGGCATCTTGGTCGAGCGGCATCAGTCGGGTCGATTCGCCACGAACGCT GCAACTGAGGAATCTTACAAGAAGGCTCTCGCCGCCTTGAACGCGGGGACCAACCTGACGGCCGGCGCGTCACCG TCGCCATCACCGGCGTCATCGTTTGTCAACCGTCAATGGACAGGCAGCGAACAGCAACCGCAGGCCTACGCCCCG GTCTCTCCCTTCGGCAGCACGAATCCTTTCCAAGCTCAGATGGGGGCTAGGGGACTGCCGCTGCACGTCGTCATC CAGGAGACGATGGCGGGATATCTATTCAAGCTGGTAAAGGCCATTGCTTACTATCTCGTCTACCTCTACTTGGCG TATGTTGCCGTCACACTGGCCATAGAGTGGATGTCTTCTTCTAGAAGACCCGGAGGCATCAGCATGAGCGATACC TCCCAGGTCGAGGCCCAGAAGCAGTCGACCCGGCTGAGCGACGTCCACGGCTGCGACGAAGCCAAGGAGGAGCTG CAGGAAGTCATCGAGTTCCTGCGAAACCCTGAAAAGTTCACGGATCTCGGTGCCAAGCTCCCCAAGGGCGTCCTT CTCGTCGGTCCTCCAGGGACCGGCAAGACGCTACTGGCCAGGGCCGTGGCTGGGGAAGCCGGCGTCCCCTTCTTC TACATGTCCGGCAGCGCATTCGACGAGATATACGTCGGCGTCGGCGCCAAACGAGTCCGGGATCTCTTCCACGCG GCCAAGTCCAAGGCGCCGGCCATCGTCTTCATCGACGAGCTCGACGCCATCGGAGGCAAGCGAAATCCCCGGGAT CATGCGCACGCCAAACAGACGCTCAACCAACTCCTGACTGAGCTCGACGGCTTTGACCAGGATACCAAGATTGTC ATCATGGCAGCCACCAACCTGCCCAGCCTCCTCGACAAGGCCCTGACGCGGCCGGGCCGCTTCGATCGGCACATC GACGTCGGCCTGCCAGATTTTCGCGGCCGTCTCGCCATACTAGAACATCACGCCAAGAAGATCAAGCTGGACGAA AACGTCGACCTTGGGTCCGTCGCGGCCCGCTGCCCCGGATACTCGGGCGCCGAGCTCGAGAACATGCTCAACATT GCGGCGCTGAGGGCGTCGCGGGCCAGGGCAAACACAATCTCCATGCGGGACGTCGACTGGGCCTACGACAGGATC CTCATGGGCTCCGAGAGGAAGTCGATAGTCATCTCGGCCAAGGACAAGGAGACGACGGCATACCACGAGGCGGGT CACGCCATTGTCCGACTGTTTGAGAGCGACAGCAAGGCCAATCTGTACAAGGTGACGATCCTGCCCAAGGGCCAG TCGCTGGGCCACACGTCCTTTGTTCAGGAGGCGGACAAGTACTCTCAGTCGATGGCCGAGTGCATGGCGGACATA CGGGTTCTTCTCGGGGGCAAGATGGCGGAAGAGATGCACTCGGGGACCGACAAGGTGACGACGGGCGTGTCCAAT GACCTCGAGAAGGCCACGGACCTCAGCTACATGATGGTGACGAGTTTCGGCATGTCGGACGCCCTCGGGCCCGTA GAATACGGCCGACGGTACGAGAACCTCAGCTCGGAGACGCGGGCCAAGATCGAGGCCGAGGTTCAGCGGACGCTC AACACGTCGTACGAGGCTGTGAGGAAGATTTTGACGGAGCGGCGCAAGGAGCTGGACCTGCTGGCCAAGGCGCTC ATCCAGTACGAGACGCTCAGCAAGGCCGAGGTCGAGAGGGTCATTCGCGGCGAGGAGCTGACGGAGAGGACGGCG GTCCCGCCGGGACCCCTGATCCTGCCGATACCGGAGCAGACGCCGGAGCCTCCGGGGCTGAGCGGCGTGACGCAG TCGGATCCTCCCGAGTCGCCGGCGCCACCGGCCGCGGCCGAGTCTTCCAGCAGCTGA |
| Gene | >Ophcf2|04949 ATGGCTTACCAAGGAGCGGTGTTGCCGGTGAGTCGAACTTGACCCCCTTGCCTCCCACGGTCGCTAACTTGGTTC GTTGAGACCAAGGCCATCCACGCCTGGTCGACGGCGACAAACTCGCTCGCCGCATCGTGTCTTCGACTCGCGGGC TCTGCGCAACCGCGCCGTACCTTTGAAAGTCGTGTCGAGCAGATGCTGAAACCTTGTTCGCCTGGTAATTTGGGA CGCGCCATATCCCTCGCTCGACCTCATAAAATTTCGAGACCCATCACGTCGAGCCCGTACTGCGGCGGCTTGGGT TTGCGAAATTTGACGGGACGGGCACTGCCCCTACCCTCCAATGGTCTCGCGTCGCTGATGCGCCGGTCCATTTCG ACCTACGGCTCCGGTGCTTGGCGTAGGAGTTTCGGCACCGCCAACGGAATCTCGCGCAATCAACTGGCTTCTCTC GAAGAATCGGCCAACCGCAACCCGGGCAATGCGAATGCGCAAAACTCGTTCTACCAGCTCTTGCTGAGAGCCAAC ATGCCTGGCATCTTGGTCGAGCGGCATCAGTCGGGTCGATTCGCCACGAACGCTGCAACTGAGGAATCTTACAAG AAGGCTCTCGCCGCCTTGAACGCGGGGACCAACCTGACGGCCGGCGCGTCACCGTCGCCATCACCGGCGTCATCG TTTGTCAACCGTCAATGGACAGGCAGCGAACAGCAACCGCAGGCCTACGCCCCGGTCTCTCCCTTCGGCAGCACG AATCCTTTCCAAGCTCAGATGGGGGCTAGGGGACTGCCGCTGCACGTCGTCATCCAGGAGACGATGGCGGGATAT CTATTCAAGCTGGTAAAGGCCATTGCTTACTATCTCGTCTACCTCTACTTGGCGTATGTTGCCGTCACACTGGCC ATAGAGTGGATGTCTTCTTCTAGAAGACCCGGAGGCATCAGCATGAGCGATACCTCCCAGGTCGAGGCCCAGAAG CAGTCGACCCGGCTGAGCGACGTCCACGGCTGCGACGAAGCCAAGGAGGAGCTGCAGGAAGTCATCGAGTTCCTG CGAAACCCTGAAAAGTTCACGGATCTCGGTGCCAAGCTCCCCAAGGGCGTCCTTCTCGTCGGTCCTCCAGGGACC GGCAAGACGCTACTGGCCAGGGCCGTGGCTGGGGAAGCCGGCGTCCCCTTCTTCTACATGTCCGGCAGCGCATTC GACGAGATATACGTCGGCGTCGGCGCCAAACGAGTCCGGGATCTCTTCCACGCGGCCAAGTCCAAGGCGCCGGCC ATCGTCTTCATCGACGAGCTCGACGCCATCGGAGGCAAGCGAAATCCCCGGGATCATGCGCACGCCAAACAGACG CTCAACCAACTCCTGACTGAGCTCGACGGCTTTGACCAGGATACCAAGATTGTCATCATGGCAGCCACCAACCTG CCCAGCCTCCTCGACAAGGCCCTGACGCGGCCGGGCCGCTTCGATCGGCACATCGACGTCGGCCTGCCAGATTTT CGCGGCCGTCTCGCCATACTAGAACATCACGCCAAGAAGATCAAGCTGGACGAAAACGTCGACCTTGGGTCCGTC GCGGCCCGCTGCCCCGGATACTCGGGCGCCGAGCTCGAGAACATGCTCAACATTGCGGCGCTGAGGGCGTCGCGG GCCAGGGCAAACACAATCTCCATGCGGGACGTCGACTGGGCCTACGACAGGATCCTCATGGGCTCCGAGAGGAAG TCGATAGTCATCTCGGCCAAGGACAAGGAGACGACGGCATACCACGAGGCGGGTCACGCCATTGTCCGACTGTTT GAGAGCGACAGCAAGGCCAATCTGTACAAGGTGACGATCCTGCCCAAGGGCCAGTCGCTGGGCCACACGTCCTTT GTTCAGGAGGCGGACAAGTACTCTCAGTCGATGGCCGAGTGCATGGCGGACATACGGGTTCTTCTCGGGGGCAAG ATGGCGGAAGAGATGCACTCGGGGACCGACAAGGTGACGACGGGCGTGTCCAATGTGAGTTGAAGCTGGGGCAAA ATGGAAATTGTACCGATACCGACCTCTTACTCACTCTAAACAGGACCTCGAGAAGGCCACGGACCTCAGCTACAT GATGGTGACGAGTTTCGGCATGTCGGACGCCCTCGGGCCCGTAGAATACGGCCGACGGTACGAGAACCTCAGCTC GGAGACGCGGGCCAAGATCGAGGCCGAGGTTCAGCGGACGCTCAACACGTCGTACGAGGCTGTGAGGAAGATTTT GACGGAGCGGCGCAAGGAGCTGGACCTGCTGGCCAAGGCGCTCATCCAGTACGAGACGCTCAGCAAGGCCGAGGT CGAGAGGGTCATTCGCGGCGAGGAGCTGACGGAGAGGACGGCGGTCCCGCCGGGACCCCTGATCCTGCCGATACC GGAGCAGACGCCGGAGCCTCCGGGGCTGAGCGGCGTGACGCAGTCGGATCCTCCCGAGTCGCCGGCGCCACCGGC CGCGGCCGAGTCTTCCAGCAGCTGA |