© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04776 |
| Gene name | |
| Location | scaffold_05:1565068..1565740 |
| Strand | + |
| Gene length (bp) | 672 |
| Transcript length (bp) | 510 |
| Coding sequence length (bp) | 510 |
| Protein length (aa) | 170 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03134 | TB2_DP1_HVA22 | TB2/DP1, HVA22 family | 4.3E-27 | 69 | 143 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1159 | 0.098 | 0.0774 | 0.3653 | 0.2304 | 0.0563 | 0.8283 | 0.2874 | 0.4154 | 0.0905 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 46 | 68 | 22 |
| 2 | 88 | 110 | 22 |
| 3 | 115 | 137 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3213 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04776 MSSPQEKAQNLIGRLDRELSKYPTLNNLEKQAGVPKAYVVVGLGALYFFLIIFNLGGKLLTNLAGFVIPGYYSLN ALFTAGKDDDTQWLTYWVVFAFFTVLESFINIVYWFPFYFVFKFIFLLWLSLPMFRGADIIFTSFLSPTLGRYFQ SGTTSSGLRSKTGGLDKAE* |
| Coding | >Ophcf2|04776 ATGTCATCTCCTCAGGAAAAGGCCCAAAACCTCATCGGCCGCCTCGACCGCGAGCTGTCCAAATACCCGACCCTG AACAACTTGGAGAAGCAGGCCGGCGTGCCCAAAGCCTACGTCGTCGTCGGCCTCGGTGCCCTCTACTTCTTCCTC ATCATCTTCAATCTCGGCGGGAAGCTTCTCACCAACCTTGCCGGCTTCGTCATCCCCGGCTACTACTCGCTCAAT GCCCTCTTCACTGCTGGCAAGGATGACGATACCCAGTGGCTGACGTACTGGGTCGTCTTCGCCTTCTTTACTGTT CTCGAGAGCTTCATCAACATTGTCTACTGGTTCCCTTTCTACTTCGTCTTCAAGTTCATCTTTCTCCTCTGGTTG TCGCTGCCCATGTTCCGTGGCGCCGACATCATTTTTACCTCATTCTTGTCCCCGACTCTCGGCCGATACTTCCAG TCCGGCACCACCTCTTCCGGTCTGCGTTCCAAGACCGGCGGCCTTGACAAGGCCGAATAG |
| Transcript | >Ophcf2|04776 ATGTCATCTCCTCAGGAAAAGGCCCAAAACCTCATCGGCCGCCTCGACCGCGAGCTGTCCAAATACCCGACCCTG AACAACTTGGAGAAGCAGGCCGGCGTGCCCAAAGCCTACGTCGTCGTCGGCCTCGGTGCCCTCTACTTCTTCCTC ATCATCTTCAATCTCGGCGGGAAGCTTCTCACCAACCTTGCCGGCTTCGTCATCCCCGGCTACTACTCGCTCAAT GCCCTCTTCACTGCTGGCAAGGATGACGATACCCAGTGGCTGACGTACTGGGTCGTCTTCGCCTTCTTTACTGTT CTCGAGAGCTTCATCAACATTGTCTACTGGTTCCCTTTCTACTTCGTCTTCAAGTTCATCTTTCTCCTCTGGTTG TCGCTGCCCATGTTCCGTGGCGCCGACATCATTTTTACCTCATTCTTGTCCCCGACTCTCGGCCGATACTTCCAG TCCGGCACCACCTCTTCCGGTCTGCGTTCCAAGACCGGCGGCCTTGACAAGGCCGAATAG |
| Gene | >Ophcf2|04776 ATGTCATCTCCTCAGGAAAAGGCCCAAAACCTCATCGGCCGCCTCGACCGCGAGGTTCGTGGGAAGTCCTCATCA CTGGGGTCGGCGCTAACGCATACATCTAGCTGTCCAAATACCCGACCCTGAACAACTTGGAGAAGCAGGCCGGCG TGCCCAAAGCCTACGTCGTCGTCGGCCTCGGTGCCCTCTACTTCTTCCTCATCATCTTCAATCTCGGCGGGAAGC TTCTCACCAACCTTGCCGGCTTCGTCATCCCCGGCTACTACTCGCTCAATGCCCTCTTCACTGCTGGCAAGGATG ACGATACCCAGTGGCTGACGGTGAGCTTCTCTCCCGCTTCGCTTGCCAAGACTTGACTGATGGGTCCGCAGTACT GGGTCGTCTTCGCCTTCTTTACTGTTCTCGAGAGCTTCATCAACATTGTCTACTGGTTCCCTTTCTACTTCGTCT TCAAGTTCATCTTTCTCCTCTGGTTGTCGCTGCCCATGTTCCGGTACGTGTCAAGGCGCAAGACCAGCTCAAGTT GTCGTCGAGTTGCTCACCAGTCTGCACAGTGGCGCCGACATCATTTTTACCTCATTCTTGTCCCCGACTCTCGGC CGATACTTCCAGTCCGGCACCACCTCTTCCGGTCTGCGTTCCAAGACCGGCGGCCTTGACAAGGCCGAATAG |