© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04759 |
| Gene name | |
| Location | scaffold_05:1519439..1520426 |
| Strand | + |
| Gene length (bp) | 987 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20520 | Ac45-VOA1_TM | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | 1.1E-17 | 222 | 261 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 227 | 249 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 241.97 | 134.99 | 348.94 |
| Alive | In ants, during behavior modification | 294.37 | 161.50 | 427.24 |
| Dead | In ants, recently dead | 315.88 | 171.33 | 460.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.348521 | no |
| Alive | Dead | 0.731073 | no |
| Dead | Fungus | 0.184920 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04759 MRLRTVVEILAFSLSAAALSDSFPLLLLSTAKFHDVPNRNQFQTSDEALKYVRGVLATCPTNRYLIATQPGIHAS DFRQANGCAMPRLCRAAAKPQIKSEFSVAEVFGDTEYAGFSQHIESECAKKGKAVIVDEVHLPPLSSRDRASDLL KHDMILSDSFEAVTKNDDYTILFLPRPGEPAYQAEFIDPLHQDLKRDFEPELVRRDDNDTAWQRLPLFEKYQFFT PGIFTGIIVALVLFSILGVGLSALSSLEVSYGAFEKDMGPAAQKKQQ* |
| Coding | >Ophcf2|04759 ATGCGTCTTCGTACAGTTGTCGAAATTCTAGCGTTTTCGCTTTCGGCAGCGGCGCTGTCGGATTCATTTCCGCTT CTGCTCCTTTCCACGGCAAAGTTTCACGATGTTCCCAACCGCAACCAGTTTCAGACGAGCGACGAGGCGTTGAAA TACGTCAGAGGGGTGCTGGCGACGTGCCCTACGAACCGTTATCTTATTGCCACGCAGCCGGGAATCCATGCCTCC GACTTTCGTCAGGCCAACGGGTGCGCCATGCCCCGTCTTTGCCGAGCGGCCGCGAAGCCGCAGATCAAGAGCGAA TTTTCTGTCGCTGAAGTGTTTGGGGATACGGAATACGCTGGGTTCTCTCAGCATATTGAGTCGGAGTGCGCCAAG AAGGGCAAGGCCGTCATCGTCGACGAGGTTCATTTGCCGCCCTTGAGCAGCAGAGACAGGGCCAGCGACTTGCTC AAGCATGACATGATCCTTTCCGACAGCTTCGAGGCCGTCACCAAGAACGACGACTACACCATTCTTTTCCTACCG AGACCGGGCGAGCCCGCGTATCAAGCCGAATTTATCGATCCGCTACACCAAGATCTGAAGAGAGATTTCGAGCCG GAGCTGGTGCGTCGCGACGATAACGACACCGCATGGCAGCGCCTCCCGCTATTTGAAAAGTACCAATTCTTCACC CCTGGCATTTTCACGGGGATTATTGTAGCCCTGGTACTCTTTTCGATTCTCGGTGTCGGACTCAGCGCGTTGTCG AGCTTGGAGGTATCGTATGGCGCTTTTGAGAAGGACATGGGCCCTGCTGCTCAGAAGAAGCAGCAGTGA |
| Transcript | >Ophcf2|04759 ATGCGTCTTCGTACAGTTGTCGAAATTCTAGCGTTTTCGCTTTCGGCAGCGGCGCTGTCGGATTCATTTCCGCTT CTGCTCCTTTCCACGGCAAAGTTTCACGATGTTCCCAACCGCAACCAGTTTCAGACGAGCGACGAGGCGTTGAAA TACGTCAGAGGGGTGCTGGCGACGTGCCCTACGAACCGTTATCTTATTGCCACGCAGCCGGGAATCCATGCCTCC GACTTTCGTCAGGCCAACGGGTGCGCCATGCCCCGTCTTTGCCGAGCGGCCGCGAAGCCGCAGATCAAGAGCGAA TTTTCTGTCGCTGAAGTGTTTGGGGATACGGAATACGCTGGGTTCTCTCAGCATATTGAGTCGGAGTGCGCCAAG AAGGGCAAGGCCGTCATCGTCGACGAGGTTCATTTGCCGCCCTTGAGCAGCAGAGACAGGGCCAGCGACTTGCTC AAGCATGACATGATCCTTTCCGACAGCTTCGAGGCCGTCACCAAGAACGACGACTACACCATTCTTTTCCTACCG AGACCGGGCGAGCCCGCGTATCAAGCCGAATTTATCGATCCGCTACACCAAGATCTGAAGAGAGATTTCGAGCCG GAGCTGGTGCGTCGCGACGATAACGACACCGCATGGCAGCGCCTCCCGCTATTTGAAAAGTACCAATTCTTCACC CCTGGCATTTTCACGGGGATTATTGTAGCCCTGGTACTCTTTTCGATTCTCGGTGTCGGACTCAGCGCGTTGTCG AGCTTGGAGGTATCGTATGGCGCTTTTGAGAAGGACATGGGCCCTGCTGCTCAGAAGAAGCAGCAGTGA |
| Gene | >Ophcf2|04759 ATGCGTCTTCGTACAGTTGTCGAAATTCTAGCGTTTTCGCTTTCGGCAGCGGCGCTGTCGGATTCATTTCCGCTT CTGCTCCTTTCCACGGCAAAGTAGGCATTCCGGGCCCGACGGCCAGCTCGCCTCCTGACTTCCTCGCAACTAACC TTGACCAGGTTTCACGATGTTCCCAACCGCAACCAGTTTCAGACGAGCGACGAGGCGTTGAAATACGTCAGAGGG GTGCTGGCGACGTGCCCTACGAACCGTTATCTTATTGCCACGCAGCCGGGAATCCATGCCTCCGACTTTCGTCAG GCCAACGGGTGCGCCATGCCCCGTCTTTGCCGAGCGGCCGCGAAGCCGCAGATCAAGAGCGAATTTTCTGTCGCT GAAGTGTTTGGGGATACGGAATACGCTGGGTTCTCTCAGCATATTGAGTCGGAGTGCGCCAAGAAGGGCAAGGCC GTCATCGTCGACGAGGTTCATTTGCCGCCCTTGAGCAGCAGAGACAGGGCCAGCGACTTGCTCAAGCATGGTGAA TTTACCCACACAATCCGTTGGGTATCCAGTGGGCTTACTCCGTGATAATAGACATGATCCTTTCCGACAGCTTCG AGGCCGTCACCAAGAACGACGACTACACCATTCTTTTCCTACCGAGACCGGGCGAGCCCGCGTATCAAGCCGAAT TTATCGATCCGCTACACCAAGATCTGAAGAGAGATTTCGAGCCGGAGCTGGTGCGTCGCGACGATAACGACACCG CATGGCAGCGCCTCCCGCTATTTGAAAAGTACCAATTCTTCACCCCTGGTATTACCTCTTCCTCGCCCTCTTTAC CCCTCGACCTAACCTCCTCCAGGCATTTTCACGGGGATTATTGTAGCCCTGGTACTCTTTTCGATTCTCGGTGTC GGACTCAGCGCGTTGTCGAGCTTGGAGGTATCGTATGGCGCTTTTGAGAAGGACATGGGCCCTGCTGCTCAGAAG AAGCAGCAGTGA |