Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04806
Gene name
Location	scaffold_05:1636972..1637763
Strand	+
Gene length (bp)	791
Transcript length (bp)	615
Coding sequence length (bp)	615
Protein length (aa)	205

PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 16	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	70	92	22
2	113	135	22
3	174	196	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	0.86	0.00	1.94
Alive	In ants, during behavior modification	385.40	85.66	685.15
Dead	In ants, recently dead	116.98	64.04	169.93

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.000238	yes
Dead	Fungus	0.000238	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04806 MSSLALLSLLQLVVAAVGVWSKLRSGFGLVEVPSPARLIEPGCWLEDLGGLIPFAIMVEMISPVRKLRAVSLLGL LSAILGFAAAMPALSLWILQAAEHKALSRRQRSVLGKLAFLSAVTHVGAFVVALSTACLGLDSSPWHVMNSLLSG PDHPGRLPEKALREARLRQINEMTGTSSGFFMAAGLLLLRLEIWLLDLRPEVRW*
Coding	>Ophcf2\|04806 ATGTCGTCGCTTGCTCTTCTGAGCCTCCTTCAGCTGGTGGTGGCGGCCGTCGGCGTCTGGAGCAAGCTGCGGTCT GGCTTCGGGCTGGTAGAGGTGCCGAGTCCGGCTCGTCTGATTGAGCCCGGCTGTTGGCTCGAGGATCTTGGAGGG CTCATCCCGTTTGCCATCATGGTGGAGATGATATCACCGGTCAGGAAGTTGAGAGCCGTCTCCTTACTGGGCTTG CTATCGGCCATCTTGGGCTTCGCCGCCGCCATGCCGGCCCTCTCCCTGTGGATCCTGCAGGCAGCCGAGCACAAG GCCCTCAGCCGGAGACAGAGGTCCGTCCTAGGCAAGCTAGCCTTCCTATCGGCTGTGACGCACGTGGGAGCCTTT GTCGTGGCACTTTCCACGGCCTGTCTCGGCCTCGACTCCAGCCCCTGGCACGTCATGAACAGCCTGCTATCCGGC CCGGACCACCCCGGCCGTCTCCCGGAAAAGGCCTTGCGGGAGGCCCGTCTGCGGCAGATCAACGAGATGACGGGC ACGTCGAGCGGCTTCTTCATGGCGGCCGGCTTGCTGCTGCTCAGGCTGGAGATCTGGTTGCTGGACCTGCGGCCG GAAGTGCGGTGGTGA
Transcript	>Ophcf2\|04806 ATGTCGTCGCTTGCTCTTCTGAGCCTCCTTCAGCTGGTGGTGGCGGCCGTCGGCGTCTGGAGCAAGCTGCGGTCT GGCTTCGGGCTGGTAGAGGTGCCGAGTCCGGCTCGTCTGATTGAGCCCGGCTGTTGGCTCGAGGATCTTGGAGGG CTCATCCCGTTTGCCATCATGGTGGAGATGATATCACCGGTCAGGAAGTTGAGAGCCGTCTCCTTACTGGGCTTG CTATCGGCCATCTTGGGCTTCGCCGCCGCCATGCCGGCCCTCTCCCTGTGGATCCTGCAGGCAGCCGAGCACAAG GCCCTCAGCCGGAGACAGAGGTCCGTCCTAGGCAAGCTAGCCTTCCTATCGGCTGTGACGCACGTGGGAGCCTTT GTCGTGGCACTTTCCACGGCCTGTCTCGGCCTCGACTCCAGCCCCTGGCACGTCATGAACAGCCTGCTATCCGGC CCGGACCACCCCGGCCGTCTCCCGGAAAAGGCCTTGCGGGAGGCCCGTCTGCGGCAGATCAACGAGATGACGGGC ACGTCGAGCGGCTTCTTCATGGCGGCCGGCTTGCTGCTGCTCAGGCTGGAGATCTGGTTGCTGGACCTGCGGCCG GAAGTGCGGTGGTGA
Gene	>Ophcf2\|04806 ATGTCGTCGCTTGCTCTTCTGAGCCTCCTTCAGCTGGTGGTGGCGGCCGTCGGCGTCTGGAGCAAGCTGCGGTCT GGCTTCGGGCTGGTAGAGGTGCCGAGTCCGGCTCGTCTGATTGAGCCCGGCTGTTGGCTCGAGGATCTTGGAGGG GTATCTGTTGTTTTGTTATGGGAACAATGGCCTTGGTTCTCTCTGCATTTGTTTCTCTATCTTGGGCAGCTCATC CCGTTTGCCATCATGGTGGAGATGATATCACCGGTCAGGAAGTTGAGGTAAGTCAAGCCGTTACGAATTCCCGAC AACTACATCAGCTGATCCGTCTTCAAGAGCCGTCTCCTTACTGGGCTTGCTATCGGCCATCTTGGGCTTCGCCGC CGCCATGCCGGCCCTCTCCCTGTGGATCCTGCAGGCAGCCGAGCACAAGGCCCTCAGCCGGAGACAGAGGTCCGT CCTAGGCAAGCTAGCCTTCCTATCGGCTGTGACGCACGTGGGAGCCTTTGTCGTGGCACTTTCCACGGCCTGTCT CGGCCTCGACTCCAGCCCCTGGCACGTCATGAACAGCCTGCTATCCGGCCCGGACCACCCCGGCCGTCTCCCGGA AAAGGCCTTGCGGGAGGCCCGTCTGCGGCAGATCAACGAGATGACGGGCACGTCGAGCGGCTTCTTCATGGCGGC CGGCTTGCTGCTGCTCAGGCTGGAGAGTTGCGGCCGGGGGATGAGCGTCGGGTTGGTGGCCTTGATGTTTCTCGT AAGTCTGGTTGCTGGACCTGCGGCCGGAAGTGCGGTGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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