© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|04803 |
| Gene name | |
| Location | scaffold_05:1626944..1628371 |
| Strand | - |
| Gene length (bp) | 1427 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11991 | Trp_DMAT | Tryptophan dimethylallyltransferase | 6.4E-85 | 17 | 379 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | Yes |
| GO:0009820 | alkaloid metabolic process | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 0.16 | 0.00 | 0.43 |
| Alive | In ants, during behavior modification | 3690.70 | 686.06 | 6695.33 |
| Dead | In ants, recently dead | 2487.81 | 729.98 | 4245.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.005136 | yes |
| Alive | Dead | 0.152697 | no |
| Dead | Fungus | 0.005136 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04803 MTINNEPSTNGKAAPIDIAYWHRNLAPILTSLMISAGSYSPAEQEKQLAILSEHVLPRLGPRLQDAHTTSFLTQS DSPLQAQMNFRDGEPIVRYCWEPLGPLGGSQSDPYAIDAAREAMQHLSTTFGLCTAWSDPLLEAFVPSPDEIRAV QAILPGWLASLGPASTVPSINRLPFSHIGMDMKGSEVGIKCYFNLKIKEIATGLPVTDMAFDALRKLKPALEPAA IDAVQHFLSERPVPYAIELVGLDWVDEREMSDARIKIYVHSRNNSLNTVRDYVTLGGLIQDETKLSGLQQLSKIW HLLLQEPEGIPDDDYDKPFSGDSALYQKLYFSFELRPGKKLPEVKTYLPTWHYVRTDEETVGNYEEIFRLCGQPW GKEGAYRKLFESAFGPVKHDRPKPVHCDASFLFSSETGIYQTLYWSPPLER* |
| Coding | >Ophcf2|04803 ATGACCATCAACAACGAACCATCTACCAACGGCAAGGCAGCCCCCATCGACATAGCCTACTGGCATCGCAACCTC GCCCCCATCTTAACCTCTCTCATGATCTCGGCCGGCTCCTACTCGCCCGCTGAGCAGGAGAAACAGCTCGCCATC CTCTCCGAACACGTCCTCCCCCGTCTCGGACCTCGACTTCAGGATGCCCACACAACCTCGTTTCTCACCCAAAGC GACTCCCCCCTCCAGGCTCAGATGAACTTCCGAGACGGCGAGCCCATCGTCCGCTACTGCTGGGAGCCCCTGGGC CCGCTGGGAGGCAGCCAGAGCGACCCGTACGCCATCGACGCCGCTCGAGAGGCCATGCAGCACCTTTCCACCACC TTTGGGCTCTGCACTGCTTGGAGTGACCCCCTCCTAGAGGCTTTTGTCCCGTCTCCTGACGAGATTCGCGCCGTG CAGGCTATCCTTCCGGGATGGCTGGCCAGTCTCGGGCCGGCTTCTACTGTTCCCTCGATCAACCGGCTTCCCTTT AGTCACATCGGAATGGATATGAAGGGGTCCGAGGTCGGCATCAAGTGCTACTTCAACCTCAAGATCAAGGAGATT GCCACGGGGCTTCCCGTGACGGACATGGCTTTTGACGCGTTGCGGAAACTGAAGCCGGCCCTGGAACCGGCTGCC ATCGATGCTGTTCAACACTTCCTCTCAGAACGGCCAGTCCCATACGCCATCGAACTCGTAGGACTAGACTGGGTA GACGAAAGGGAAATGTCCGACGCCCGAATCAAAATTTACGTCCACAGCCGAAACAACTCTCTCAACACGGTCCGC GACTACGTCACCCTCGGCGGCCTCATTCAGGACGAAACGAAGCTCAGCGGCTTGCAGCAGCTGTCCAAGATCTGG CATCTGCTACTACAAGAGCCCGAGGGCATCCCCGACGACGACTACGACAAGCCGTTCAGCGGCGACTCGGCCCTG TATCAGAAGCTTTACTTTAGTTTCGAGCTGAGGCCGGGGAAGAAGCTGCCCGAGGTGAAGACGTATCTGCCGACG TGGCACTACGTCCGGACCGACGAGGAGACCGTTGGCAACTACGAGGAGATTTTCCGTCTGTGCGGACAGCCATGG GGGAAGGAGGGTGCGTACAGGAAGCTCTTTGAGAGCGCCTTCGGTCCGGTGAAGCATGACCGTCCGAAGCCAGTC CATTGCGATGCGTCGTTTCTGTTTTCCTCCGAGACGGGCATCTATCAGACGCTGTACTGGAGCCCGCCGTTGGAG AGATGA |
| Transcript | >Ophcf2|04803 ATGACCATCAACAACGAACCATCTACCAACGGCAAGGCAGCCCCCATCGACATAGCCTACTGGCATCGCAACCTC GCCCCCATCTTAACCTCTCTCATGATCTCGGCCGGCTCCTACTCGCCCGCTGAGCAGGAGAAACAGCTCGCCATC CTCTCCGAACACGTCCTCCCCCGTCTCGGACCTCGACTTCAGGATGCCCACACAACCTCGTTTCTCACCCAAAGC GACTCCCCCCTCCAGGCTCAGATGAACTTCCGAGACGGCGAGCCCATCGTCCGCTACTGCTGGGAGCCCCTGGGC CCGCTGGGAGGCAGCCAGAGCGACCCGTACGCCATCGACGCCGCTCGAGAGGCCATGCAGCACCTTTCCACCACC TTTGGGCTCTGCACTGCTTGGAGTGACCCCCTCCTAGAGGCTTTTGTCCCGTCTCCTGACGAGATTCGCGCCGTG CAGGCTATCCTTCCGGGATGGCTGGCCAGTCTCGGGCCGGCTTCTACTGTTCCCTCGATCAACCGGCTTCCCTTT AGTCACATCGGAATGGATATGAAGGGGTCCGAGGTCGGCATCAAGTGCTACTTCAACCTCAAGATCAAGGAGATT GCCACGGGGCTTCCCGTGACGGACATGGCTTTTGACGCGTTGCGGAAACTGAAGCCGGCCCTGGAACCGGCTGCC ATCGATGCTGTTCAACACTTCCTCTCAGAACGGCCAGTCCCATACGCCATCGAACTCGTAGGACTAGACTGGGTA GACGAAAGGGAAATGTCCGACGCCCGAATCAAAATTTACGTCCACAGCCGAAACAACTCTCTCAACACGGTCCGC GACTACGTCACCCTCGGCGGCCTCATTCAGGACGAAACGAAGCTCAGCGGCTTGCAGCAGCTGTCCAAGATCTGG CATCTGCTACTACAAGAGCCCGAGGGCATCCCCGACGACGACTACGACAAGCCGTTCAGCGGCGACTCGGCCCTG TATCAGAAGCTTTACTTTAGTTTCGAGCTGAGGCCGGGGAAGAAGCTGCCCGAGGTGAAGACGTATCTGCCGACG TGGCACTACGTCCGGACCGACGAGGAGACCGTTGGCAACTACGAGGAGATTTTCCGTCTGTGCGGACAGCCATGG GGGAAGGAGGGTGCGTACAGGAAGCTCTTTGAGAGCGCCTTCGGTCCGGTGAAGCATGACCGTCCGAAGCCAGTC CATTGCGATGCGTCGTTTCTGTTTTCCTCCGAGACGGGCATCTATCAGACGCTGTACTGGAGCCCGCCGTTGGAG AGATGA |
| Gene | >Ophcf2|04803 ATGACCATCAACAACGAACCATCTACCAACGGCAAGGCAGCCCCCATCGACATAGCCTACTGGCATCGCAACCTC GCCCCCATCTTAACCTCTCTCATGATCTCGGCCGGCTCCTACTCGCCCGCTGAGCAGGAGAAACAGCTCGCCATC CTCTCCGAACACGTCCTCCCCCGTCTCGGACCTCGACTTCAGGATGCCCACACAACCTCGTTTCTCACCCAAAGC GACTCCCCCCTCCAGGCTCAGATGAACTTCCGAGACGGCGAGCCCATCGTCCGCTACTGCTGGGAGCCCCTGGGC CCGCTGGGAGGCAGCCAGAGCGACCCGTACGCCATCGACGCCGCTCGAGAGGCCATGCAGCACCTTTCCACCACC TTTGGGCTCTGCACTGCTTGGAGTGACCCCCTCCTAGAGGCTTTTGTCCCGTCTCCTGACGAGATTCGCGCCGTG CAGGCTATCCTTCCGGGATGGCTGGCCAGTCTCGGGCCGGCTTCTACTGTTCCCTCGATCAACCGGCTTCCCTTT AGTCACATCGGAATGGATATGAAGGGGTCCGAGGTCGGCATCAAGTGCTACTTCAACCTCAAGATCAAGGAGATT GCCACGGGGCTTCCCGTGACGGACATGGCTTTTGACGCGTTGCGGAAACTGAAGCCGGCCCTGGAACCGGCTGCC ATCGATGCTGTTCAACAGTAAGTAGTATCCATTGATAACATCAGGCAGGACCTGAAGAGCGGCTGAGTGACATTA TCACAGCTTCCTCTCAGAACGGCCAGTCCCATACGCCATCGAACTCGTAGGACTAGACTGGGTAGACGAAAGGGA AATGTCCGACGCCCGAATCAAAATTTACGTCCACAGCCGAAACAACTCTCTCAACACGGTCCGCGACTACGTCAC CCTCGGCGGCCTCATTCAGGACGAAACGAAGCTCAGCGGCTTGCAGCAGCTGTCCAAGATCTGGCATCTGCTACT ACAAGAGCCCGAGGGCATCCCCGACGACGACTACGACAAGCCGTTCAGCGGCGACTCGGCCCTGTATCAGAAGCT TTACTTTAGTTTCGAGCTGAGGCCGGGGAAGAAGCTGCCCGAGGTGAAGACGTATCTGCCGACGTGGCACTACGT CCGGACCGACGAGGAGACCGTTGGCAACTACGAGGAGATTTTCCGTCTGTGCGGACAGCCATGGGGGAAGGAGGG TGCGTACAGGAAGCTCTTTGAGAGCGCCTTGTAAGTGTTGGCCTCGCTCATACGTTGGTTTGCTTTACGTTACGT GCCTCGGAGATGACATGCTAACTTGGCCATGTCGTAGCGGTCCGGTGAAGCATGACCGTCCGAAGCCAGTCCATT GCGATGCGTCGTTTCTGTTTTCCTCCGAGACGGGCATCTATCAGACGCTGTACTGGAGCCCGCCGTTGGAGAGAT GA |