© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04893 |
| Gene name | |
| Location | scaffold_05:1894217..1895892 |
| Strand | + |
| Gene length (bp) | 1675 |
| Transcript length (bp) | 1536 |
| Coding sequence length (bp) | 1536 |
| Protein length (aa) | 512 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 3.2E-35 | 271 | 412 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0008233 | peptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0016787 | hydrolase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 164 | 186 | 22 |
| 2 | 275 | 297 | 22 |
| 3 | 314 | 336 | 22 |
| 4 | 340 | 359 | 19 |
| 5 | 371 | 390 | 19 |
| 6 | 455 | 477 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 33.31 | 18.05 | 48.57 |
| Alive | In ants, during behavior modification | 58.95 | 33.15 | 84.74 |
| Dead | In ants, recently dead | 45.70 | 25.64 | 65.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000851 | yes |
| Alive | Dead | 0.126993 | no |
| Dead | Fungus | 0.102699 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04893 MAFNEGLKASPFRSDDRLRDPAPSPYDAAHFPSSSPRLTPAPSFHSVDPVRPSQTPRLGHSPFETVFDDPVRLNA PKSHAAGSSSPALHHDTGYYGPSAGPHVAEEIPLQDHPASKNDGVTDHVYDALGPDGNARPSAAPRRSRGKVRIG ELGMFGANRKRIPWVVYFFTAVQVIVFIAEIIRNGVLTGSPIMIKPQFNPMIGPSTQVMINMGARFVACMHNVPE IQGSNIPVLFLCPNATSNDQTCPLSEVCGFGGVPDPTFNNADQKPEPNQWFRFITPIFMHAGLVHIGFNLLLQLT LAKEMEMAIGPMRFFLVYMSAGIFGFVLGGNFAAPALPSTGASGSLFGIIALVLLDLLYSWKERRNPVKDLLYLI LDMVISFALGLLPGLDNFAHIGGFIMGLALGICVLHSPNSLRKRLGNDTPYSAVLPDNSSPPMQRFKGPIGFFKG RKPLWWLWWIVRAAVLTVAIAVFIVLLNNFYTTRTRCTWCKYLSCIPVSNWCDIGTIRQES* |
| Coding | >Ophcf2|04893 ATGGCCTTCAATGAGGGCCTCAAAGCCAGCCCCTTCAGGAGTGACGACCGTCTGCGAGATCCGGCTCCCTCGCCC TACGATGCCGCTCACTTCCCGTCCTCGTCGCCTCGTCTGACGCCCGCGCCCTCATTCCACTCGGTCGACCCCGTG CGGCCCTCGCAGACGCCACGCCTGGGTCATTCTCCCTTTGAGACCGTCTTCGACGACCCTGTTCGCCTCAATGCG CCCAAGTCCCACGCCGCTGGCTCGTCTTCGCCCGCGCTCCACCATGACACTGGCTACTATGGCCCGTCGGCTGGC CCGCACGTGGCCGAAGAGATACCGCTGCAGGACCATCCGGCTTCCAAGAACGACGGCGTGACGGATCATGTGTAC GATGCGCTGGGTCCCGACGGCAATGCGAGGCCGTCTGCTGCACCGAGACGCAGCAGAGGCAAGGTCCGCATAGGC GAGCTGGGAATGTTTGGCGCAAACAGGAAGCGCATTCCCTGGGTCGTCTACTTCTTCACCGCCGTCCAGGTCATC GTCTTCATCGCCGAGATTATCAGGAATGGCGTCCTGACGGGATCGCCCATCATGATCAAGCCCCAATTCAACCCC ATGATCGGCCCTTCGACCCAAGTCATGATCAACATGGGCGCCCGTTTCGTTGCCTGCATGCACAACGTGCCCGAG ATTCAGGGGTCCAACATCCCGGTCCTCTTCCTCTGCCCCAACGCGACGAGCAACGACCAGACGTGTCCGCTCTCC GAAGTCTGCGGCTTCGGCGGCGTCCCTGACCCAACTTTCAACAACGCGGACCAGAAGCCGGAACCCAACCAGTGG TTCCGCTTCATCACGCCCATCTTCATGCACGCCGGCCTCGTCCACATCGGCTTCAACTTGCTACTACAGCTCACG CTCGCCAAGGAGATGGAGATGGCCATCGGGCCCATGCGCTTCTTTCTCGTCTACATGAGCGCCGGTATCTTTGGC TTCGTCCTCGGTGGCAATTTCGCCGCACCCGCGCTGCCCTCGACCGGCGCATCGGGCTCCCTGTTTGGCATCATT GCCTTGGTCCTCCTCGACCTCCTCTACTCGTGGAAAGAGCGTCGCAACCCGGTCAAAGACCTGTTATATCTCATC CTCGACATGGTCATCTCATTCGCGCTCGGTCTCTTGCCGGGTCTCGACAATTTCGCTCACATCGGCGGCTTCATC ATGGGTCTGGCCCTCGGTATCTGCGTCCTGCATTCTCCCAACTCGCTGCGCAAGCGCCTAGGCAACGACACGCCC TACTCGGCCGTCCTCCCCGACAACAGCTCCCCACCGATGCAGCGCTTCAAGGGGCCCATCGGCTTCTTCAAGGGA CGCAAGCCGCTGTGGTGGCTGTGGTGGATCGTCCGGGCCGCCGTCCTGACCGTAGCCATCGCCGTCTTCATCGTC CTGCTCAACAACTTTTATACGACGCGGACTAGGTGCACCTGGTGCAAGTACCTGAGCTGCATTCCCGTCAGCAAC TGGTGTGATATTGGAACTATTCGTCAAGAGAGCTGA |
| Transcript | >Ophcf2|04893 ATGGCCTTCAATGAGGGCCTCAAAGCCAGCCCCTTCAGGAGTGACGACCGTCTGCGAGATCCGGCTCCCTCGCCC TACGATGCCGCTCACTTCCCGTCCTCGTCGCCTCGTCTGACGCCCGCGCCCTCATTCCACTCGGTCGACCCCGTG CGGCCCTCGCAGACGCCACGCCTGGGTCATTCTCCCTTTGAGACCGTCTTCGACGACCCTGTTCGCCTCAATGCG CCCAAGTCCCACGCCGCTGGCTCGTCTTCGCCCGCGCTCCACCATGACACTGGCTACTATGGCCCGTCGGCTGGC CCGCACGTGGCCGAAGAGATACCGCTGCAGGACCATCCGGCTTCCAAGAACGACGGCGTGACGGATCATGTGTAC GATGCGCTGGGTCCCGACGGCAATGCGAGGCCGTCTGCTGCACCGAGACGCAGCAGAGGCAAGGTCCGCATAGGC GAGCTGGGAATGTTTGGCGCAAACAGGAAGCGCATTCCCTGGGTCGTCTACTTCTTCACCGCCGTCCAGGTCATC GTCTTCATCGCCGAGATTATCAGGAATGGCGTCCTGACGGGATCGCCCATCATGATCAAGCCCCAATTCAACCCC ATGATCGGCCCTTCGACCCAAGTCATGATCAACATGGGCGCCCGTTTCGTTGCCTGCATGCACAACGTGCCCGAG ATTCAGGGGTCCAACATCCCGGTCCTCTTCCTCTGCCCCAACGCGACGAGCAACGACCAGACGTGTCCGCTCTCC GAAGTCTGCGGCTTCGGCGGCGTCCCTGACCCAACTTTCAACAACGCGGACCAGAAGCCGGAACCCAACCAGTGG TTCCGCTTCATCACGCCCATCTTCATGCACGCCGGCCTCGTCCACATCGGCTTCAACTTGCTACTACAGCTCACG CTCGCCAAGGAGATGGAGATGGCCATCGGGCCCATGCGCTTCTTTCTCGTCTACATGAGCGCCGGTATCTTTGGC TTCGTCCTCGGTGGCAATTTCGCCGCACCCGCGCTGCCCTCGACCGGCGCATCGGGCTCCCTGTTTGGCATCATT GCCTTGGTCCTCCTCGACCTCCTCTACTCGTGGAAAGAGCGTCGCAACCCGGTCAAAGACCTGTTATATCTCATC CTCGACATGGTCATCTCATTCGCGCTCGGTCTCTTGCCGGGTCTCGACAATTTCGCTCACATCGGCGGCTTCATC ATGGGTCTGGCCCTCGGTATCTGCGTCCTGCATTCTCCCAACTCGCTGCGCAAGCGCCTAGGCAACGACACGCCC TACTCGGCCGTCCTCCCCGACAACAGCTCCCCACCGATGCAGCGCTTCAAGGGGCCCATCGGCTTCTTCAAGGGA CGCAAGCCGCTGTGGTGGCTGTGGTGGATCGTCCGGGCCGCCGTCCTGACCGTAGCCATCGCCGTCTTCATCGTC CTGCTCAACAACTTTTATACGACGCGGACTAGGTGCACCTGGTGCAAGTACCTGAGCTGCATTCCCGTCAGCAAC TGGTGTGATATTGGAACTATTCGTCAAGAGAGCTGA |
| Gene | >Ophcf2|04893 ATGGCCTTCAATGAGGGCCTCAAAGCCAGCCCCTTCAGGAGTGACGACCGTCTGCGAGATCCGGCTCCCTCGCCC TACGATGCCGCTCACTTCCCGTCCTCGTCGCCTCGTCTGACGCCCGCGCCCTCATTCCACTCGGTCGACCCCGTG CGGCCCTCGCAGACGCCACGCCTGGGTCATTCTCCCTTTGAGACCGTCTTCGACGACCCTGTTCGCCTCAATGCG CCCAAGTCCCACGCCGCTGGCTCGTCTTCGCCCGCGCTCCACCATGACACTGGCTACTATGGCCCGTCGGCTGGC CCGCACGTGGCCGAAGAGATACCGCTGCAGGACCATCCGGCTTCCAAGAACGACGGCGTGACGGATCATGTGTAC GATGCGCTGGGTCCCGACGGCAATGCGAGGCCGTCTGCTGCACCGAGACGCAGCAGAGGCAAGGTCCGCATAGGC GAGCTGGGAATGTTTGGCGCAAACAGGAAGCGCATTCCCTGGGTCGTCTACTTCTTCACCGCCGTCCAGGTCATC GTCTTCATCGCCGAGATTATCAGGAATGGTACGACTCCTCTTCCTTTTGCTAGTGTCGTTGATGATTGTGCTGAC GTCTTCGGTTTGCAAGGCGTCCTGACGGGATCGCCCATCATGATCAAGCCCCAATTCAACCCCATGATCGGCCCT TCGACCCAAGTCATGATCAACATGGGCGCCCGTTTCGTTGCCTGCATGCACAACGTGCCCGAGATTCAGGGGTCC AACATCCCGGTCCTCTTCCTCTGCCCCAACGCGACGAGCAACGACCAGACGTGTCCGCTCTCCGAAGTCTGCGGC TTCGGCGGCGTCCCTGACCCAACTTTCAACAACGCGGACCAGAAGCCGGAACCCAACCAGTGGTTCCGCTTCATC ACGCCCATCTTCATGCACGCCGGCCTCGTCCACATCGGCTTCAACTTGCTACTACAGCTCACGCTCGCCAAGGAG ATGGAGATGGCCATCGGGCCCATGCGCTTCTTTCTCGTCTACATGAGCGCCGGTATCTTTGGCTTCGTCCTCGGT GGCAATTTCGCCGCACCCGCGCTGCCCTCGACCGGCGCATCGGGCTCCCTGTTTGGCATCATTGCCTTGGTCCTC CTCGACCTCCTCTACTCGTGGAAAGAGCGTCGCAACCCGGTCAAAGACCTGTTATATCTCATCCTCGACATGGTC ATCTCATTCGCGCTCGGTCTCTTGCCGGGTCTCGACAATTTCGCTCACATCGGCGGCTTCATCATGGGTCTGGCC CTCGGTATCTGCGTCCTGCATTCTCCCAACTCGCTGCGCAAGCGCCTAGGCAACGACACGCCCTACTCGGCCGTC CTCCCCGACAACAGCTCCCCACCGATGCAGCGCTTCAAGGGGCCCATCGGCTTCTTCAAGGGACGCAAGCCGCTG TGGTGGCTGTGGTGGATCGTCCGGGCCGCCGTCCTGACCGTAGCCATCGCCGTCTTCATCGTCCTGCTCAACAAC TTTTATACGACGCGGACTAGGTGCACCTGGTGCAAGTACCTGAGCTGCATTGTGCGTTCCCCCTTTTACCTTTTT TTTTTTCTATACATCTATCAAGGTTGGTGACAGGCTAACTGATGAACTACAGCCCGTCAGCAACTGGTGTGATAT TGGAACTATTCGTCAAGAGAGCTGA |