© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04763 |
| Gene name | |
| Location | scaffold_05:1527291..1528277 |
| Strand | + |
| Gene length (bp) | 986 |
| Transcript length (bp) | 759 |
| Coding sequence length (bp) | 759 |
| Protein length (aa) | 253 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1.1E-46 | 46 | 194 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000413 | protein peptidyl-prolyl isomerization | Yes |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Yes |
| GO:0019538 | protein metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016859 | cis-trans isomerase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0018193 | peptidyl-amino acid modification | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0018208 | peptidyl-proline modification | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008150 | biological_process | No |
| GO:0016853 | isomerase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 220 | 242 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 491.67 | 256.14 | 727.20 |
| Alive | In ants, during behavior modification | 621.47 | 292.41 | 950.52 |
| Dead | In ants, recently dead | 372.63 | 199.21 | 546.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.307116 | no |
| Alive | Dead | 0.004828 | yes |
| Dead | Fungus | 0.190441 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04763 MLNLRKLLTSAVLVSGVGLLLLAQSAEAGKGPKITHKVTFHMKHGDEDIGSIVMGLYGNTVPKTVDNFFELAQKK SGAGYLDSTFHRVIEKFMIQGGDFTKGDGTGGKSIYGEKFADENFKLKHSKPGILSMANSGKDTNGSQFFITTVI TSWLDGRHVVFGEVIDGFDVVTQIEHVPVDGSSKPIKPVRVAKVDTERLLEEADAREDEPTTLPQDENYTGWSSV QKLIVFGVAVGAVVIYLRSRKQYSRMD* |
| Coding | >Ophcf2|04763 ATGTTGAATCTGAGAAAGTTGCTAACCTCAGCCGTCCTCGTATCCGGGGTCGGTCTGCTGCTCTTGGCCCAAAGC GCCGAGGCTGGCAAAGGTCCCAAGATCACCCACAAGGTGACTTTTCATATGAAGCATGGCGACGAGGACATTGGA TCCATCGTCATGGGTCTTTACGGGAATACGGTGCCCAAGACGGTGGATAATTTCTTTGAACTTGCACAGAAGAAG TCGGGTGCAGGCTATCTCGACTCGACATTCCATCGCGTCATCGAAAAGTTCATGATTCAGGGTGGCGATTTCACC AAAGGCGATGGCACGGGTGGCAAATCCATCTATGGCGAAAAGTTCGCCGACGAAAACTTCAAGCTGAAGCACAGC AAGCCGGGCATCCTGTCCATGGCCAACTCTGGAAAGGACACCAACGGCTCGCAATTCTTCATCACTACCGTCATC ACTTCGTGGCTCGACGGACGTCATGTCGTCTTCGGCGAAGTCATCGACGGCTTCGACGTCGTCACGCAGATCGAG CATGTCCCCGTCGATGGCAGCAGCAAGCCGATAAAACCCGTCCGCGTCGCCAAGGTCGACACCGAACGTCTTCTC GAAGAAGCCGACGCCCGAGAGGACGAACCGACGACACTTCCGCAGGACGAGAACTATACAGGCTGGTCGTCTGTG CAAAAGCTCATCGTGTTTGGTGTTGCTGTTGGCGCTGTGGTCATATATCTGCGGAGCAGGAAACAGTACTCGAGG ATGGATTAG |
| Transcript | >Ophcf2|04763 ATGTTGAATCTGAGAAAGTTGCTAACCTCAGCCGTCCTCGTATCCGGGGTCGGTCTGCTGCTCTTGGCCCAAAGC GCCGAGGCTGGCAAAGGTCCCAAGATCACCCACAAGGTGACTTTTCATATGAAGCATGGCGACGAGGACATTGGA TCCATCGTCATGGGTCTTTACGGGAATACGGTGCCCAAGACGGTGGATAATTTCTTTGAACTTGCACAGAAGAAG TCGGGTGCAGGCTATCTCGACTCGACATTCCATCGCGTCATCGAAAAGTTCATGATTCAGGGTGGCGATTTCACC AAAGGCGATGGCACGGGTGGCAAATCCATCTATGGCGAAAAGTTCGCCGACGAAAACTTCAAGCTGAAGCACAGC AAGCCGGGCATCCTGTCCATGGCCAACTCTGGAAAGGACACCAACGGCTCGCAATTCTTCATCACTACCGTCATC ACTTCGTGGCTCGACGGACGTCATGTCGTCTTCGGCGAAGTCATCGACGGCTTCGACGTCGTCACGCAGATCGAG CATGTCCCCGTCGATGGCAGCAGCAAGCCGATAAAACCCGTCCGCGTCGCCAAGGTCGACACCGAACGTCTTCTC GAAGAAGCCGACGCCCGAGAGGACGAACCGACGACACTTCCGCAGGACGAGAACTATACAGGCTGGTCGTCTGTG CAAAAGCTCATCGTGTTTGGTGTTGCTGTTGGCGCTGTGGTCATATATCTGCGGAGCAGGAAACAGTACTCGAGG ATGGATTAG |
| Gene | >Ophcf2|04763 ATGTTGAATCTGAGAAAGTTGCTAACCTCAGCCGTCCTCGTATCCGGGGTCGGTCTGCTGCTCTTGGCCCAAAGC GCCGAGGCTGGCAAAGGTCCCAAGATCACCCACAAGGTGACTTTTCATATGAAGCATGGCGACGAGGACATTGGA TCCATCGTCATGGGTCTTTACGGGAATACGGTGCCCAAGACGGTGGATAATTTCTTTGAACTTGCACAGAAGAAG TCGGGTGCAGGCTATCTCGACTCGACATTCCATCGCGTCATCGAAAAGTTCATGATTCAGGGTGGCGATTTCACC AAAGGCGATGGCACGGGTGGCAAATCCAGTATGTGGTGCAGAACCCATTTCATGAGCTTTCGGTTCTTTGAGCTG ACGCGCTGACCTTTCTAGTCTATGGCGAAAAGTTCGCCGACGAAAACTTCAAGCTGAAGCACAGCAAGCCGGGCA TCCTGTCCATGGCCAACTCTGGAAAGGACACCAACGGCTCGCAATTCTTCATCACTACCGTCATCACTTCGTACG CTCCGTCATACTTCGCGCCTTCGCGATGTCATTGGCTAATGAACGAAACTCTACAGGTGGCTCGACGGACGTCAT GTCGTCTTCGGCGAAGTCATCGACGGCTTCGACGTCGTCACGCAGATCGAGCATGTCCCCGTCGATGGCAGCAGC AAGCCGATAAAACCCGTCCGCGTCGCCAAGGTCGACACCGAACGTCTTCTCGAAGGTACACACAAAGAACTTTAG AGACATCGCGCGCTACCGGGCAAATCATTCTTATCGCTATGGCCGATATGCTGATTGGCGTGGCACCGCCCTTTC TTACAGAAGCCGACGCCCGAGAGGACGAACCGACGACACTTCCGCAGGACGAGAACTATACAGGCTGGTCGTCTG TGCAAAAGCTCATCGTGTTTGGTGTTGCTGTTGGCGCTGTGGTCATATATCTGCGGAGCAGGAAACAGTACTCGA GGATGGATTAG |