Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04785
Gene name
Location	scaffold_05:1582101..1583151
Strand	-
Gene length (bp)	1050
Transcript length (bp)	810
Coding sequence length (bp)	810
Protein length (aa)	270

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03896	TRAP_alpha	Translocon-associated protein (TRAP), alpha subunit	4.9E-07	97	249

GO

GO Term	Description	Terminal node
GO:0005789	endoplasmic reticulum membrane	Yes
GO:0005575	cellular_component	No
GO:0031090	organelle membrane	No
GO:0016020	membrane	No
GO:0110165	cellular anatomical entity	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 24	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	174	196	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	282.48	156.13	408.83
Alive	In ants, during behavior modification	214.42	114.03	314.82
Dead	In ants, recently dead	169.02	95.92	242.12

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.171675	no
Alive	Dead	0.174406	no
Dead	Fungus	0.004680	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04785 MAIDRLFAHKLALLAAWAWGAKADGESPPPPPKPAQLAAEIKTTFPDADILGVHLVNGRPTKALVEVKNREGAPI KVAYLAGALVGTQPLPADAPAYQAIVRNLTAVQYNLEIAAGEAKALPFSFMLDMQPQDVRLQLVAVVADPKGNIV QLPAHNGTASIVEAPTSFFDPQIIFLYLVLSTAFASTLYFVYKTWIEALFPQAKRTKPAKKGRKAADGDAALSTA DSSAVSPGAGKTYDESWIPDHHIKPPVAKRVKSGVGSGKKKGVE*
Coding	>Ophcf2\|04785 ATGGCTATCGATCGTCTCTTCGCCCACAAGCTGGCTCTCTTGGCCGCCTGGGCCTGGGGCGCAAAGGCCGATGGC GAATCTCCTCCTCCGCCTCCCAAGCCAGCCCAGCTGGCAGCCGAAATCAAGACAACCTTCCCGGACGCCGACATT CTGGGCGTGCACCTCGTCAACGGCCGGCCAACCAAGGCGCTCGTCGAGGTTAAGAACAGGGAGGGTGCCCCCATC AAGGTGGCCTACCTAGCTGGCGCTCTGGTCGGCACCCAGCCGCTGCCGGCCGACGCACCGGCCTACCAGGCCATT GTCCGCAACCTGACGGCGGTGCAGTACAATCTTGAGATTGCAGCGGGGGAGGCCAAGGCTTTACCGTTTTCATTC ATGCTGGATATGCAGCCTCAGGATGTTCGACTTCAGCTAGTGGCCGTTGTTGCTGATCCGAAGGGGAATATTGTT CAGTTGCCGGCTCATAACGGGACGGCTTCGATAGTTGAGGCTCCTACGAGCTTCTTTGATCCTCAGATCATCTTC CTGTACCTCGTTCTGTCAACCGCCTTTGCCAGCACGCTCTACTTTGTCTACAAAACCTGGATCGAAGCCCTGTTC CCTCAGGCTAAGCGCACCAAGCCAGCCAAGAAGGGCAGGAAGGCAGCCGATGGCGACGCCGCGCTCTCGACCGCA GACTCATCCGCTGTCTCGCCCGGCGCCGGAAAGACGTACGACGAGAGCTGGATTCCCGATCATCATATCAAGCCT CCTGTCGCCAAGCGCGTCAAGTCTGGCGTCGGCAGTGGCAAGAAGAAGGGTGTTGAATAG
Transcript	>Ophcf2\|04785 ATGGCTATCGATCGTCTCTTCGCCCACAAGCTGGCTCTCTTGGCCGCCTGGGCCTGGGGCGCAAAGGCCGATGGC GAATCTCCTCCTCCGCCTCCCAAGCCAGCCCAGCTGGCAGCCGAAATCAAGACAACCTTCCCGGACGCCGACATT CTGGGCGTGCACCTCGTCAACGGCCGGCCAACCAAGGCGCTCGTCGAGGTTAAGAACAGGGAGGGTGCCCCCATC AAGGTGGCCTACCTAGCTGGCGCTCTGGTCGGCACCCAGCCGCTGCCGGCCGACGCACCGGCCTACCAGGCCATT GTCCGCAACCTGACGGCGGTGCAGTACAATCTTGAGATTGCAGCGGGGGAGGCCAAGGCTTTACCGTTTTCATTC ATGCTGGATATGCAGCCTCAGGATGTTCGACTTCAGCTAGTGGCCGTTGTTGCTGATCCGAAGGGGAATATTGTT CAGTTGCCGGCTCATAACGGGACGGCTTCGATAGTTGAGGCTCCTACGAGCTTCTTTGATCCTCAGATCATCTTC CTGTACCTCGTTCTGTCAACCGCCTTTGCCAGCACGCTCTACTTTGTCTACAAAACCTGGATCGAAGCCCTGTTC CCTCAGGCTAAGCGCACCAAGCCAGCCAAGAAGGGCAGGAAGGCAGCCGATGGCGACGCCGCGCTCTCGACCGCA GACTCATCCGCTGTCTCGCCCGGCGCCGGAAAGACGTACGACGAGAGCTGGATTCCCGATCATCATATCAAGCCT CCTGTCGCCAAGCGCGTCAAGTCTGGCGTCGGCAGTGGCAAGAAGAAGGGTGTTGAATAG
Gene	>Ophcf2\|04785 ATGGCTATCGATCGTCTCTTCGCCCACAAGCTGGCTCTCTTGGCCGCCTGGGCCTGGGGCGCAAAGGTGAGGAGG AGCTTGAGATTGGGTTTCGCGGCTTGGCGGCTTTTTCTTTTCCCTTGTTGATTGAGTTCATGGCTTTGGCATCTT CCCGTTGCACTTCTCATCCGTCTCGATTCGTCCGAGAGAGGAAAACGGAAAAGATTGAAAAGGCTGACCGATGGA AAATGTCGTCGAAATAGGCCGATGGCGAATCTCCTCCTCCGCCTCCCAAGCCAGCCCAGCTGGCAGCCGAAATCA AGACAACCTTCCCGGACGCCGACATTCTGGGCGTGCACCTCGTCAACGGCCGGCCAACCAAGGCGCTCGTCGAGG TTAAGAACAGGGAGGGTGCCCCCATCAAGGTGGCCTACCTAGCTGGCGCTCTGGTCGGCACCCAGCCGCTGCCGG CCGACGCACCGGCCTACCAGGCCATTGTCCGCAACCTGACGGCGGTGCAGTACAATCTTGAGATTGCAGCGGGGG AGGCCAAGGCTTTACCGTTTTCATTCATGCTGGATATGCAGCCTCAGGATGTTCGACTTCAGCTAGTGGCCGTTG TTGCTGATCCGAAGGGGAATATTGTTCAGTTGCCGGCTCATAACGGGACGGCTTCGATAGTTGAGGCTCCTACGA GCTTCTTTGATCCTCAGATGTGCGTTTCTGTTTTCAACCCTTTACTTTGTCTTGTCATGATGAATATGCTGATAT TCGCTTAGCATCTTCCTGTACCTCGTTCTGTCAACCGCCTTTGCCAGCACGCTCTACTTTGTCTACAAAACCTGG ATCGAAGCCCTGTTCCCTCAGGCTAAGCGCACCAAGCCAGCCAAGAAGGGCAGGAAGGCAGCCGATGGCGACGCC GCGCTCTCGACCGCAGACTCATCCGCTGTCTCGCCCGGCGCCGGAAAGACGTACGACGAGAGCTGGATTCCCGAT CATCATATCAAGCCTCCTGTCGCCAAGCGCGTCAAGTCTGGCGTCGGCAGTGGCAAGAAGAAGGGTGTTGAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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