Protein ID | Ophcf2|04884 |
Gene name | |
Location | scaffold_05:1868073..1869211 |
Strand | + |
Gene length (bp) | 1138 |
Transcript length (bp) | 840 |
Coding sequence length (bp) | 840 |
Protein length (aa) | 280 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 20 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 30 | 52 | 22 |
2 | 65 | 87 | 22 |
3 | 114 | 136 | 22 |
4 | 148 | 170 | 22 |
5 | 238 | 260 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 0.12 | 0.00 | 0.43 |
Alive | In ants, during behavior modification | 0.93 | 0.00 | 2.03 |
Dead | In ants, recently dead | 6.84 | 1.78 | 11.91 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 0.086550 | no |
Alive | Dead | 0.000238 | yes |
Dead | Fungus | 0.076128 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|04884 MEDATVLVPIMAPPPGVTSNFTDPVTNGLILTRLIPVFMAVVVFFAVLRVYTRAFVTRSLGFDDVLAVFSAALIV ADLAVNFYLLHNVSSEGIFGVHLYDVPITRVTGSLMQSIMWLLLLYIVASMSIKLTILTLYHRLFPLVRHVTWMI RIGFALIIASYAAFFIGVLVMCVPSIPRADSFHDRRLSPEAIGLLQCISKCSAIGKVLSVFNPVSDIYLMSIPLP LIKDLRTSRGKKAGAFAIFLTGILACAVSIVGAVFRVSQGLDFGWEIIRTTMVL* |
Coding | >Ophcf2|04884 ATGGAAGACGCCACGGTACTCGTACCCATCATGGCGCCGCCCCCGGGCGTGACGTCCAACTTTACAGATCCGGTT ACGAACGGTCTGATTCTGACGAGGTTGATACCGGTCTTTATGGCTGTTGTCGTCTTTTTCGCCGTCTTGAGAGTC TACACTCGCGCGTTTGTGACTCGTTCTCTAGGCTTTGACGATGTTCTTGCCGTGTTCAGCGCGGCCTTGATTGTC GCCGACTTGGCTGTCAACTTCTACCTGCTTCACAATGTATCAAGTGAAGGCATATTTGGCGTTCACCTCTACGAT GTCCCCATCACCAGAGTCACAGGCTCTCTCATGCAGTCCATCATGTGGCTGCTCCTCCTCTACATAGTAGCCTCC ATGAGCATCAAACTAACCATCCTAACCCTCTACCATCGACTCTTCCCGCTCGTCCGCCACGTCACCTGGATGATC AGGATCGGATTCGCCCTCATAATAGCTTCCTACGCCGCTTTCTTCATCGGCGTTCTGGTCATGTGCGTGCCAAGC ATACCACGAGCAGACAGCTTTCACGACAGACGGCTATCTCCGGAAGCCATCGGTCTCCTGCAATGCATCTCCAAA TGCAGCGCCATCGGCAAGGTTCTCTCCGTCTTCAACCCCGTATCGGACATCTACCTCATGTCTATCCCTCTGCCA CTGATCAAGGATCTGAGGACATCTCGCGGGAAGAAAGCCGGCGCCTTCGCCATCTTCCTCACCGGCATCCTAGCC TGCGCCGTTTCCATCGTGGGCGCTGTTTTCCGCGTTTCCCAGGGCCTCGATTTTGGCTGGGAGATTATCCGAACT ACCATGGTCTTGTAA |
Transcript | >Ophcf2|04884 ATGGAAGACGCCACGGTACTCGTACCCATCATGGCGCCGCCCCCGGGCGTGACGTCCAACTTTACAGATCCGGTT ACGAACGGTCTGATTCTGACGAGGTTGATACCGGTCTTTATGGCTGTTGTCGTCTTTTTCGCCGTCTTGAGAGTC TACACTCGCGCGTTTGTGACTCGTTCTCTAGGCTTTGACGATGTTCTTGCCGTGTTCAGCGCGGCCTTGATTGTC GCCGACTTGGCTGTCAACTTCTACCTGCTTCACAATGTATCAAGTGAAGGCATATTTGGCGTTCACCTCTACGAT GTCCCCATCACCAGAGTCACAGGCTCTCTCATGCAGTCCATCATGTGGCTGCTCCTCCTCTACATAGTAGCCTCC ATGAGCATCAAACTAACCATCCTAACCCTCTACCATCGACTCTTCCCGCTCGTCCGCCACGTCACCTGGATGATC AGGATCGGATTCGCCCTCATAATAGCTTCCTACGCCGCTTTCTTCATCGGCGTTCTGGTCATGTGCGTGCCAAGC ATACCACGAGCAGACAGCTTTCACGACAGACGGCTATCTCCGGAAGCCATCGGTCTCCTGCAATGCATCTCCAAA TGCAGCGCCATCGGCAAGGTTCTCTCCGTCTTCAACCCCGTATCGGACATCTACCTCATGTCTATCCCTCTGCCA CTGATCAAGGATCTGAGGACATCTCGCGGGAAGAAAGCCGGCGCCTTCGCCATCTTCCTCACCGGCATCCTAGCC TGCGCCGTTTCCATCGTGGGCGCTGTTTTCCGCGTTTCCCAGGGCCTCGATTTTGGCTGGGAGATTATCCGAACT ACCATGGTCTTGTAA |
Gene | >Ophcf2|04884 ATGGAAGACGCCACGGTACTCGTACCCATCATGGCGCCGCCCCCGGGCGTGACGTCCAACTTTACAGATCCGGTT ACGAACGGTCTGATTCTGACGAGGTTGATACCGGTCTTTATGGCTGTTGTCGTCTTTTTCGCCGTCTTGAGAGTC TACACTCGCGCGTTTGTGACTCGTTCTCTAGGCTTTGACGATGGTAAGCTGCGTGGGAATGAAGATCAAGGATGC CATCTGATTGCTCGTACATTTAGTTCTTGCCGTGTTCAGCGCGGTGAGTTCCACATCACATTGATGTCTGGCGAG ACGTACACTCATGTTTCTTGTTGTAGGCCTTGATTGTCGCCGACTTGGCTGTCAACTTCTACCGTACGTTGCTGC AACGATGAGATTTCCCACGACACCTTCGCTGGCTTTACTGACTAGCAACGACTGAAGTGCTTCACAATGTATCAA GTGAAGGCATATTTGGCGTTCACCTCTACGATGTCCCCATCACCAGAGTCACAGGCTCTCTCATGCAGGTTCGCT CCATCTCAACCCCCCATCTCAACCCCAAACATCAGATACAGCTGGCTCATCAACTCCAGTCCATCATGTGGCTGC TCCTCCTCTACATAGTAGCCTCCATGAGCATCAAACTAACCATCCTAACCCTCTACCATCGACTCTTCCCGCTCG TCCGCCACGTCACCTGGATGATCAGGATCGGATTCGCCCTCATAATAGCTTCCTACGCCGCTTTCTTCATCGGCG TTCTGGTCATGTGCGTGCCAAGCATACCACGAGCAGACAGCTTTCACGACAGACGGCTATCTCCGGAAGCCATCG GTCTCCTGCAATGCATCTCCAAATGCAGCGCCATCGGCAAGGTTCTCTCCGTCTTCAACCCCGTATCGGACATCT ACCTCATGTCTATCCCTCTGCCACTGATCAAGGATCTGAGGACATCTCGCGGGAAGAAAGCCGGCGCCTTCGCCA TCTTCCTCACCGGCATCCTGTACGTCTTTCTCACGTAGATTCGCTCACGTAACTGATAGAATCATCCAGAGCCTG CGCCGTTTCCATCGTGGGCGCTGTTTTCCGCGTTTCCCAGGGCCTCGATTTTGGCTGGGAGATTATCCGAACTAC CATGGTCTTGTAA |