Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04776
Gene name
Locationscaffold_05:1565068..1565740
Strand+
Gene length (bp)672
Transcript length (bp)510
Coding sequence length (bp)510
Protein length (aa) 170

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03134 TB2_DP1_HVA22 TB2/DP1, HVA22 family 4.3E-27 69 143

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 69 0.5

Transmembrane Domains

Domain # Start End Length
1 46 68 22
2 88 110 22
3 115 137 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04776
MSSPQEKAQNLIGRLDRELSKYPTLNNLEKQAGVPKAYVVVGLGALYFFLIIFNLGGKLLTNLAGFVIPGYYSLN
ALFTAGKDDDTQWLTYWVVFAFFTVLESFINIVYWFPFYFVFKFIFLLWLSLPMFRGADIIFTSFLSPTLGRYFQ
SGTTSSGLRSKTGGLDKAE*
Coding >Ophcf2|04776
ATGTCATCTCCTCAGGAAAAGGCCCAAAACCTCATCGGCCGCCTCGACCGCGAGCTGTCCAAATACCCGACCCTG
AACAACTTGGAGAAGCAGGCCGGCGTGCCCAAAGCCTACGTCGTCGTCGGCCTCGGTGCCCTCTACTTCTTCCTC
ATCATCTTCAATCTCGGCGGGAAGCTTCTCACCAACCTTGCCGGCTTCGTCATCCCCGGCTACTACTCGCTCAAT
GCCCTCTTCACTGCTGGCAAGGATGACGATACCCAGTGGCTGACGTACTGGGTCGTCTTCGCCTTCTTTACTGTT
CTCGAGAGCTTCATCAACATTGTCTACTGGTTCCCTTTCTACTTCGTCTTCAAGTTCATCTTTCTCCTCTGGTTG
TCGCTGCCCATGTTCCGTGGCGCCGACATCATTTTTACCTCATTCTTGTCCCCGACTCTCGGCCGATACTTCCAG
TCCGGCACCACCTCTTCCGGTCTGCGTTCCAAGACCGGCGGCCTTGACAAGGCCGAATAG
Transcript >Ophcf2|04776
ATGTCATCTCCTCAGGAAAAGGCCCAAAACCTCATCGGCCGCCTCGACCGCGAGCTGTCCAAATACCCGACCCTG
AACAACTTGGAGAAGCAGGCCGGCGTGCCCAAAGCCTACGTCGTCGTCGGCCTCGGTGCCCTCTACTTCTTCCTC
ATCATCTTCAATCTCGGCGGGAAGCTTCTCACCAACCTTGCCGGCTTCGTCATCCCCGGCTACTACTCGCTCAAT
GCCCTCTTCACTGCTGGCAAGGATGACGATACCCAGTGGCTGACGTACTGGGTCGTCTTCGCCTTCTTTACTGTT
CTCGAGAGCTTCATCAACATTGTCTACTGGTTCCCTTTCTACTTCGTCTTCAAGTTCATCTTTCTCCTCTGGTTG
TCGCTGCCCATGTTCCGTGGCGCCGACATCATTTTTACCTCATTCTTGTCCCCGACTCTCGGCCGATACTTCCAG
TCCGGCACCACCTCTTCCGGTCTGCGTTCCAAGACCGGCGGCCTTGACAAGGCCGAATAG
Gene >Ophcf2|04776
ATGTCATCTCCTCAGGAAAAGGCCCAAAACCTCATCGGCCGCCTCGACCGCGAGGTTCGTGGGAAGTCCTCATCA
CTGGGGTCGGCGCTAACGCATACATCTAGCTGTCCAAATACCCGACCCTGAACAACTTGGAGAAGCAGGCCGGCG
TGCCCAAAGCCTACGTCGTCGTCGGCCTCGGTGCCCTCTACTTCTTCCTCATCATCTTCAATCTCGGCGGGAAGC
TTCTCACCAACCTTGCCGGCTTCGTCATCCCCGGCTACTACTCGCTCAATGCCCTCTTCACTGCTGGCAAGGATG
ACGATACCCAGTGGCTGACGGTGAGCTTCTCTCCCGCTTCGCTTGCCAAGACTTGACTGATGGGTCCGCAGTACT
GGGTCGTCTTCGCCTTCTTTACTGTTCTCGAGAGCTTCATCAACATTGTCTACTGGTTCCCTTTCTACTTCGTCT
TCAAGTTCATCTTTCTCCTCTGGTTGTCGCTGCCCATGTTCCGGTACGTGTCAAGGCGCAAGACCAGCTCAAGTT
GTCGTCGAGTTGCTCACCAGTCTGCACAGTGGCGCCGACATCATTTTTACCTCATTCTTGTCCCCGACTCTCGGC
CGATACTTCCAGTCCGGCACCACCTCTTCCGGTCTGCGTTCCAAGACCGGCGGCCTTGACAAGGCCGAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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