© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04873 |
| Gene name | |
| Location | scaffold_05:1832633..1834091 |
| Strand | + |
| Gene length (bp) | 1458 |
| Transcript length (bp) | 843 |
| Coding sequence length (bp) | 843 |
| Protein length (aa) | 281 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16123 | HAGH_C | Hydroxyacylglutathione hydrolase C-terminus | 1.3E-22 | 202 | 279 |
| PF00753 | Lactamase_B | Metallo-beta-lactamase superfamily | 2.8E-11 | 37 | 97 |
| PF00753 | Lactamase_B | Metallo-beta-lactamase superfamily | 1.2E-04 | 133 | 201 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 302.06 | 164.17 | 439.95 |
| Alive | In ants, during behavior modification | 123.50 | 68.55 | 178.46 |
| Dead | In ants, recently dead | 169.48 | 93.83 | 245.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.059923 | no |
| Dead | Fungus | 0.001768 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04873 MFRLLPRRPLSVPTTAFAAACRAMHIKAIPMWVGSSNNYAYLVVDDESKEAVIIDPANPPEVTPLLKEAIDNGGI KLKAIVNTHHHWDHAGGNKKLLADLGSRPVEVVGGKDCEGVTRTPAHGETWRLGDVTVRSVHTPCHTQDSICYYM EDRTGRAVFTGDTLFVGGCGKFFEGSADEMHEALNKRLANLPDDTVVYPGHEYTASNAKFAMSVQPSQAIDRLRQ YAAKETVTTGKFTIGDEKKHNVFMRVDDPDIQMATGESDPVGVMGKLREMKNGFK* |
| Coding | >Ophcf2|04873 ATGTTTCGGCTCCTCCCCCGCAGGCCGCTATCCGTCCCAACCACCGCTTTCGCTGCTGCCTGTCGCGCCATGCAT ATCAAGGCGATACCCATGTGGGTGGGGAGCAGCAATAACTACGCCTACCTGGTGGTCGACGACGAGTCTAAAGAG GCCGTCATCATCGATCCGGCGAATCCACCCGAGGTTACTCCGCTGTTGAAGGAAGCCATCGATAACGGCGGCATC AAGCTGAAAGCCATCGTCAACACGCACCACCACTGGGACCACGCCGGCGGGAACAAGAAGCTGCTTGCCGACCTG GGATCCCGACCGGTTGAGGTGGTGGGCGGTAAGGACTGTGAGGGCGTGACGAGGACGCCGGCTCATGGTGAGACG TGGAGGCTGGGCGACGTTACTGTCCGGAGCGTGCACACGCCGTGCCACACGCAGGATAGTATCTGCTACTACATG GAGGACCGGACGGGGAGGGCCGTCTTCACCGGCGACACGCTGTTTGTCGGCGGATGCGGCAAGTTCTTTGAAGGC TCGGCGGACGAGATGCACGAGGCGCTCAACAAGCGGCTTGCCAACCTTCCGGACGACACCGTCGTATACCCGGGA CACGAGTACACGGCTTCGAATGCAAAGTTTGCCATGTCGGTGCAGCCAAGTCAGGCTATCGACCGGCTCCGGCAG TATGCGGCCAAGGAGACGGTGACGACGGGCAAGTTTACGATTGGCGATGAAAAGAAACACAACGTCTTTATGCGC GTTGATGACCCGGATATCCAGATGGCCACTGGCGAGTCGGATCCCGTCGGCGTCATGGGGAAGCTGCGTGAGATG AAGAATGGGTTTAAGTGA |
| Transcript | >Ophcf2|04873 ATGTTTCGGCTCCTCCCCCGCAGGCCGCTATCCGTCCCAACCACCGCTTTCGCTGCTGCCTGTCGCGCCATGCAT ATCAAGGCGATACCCATGTGGGTGGGGAGCAGCAATAACTACGCCTACCTGGTGGTCGACGACGAGTCTAAAGAG GCCGTCATCATCGATCCGGCGAATCCACCCGAGGTTACTCCGCTGTTGAAGGAAGCCATCGATAACGGCGGCATC AAGCTGAAAGCCATCGTCAACACGCACCACCACTGGGACCACGCCGGCGGGAACAAGAAGCTGCTTGCCGACCTG GGATCCCGACCGGTTGAGGTGGTGGGCGGTAAGGACTGTGAGGGCGTGACGAGGACGCCGGCTCATGGTGAGACG TGGAGGCTGGGCGACGTTACTGTCCGGAGCGTGCACACGCCGTGCCACACGCAGGATAGTATCTGCTACTACATG GAGGACCGGACGGGGAGGGCCGTCTTCACCGGCGACACGCTGTTTGTCGGCGGATGCGGCAAGTTCTTTGAAGGC TCGGCGGACGAGATGCACGAGGCGCTCAACAAGCGGCTTGCCAACCTTCCGGACGACACCGTCGTATACCCGGGA CACGAGTACACGGCTTCGAATGCAAAGTTTGCCATGTCGGTGCAGCCAAGTCAGGCTATCGACCGGCTCCGGCAG TATGCGGCCAAGGAGACGGTGACGACGGGCAAGTTTACGATTGGCGATGAAAAGAAACACAACGTCTTTATGCGC GTTGATGACCCGGATATCCAGATGGCCACTGGCGAGTCGGATCCCGTCGGCGTCATGGGGAAGCTGCGTGAGATG AAGAATGGGTTTAAGTGA |
| Gene | >Ophcf2|04873 ATGTTTCGGCTCCTCCCCCGCAGGCCGCTATCCGTCCCAACCACCGCTGTGAGTGATCACTGATGATACGGAGAT GAACCCGCGCCCGAGTTGGGCAGTTCGGCTGAAGCCACGGGCGCAACAAGTTCGCTGCTGCCTGTCGCGCCATGC ATATCAAGGCGATACCCATGTGTGAGTTGCCTCGTCCATGTATGTACGATGCCATGTACGAAGTATTCTGACTCG TCGTCGCAGGGGTGGGGAGCAGCAATAACTACGCCTACCTGGTGGTCGACGACGAGTCTAAAGAGGCCGTCATCA TCGATCCGGCGAATCCACCCGAGTGCGTTCTTCCGTTGTTTGCGTCGTGCGGGACCGGGATCGGGTAGGAGGGGG GGGGGGGGTAAAGGCTTACGGACCTGACAAGGGTTACTCCGCTGTTGAAGGAAGCCATCGATAACGGCGGCATCA AGCTGAAAGCCATCGTCAACACGCACCAGTCAGTTTCTACCCGTCCGGGGGGGGGGGGGGGGAAGGGCGGGAGGC ACAGCGACTGACACGGCAGCAGCCACTGGGACCACGCCGGCGGGAACAAGAAGCTGGTGAGAAACAAGTAACCCG GTGGGGCAAAGGGGCTTCTTTATGCTTGCTTGCTGTGTGTGGGATGATGTTGCTGACGCAGGGAGGAGCTTGCCG ACCTGGGATCCCGACCGGTTGAGGTGGTGGGCGGTAAGGACTGTGAGGGCGTGACGAGGACGCCGGCTCATGGTG AGACGTGGAGGCTGGGCGACGTTACTGTCCGGAGCGTGCACACGCCGTGCCACACGCAGGATAGTATCTGCTACT ACATGGAGGACCGGACGGGGAGGGCCGTCTTCACCGGCGACACGCTGTTTGTCGGCGGTGCGTTGTTCCCTCCGC CCCGTGGATGGGAAGAAGAGTCGATCTGACAAGAGGTGGGGGGGGTGTTCAGGATGCGGCAAGTTCTTTGAAGGC TCGGCGGACGAGATGCACGAGGCGCTCAACAAGCGGCTTGCCAACCTTCCGGACGACACCGTCGTATACGTGAGA CGGACGCCCCCTTTTGAACGACCCAAGTTCGCTCTTTTGCTGACGGGTTGCCCGGGTGGACACCCGTTTTCAACA GCCGGGACACGAGTACACGGCTTCGAATGCAAAGTTTGCCATGTCGGTGCAGCCAAGTCAGGCTATCGACCGGCT CCGGCAGTATGCGGCCAAGGAGACGGTGACGACGGGCAAGTTTACGATTGGCGATGAAAAGGTTACCTACCACCT CGTTTCCCTTGGGGCCGGAGAGCCCGAAGAGAGAGGTGTATGTAAGTTGGCTGACGTGAAACGATGCAGAAACAC AACGTCTTTATGCGCGTTGATGACCCGGATATCCAGATGGCCACTGGCGAGTCGGATCCCGTCGGCGTCATGGGG AAGCTGCGTGAGATGAAGAATGGGTTTAAGTGA |