© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04823 |
| Gene name | |
| Location | scaffold_05:1705098..1705725 |
| Strand | + |
| Gene length (bp) | 627 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 516 |
| Protein length (aa) | 172 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 46 | 68 | 22 |
| 2 | 81 | 103 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 61.03 | 27.80 | 94.26 |
| Alive | In ants, during behavior modification | 80.06 | 38.70 | 121.42 |
| Dead | In ants, recently dead | 83.23 | 40.37 | 126.09 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.257984 | no |
| Alive | Dead | 0.878413 | no |
| Dead | Fungus | 0.192121 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04823 MDDANPNPLLAALAFVVRIRWASHLIRIVRLIFLPVRLAIAGLSRIASVLAVVFAPAVYIFALCLWLSKAVVALI LGLEPLYKFFSVAVTIGITSGIILALTSSLITNLLGMQDDPDVSDRQQKLQLEPSPAVPPSWESDWFWAESSSPQ AKRRQPSGLLSQTIHEEDSDI* |
| Coding | >Ophcf2|04823 ATGGACGACGCCAATCCAAATCCCCTCCTCGCCGCCCTCGCCTTCGTCGTCCGTATCCGCTGGGCCTCGCACCTT ATTCGTATCGTTCGCCTCATCTTCCTGCCCGTTCGCCTTGCTATCGCGGGTCTCTCTCGCATCGCCTCCGTTCTC GCCGTCGTCTTCGCCCCGGCCGTGTACATATTTGCTCTCTGTCTGTGGCTGTCCAAGGCTGTCGTTGCCTTGATC CTTGGCTTAGAGCCCTTGTATAAATTTTTCAGCGTTGCCGTTACCATCGGCATCACCTCAGGCATCATTCTTGCA CTCACATCCTCCCTCATCACAAACTTGCTCGGCATGCAAGACGATCCAGACGTCTCAGATCGTCAGCAGAAGCTT CAGCTGGAGCCTTCGCCGGCGGTACCGCCCTCGTGGGAATCCGACTGGTTTTGGGCCGAGTCCTCCTCGCCTCAG GCCAAACGTCGGCAGCCTTCTGGCCTCCTATCTCAGACCATTCACGAAGAGGACTCGGACATATAG |
| Transcript | >Ophcf2|04823 ATGGACGACGCCAATCCAAATCCCCTCCTCGCCGCCCTCGCCTTCGTCGTCCGTATCCGCTGGGCCTCGCACCTT ATTCGTATCGTTCGCCTCATCTTCCTGCCCGTTCGCCTTGCTATCGCGGGTCTCTCTCGCATCGCCTCCGTTCTC GCCGTCGTCTTCGCCCCGGCCGTGTACATATTTGCTCTCTGTCTGTGGCTGTCCAAGGCTGTCGTTGCCTTGATC CTTGGCTTAGAGCCCTTGTATAAATTTTTCAGCGTTGCCGTTACCATCGGCATCACCTCAGGCATCATTCTTGCA CTCACATCCTCCCTCATCACAAACTTGCTCGGCATGCAAGACGATCCAGACGTCTCAGATCGTCAGCAGAAGCTT CAGCTGGAGCCTTCGCCGGCGGTACCGCCCTCGTGGGAATCCGACTGGTTTTGGGCCGAGTCCTCCTCGCCTCAG GCCAAACGTCGGCAGCCTTCTGGCCTCCTATCTCAGACCATTCACGAAGAGGACTCGGACATATAG |
| Gene | >Ophcf2|04823 ATGGACGACGCCAATCCAAATCCCCTCCTCGCCGCCCTCGCCTTCGTCGTCCGTATCCGCTGGGCCTCGCACCTT ATTCGTATCGTTCGCCTCATCTTCCTGCCCGTTCGCCTTGCTATCGCGGGTCTCTCTCGCATCGCCTCCGTTCTC GCCGTCGTCTTCGCCCCGGCCGTGTACATATTTGCTCTCTGTCTGTGGCTGTCCAAGGCTGTCGTTGCCTTGATC CTTGGCTTAGAGGTCCGTCTCTAGGTATCAGAACCGGATGAGCATTCGCTGACTTTCTCGCTCATCAGCCCTTGT ATAAATTTGTGAGCGTTTCTGGTTCCGTCCCTCCCTTCTTCCCTCGACTTACTCTCCTCCCAGTTCAGCGTTGCC GTTACCATCGGCATCACCTCAGGCATCATTCTTGCACTCACATCCTCCCTCATCACAAACTTGCTCGGCATGCAA GACGATCCAGACGTCTCAGATCGTCAGCAGAAGCTTCAGCTGGAGCCTTCGCCGGCGGTACCGCCCTCGTGGGAA TCCGACTGGTTTTGGGCCGAGTCCTCCTCGCCTCAGGCCAAACGTCGGCAGCCTTCTGGCCTCCTATCTCAGACC ATTCACGAAGAGGACTCGGACATATAG |