Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04853
Gene name
Locationscaffold_05:1785528..1787464
Strand+
Gene length (bp)1936
Transcript length (bp)1662
Coding sequence length (bp)1662
Protein length (aa) 554

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 55 77 22
3 102 124 22
4 133 155 22
5 184 206 22
6 218 237 19
7 257 279 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 23.16 11.94 34.37
Alive In ants, during behavior modification 11.51 4.80 18.22
Dead In ants, recently dead 8.37 3.28 13.46

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.002625 yes
Alive Dead 0.157078 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04853
MADLSDFVKQDVDLHQTRGPALIAVSVVFLVLAYISVGLRTYARAYMTRSFMLDDWFMLIALVTMTLQCSFVLAG
VGRGLGKHNAALSVPDLVAALMWQSNAAAIYILNMMFVKLSIGFFLLRLSNLWAIYKWILWVSLAIVVGWSVGLF
FWDIFQCIPVEKQWDFRIEKGHCASPEAIVDSVIALTVLTVSSDWLYALLPIPMVWNVKMTRQAKVTVVIILGLG
IFASIATLVRLRYLNGLKQIDDLSYTGSDTLIWSIIEPGVAIFAASMATIRPLLRYCKIKGFTTQFTRTRTGDAS
QVAKEKEPEDPGKKPAGQNAGAFNISEISLNSPGGVIVAGSDQQDSPGFVNNNVRRKELTPLEVGKQQAQQRKES
VKKGFWAEYGIRDLSFESIDYEIEDDGEQIIMTRTSTHYGNLSLNNINSPTSAQLQPTQSRKLSHSKSDTFFIED
HRRLSTWQHPPLSRGDADGDVDLEAQSPVKGKGRADDFVEEEEEQQQQQQQQQQRGDEERQGEEEEGGAEEEPEE
QPEEQPEEELSDPEDDERIWDEVRRRWC*
Coding >Ophcf2|04853
ATGGCTGATCTGTCCGACTTCGTCAAACAAGATGTCGATCTCCACCAGACTCGGGGGCCCGCCTTGATAGCGGTT
TCCGTCGTCTTTCTCGTCCTCGCATACATCTCCGTCGGGCTGCGCACTTACGCGAGAGCATACATGACGAGGAGC
TTTATGCTCGACGATTGGTTCATGCTGATAGCCCTGGTGACAATGACGCTGCAATGTTCTTTCGTCCTCGCTGGC
GTCGGCAGGGGGCTGGGCAAACACAATGCGGCACTCTCTGTCCCAGACCTGGTTGCGGCTCTCATGTGGCAATCC
AACGCGGCCGCCATCTACATTCTCAACATGATGTTTGTCAAGCTCAGCATCGGCTTCTTCCTCCTTCGGCTCAGC
AACTTGTGGGCCATCTACAAATGGATCCTCTGGGTCAGTCTCGCCATCGTCGTTGGCTGGAGTGTCGGTCTCTTT
TTTTGGGACATCTTCCAATGCATCCCCGTTGAGAAGCAGTGGGACTTTCGCATCGAGAAAGGGCATTGCGCATCT
CCCGAGGCAATCGTCGACTCCGTCATTGCTCTTACCGTCCTGACTGTCTCGTCTGATTGGCTCTACGCCCTCCTC
CCCATTCCCATGGTCTGGAACGTCAAAATGACTCGTCAGGCCAAAGTGACTGTCGTCATCATCCTTGGTCTCGGC
ATATTTGCAAGTATCGCGACACTCGTCCGGCTGAGATATCTGAATGGGTTGAAGCAGATAGACGACCTGAGTTAC
ACAGGATCTGATACGCTCATCTGGTCCATCATCGAACCGGGCGTCGCCATCTTCGCAGCCAGCATGGCGACGATC
CGACCCCTCTTGCGCTACTGCAAAATCAAAGGCTTCACCACTCAGTTCACCAGGACGCGCACGGGCGATGCGTCG
CAAGTCGCCAAGGAGAAGGAGCCCGAAGACCCAGGCAAGAAGCCGGCCGGCCAGAACGCGGGAGCCTTTAACATC
AGCGAGATATCGCTCAACAGCCCCGGAGGCGTCATCGTGGCCGGATCGGATCAACAAGACTCGCCCGGCTTCGTC
AATAATAACGTCAGGAGGAAGGAATTGACGCCGCTCGAGGTGGGCAAGCAGCAGGCACAGCAGCGCAAGGAGTCG
GTAAAGAAGGGCTTCTGGGCCGAGTACGGCATCAGAGACTTGTCGTTTGAGAGCATCGACTACGAGATTGAAGAC
GACGGCGAGCAGATCATCATGACGAGGACGTCGACTCATTACGGCAACCTATCGCTCAACAACATCAACAGCCCC
ACCAGCGCGCAGCTGCAGCCGACGCAGAGCAGGAAGCTCAGTCATTCCAAGAGCGATACCTTTTTCATCGAGGAT
CACAGGCGGCTCTCGACGTGGCAGCATCCGCCCTTGTCGAGGGGTGACGCCGACGGGGACGTCGATTTGGAGGCG
CAGAGCCCGGTCAAGGGGAAAGGAAGGGCGGATGACTTTGTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCGAGGGGATGAGGAGCGGCAAGGGGAGGAAGAGGAGGGGGGCGCCGAAGAGGAGCCGGAAGAG
CAGCCGGAAGAGCAGCCGGAAGAGGAGCTTTCGGATCCGGAAGACGATGAACGTATATGGGACGAGGTGAGGCGC
AGATGGTGCTGA
Transcript >Ophcf2|04853
ATGGCTGATCTGTCCGACTTCGTCAAACAAGATGTCGATCTCCACCAGACTCGGGGGCCCGCCTTGATAGCGGTT
TCCGTCGTCTTTCTCGTCCTCGCATACATCTCCGTCGGGCTGCGCACTTACGCGAGAGCATACATGACGAGGAGC
TTTATGCTCGACGATTGGTTCATGCTGATAGCCCTGGTGACAATGACGCTGCAATGTTCTTTCGTCCTCGCTGGC
GTCGGCAGGGGGCTGGGCAAACACAATGCGGCACTCTCTGTCCCAGACCTGGTTGCGGCTCTCATGTGGCAATCC
AACGCGGCCGCCATCTACATTCTCAACATGATGTTTGTCAAGCTCAGCATCGGCTTCTTCCTCCTTCGGCTCAGC
AACTTGTGGGCCATCTACAAATGGATCCTCTGGGTCAGTCTCGCCATCGTCGTTGGCTGGAGTGTCGGTCTCTTT
TTTTGGGACATCTTCCAATGCATCCCCGTTGAGAAGCAGTGGGACTTTCGCATCGAGAAAGGGCATTGCGCATCT
CCCGAGGCAATCGTCGACTCCGTCATTGCTCTTACCGTCCTGACTGTCTCGTCTGATTGGCTCTACGCCCTCCTC
CCCATTCCCATGGTCTGGAACGTCAAAATGACTCGTCAGGCCAAAGTGACTGTCGTCATCATCCTTGGTCTCGGC
ATATTTGCAAGTATCGCGACACTCGTCCGGCTGAGATATCTGAATGGGTTGAAGCAGATAGACGACCTGAGTTAC
ACAGGATCTGATACGCTCATCTGGTCCATCATCGAACCGGGCGTCGCCATCTTCGCAGCCAGCATGGCGACGATC
CGACCCCTCTTGCGCTACTGCAAAATCAAAGGCTTCACCACTCAGTTCACCAGGACGCGCACGGGCGATGCGTCG
CAAGTCGCCAAGGAGAAGGAGCCCGAAGACCCAGGCAAGAAGCCGGCCGGCCAGAACGCGGGAGCCTTTAACATC
AGCGAGATATCGCTCAACAGCCCCGGAGGCGTCATCGTGGCCGGATCGGATCAACAAGACTCGCCCGGCTTCGTC
AATAATAACGTCAGGAGGAAGGAATTGACGCCGCTCGAGGTGGGCAAGCAGCAGGCACAGCAGCGCAAGGAGTCG
GTAAAGAAGGGCTTCTGGGCCGAGTACGGCATCAGAGACTTGTCGTTTGAGAGCATCGACTACGAGATTGAAGAC
GACGGCGAGCAGATCATCATGACGAGGACGTCGACTCATTACGGCAACCTATCGCTCAACAACATCAACAGCCCC
ACCAGCGCGCAGCTGCAGCCGACGCAGAGCAGGAAGCTCAGTCATTCCAAGAGCGATACCTTTTTCATCGAGGAT
CACAGGCGGCTCTCGACGTGGCAGCATCCGCCCTTGTCGAGGGGTGACGCCGACGGGGACGTCGATTTGGAGGCG
CAGAGCCCGGTCAAGGGGAAAGGAAGGGCGGATGACTTTGTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCGAGGGGATGAGGAGCGGCAAGGGGAGGAAGAGGAGGGGGGCGCCGAAGAGGAGCCGGAAGAG
CAGCCGGAAGAGCAGCCGGAAGAGGAGCTTTCGGATCCGGAAGACGATGAACGTATATGGGACGAGGTGAGGCGC
AGATGGTGCTGA
Gene >Ophcf2|04853
ATGGCTGATCTGTCCGACTTCGTCAAACAAGATGTCGATCTCCACCAGACTCGGGGGCCCGCCTTGATAGCGGTT
TCCGTCGTCTTTCTCGTCCTCGCATACATCTCCGTCGGGCTGCGCACTTACGCGAGAGCATACATGACGAGGAGC
TTTATGCTCGACGATTGGTTCATGCTGATAGCCCTGGTCAGAAGTCCCTCGCCCTTGGCCAGGACGACGAGAAAG
ACTAACAAGTGCGTCGACAGGTGACAATGACGCTGCAATGTTCTTTCGTCCTCGCTGGCGTCGGCAGGGGGCTGG
GCAAACACAATGCGGCACTCTCTGTCCCAGACCTGGTTGCGGCTCTCATGGTGCGTGATTCGTCGGCCTTGTTGC
TCGCAGTCGTGGCTCACACCCGGGACAGTGGCAATCCAACGCGGCCGCCATCTACATTCTCAACATGATGTTTGT
CAAGCTCAGCATCGGCTTCTTCCTCCTTCGGCTCAGCAACTTGTGGGCCATCTACAAATGGATCCTCTGGGTCAG
TCTCGCCATCGTCGTTGGCTGGAGTGTCGGTCTCTTTTTTTGGGACATCTTCCAATGCATCCCCGTTGAGAAGCA
GTGGGACTTTCGCATCGAGAAAGGGCATTGCGCATCTCCCGAGGCAATCGTCGACTCCGTCATTGCTCTTACCGT
CCTGACTGTCTCGTCTGATTGGCTCTACGTGAGTTTCCTGGCGTTGTGGCAGGGTTATGGCAGCTGACGTCGTTG
CTTTGAAGGCCCTCCTCCCCATTCCCATGGTCTGGAACGTCAAAATGACTCGTCAGGCCAAAGTGACTGTCGTCA
TCATCCTTGGTCTCGGCATATTGTGCGTTTGTTCCTGCTTTGCGGCAGCTCGTGCTCCCCGGGCTGACTCGAAGC
AGTGCAAGTATCGCGACACTCGTCCGGCTGAGATATCTGAATGGGTTGAAGCAGATAGACGACCTGAGTTGTGAG
TAGAACGGTGGAATGGTGAGGCAGTCTCGTCTCCTAACACTGTATAGACACAGGATCTGATACGCTCATCTGGTC
CATCATCGAACCGGGCGTCGCCATCTTCGCAGCCAGCATGGCGACGATCCGACCCCTCTTGCGCTACTGCAAAAT
CAAAGGCTTCACCACTCAGTTCACCAGGACGCGCACGGGCGATGCGTCGCAAGTCGCCAAGGAGAAGGAGCCCGA
AGACCCAGGCAAGAAGCCGGCCGGCCAGAACGCGGGAGCCTTTAACATCAGCGAGATATCGCTCAACAGCCCCGG
AGGCGTCATCGTGGCCGGATCGGATCAACAAGACTCGCCCGGCTTCGTCAATAATAACGTCAGGAGGAAGGAATT
GACGCCGCTCGAGGTGGGCAAGCAGCAGGCACAGCAGCGCAAGGAGTCGGTAAAGAAGGGCTTCTGGGCCGAGTA
CGGCATCAGAGACTTGTCGTTTGAGAGCATCGACTACGAGATTGAAGACGACGGCGAGCAGATCATCATGACGAG
GACGTCGACTCATTACGGCAACCTATCGCTCAACAACATCAACAGCCCCACCAGCGCGCAGCTGCAGCCGACGCA
GAGCAGGAAGCTCAGTCATTCCAAGAGCGATACCTTTTTCATCGAGGATCACAGGCGGCTCTCGACGTGGCAGCA
TCCGCCCTTGTCGAGGGGTGACGCCGACGGGGACGTCGATTTGGAGGCGCAGAGCCCGGTCAAGGGGAAAGGAAG
GGCGGATGACTTTGTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGGGATGAGGA
GCGGCAAGGGGAGGAAGAGGAGGGGGGCGCCGAAGAGGAGCCGGAAGAGCAGCCGGAAGAGCAGCCGGAAGAGGA
GCTTTCGGATCCGGAAGACGATGAACGTATATGGGACGAGGTGAGGCGCAGATGGTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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