© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04747 |
| Gene name | |
| Location | scaffold_05:1488201..1489476 |
| Strand | + |
| Gene length (bp) | 1275 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 4.8E-11 | 104 | 304 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0006811 | ion transport | No |
| GO:0006810 | transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 106 | 17 |
| 2 | 116 | 138 | 22 |
| 3 | 159 | 181 | 22 |
| 4 | 201 | 223 | 22 |
| 5 | 243 | 265 | 22 |
| 6 | 275 | 297 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 134.36 | 76.27 | 192.45 |
| Alive | In ants, during behavior modification | 150.82 | 83.34 | 218.30 |
| Dead | In ants, recently dead | 147.76 | 82.65 | 212.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.595794 | no |
| Alive | Dead | 0.923702 | no |
| Dead | Fungus | 0.671830 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04747 MSSDGDTEETASPGPHTNPFNFKTQVITASPIKTNMGQRRGHRYKHSSISTQHQVFQEPPQRPPPVLPVSLPIPT VAEAWTSMHKEQRARLYWSLCHLAIAVYIFFRSHASLAAMALSHLVFFDAGSAAVCAAVDILGNFEVWRRSSIRH PFGLERAEVLVGFALSIFLLFGGFDLVSHNLKHFLESLGHHMGRHEHVHDHVAPGSIDLVAALAIGSTLISAYGL KNHARIAKVMRVSYLAALPSVLSNPFHFLTLFFSSLIALLPLLSISLYAWLDRLICAVISLAMFGLGFRVAIAQG LMLLMSYGGSNGHSGVSSVLREIESESAIARLEEAQFWQVNYGLCMANVRVSVGKDCDETTLSRLRHRISSLIQN RLGEGYGMGGNIRWEVTLQMNADAGL* |
| Coding | >Ophcf2|04747 ATGTCTAGCGACGGTGACACCGAGGAGACTGCGTCGCCCGGACCTCATACAAATCCGTTCAACTTCAAGACGCAA GTCATCACGGCGTCGCCAATCAAAACCAACATGGGCCAGCGCCGAGGCCACAGATATAAGCACAGCAGCATCTCA ACTCAGCATCAAGTCTTTCAAGAGCCGCCACAGAGGCCGCCTCCTGTTCTTCCCGTCTCCCTTCCTATTCCCACG GTTGCCGAAGCATGGACGAGCATGCACAAGGAACAGCGGGCCCGGCTATACTGGAGCCTCTGTCACCTCGCCATC GCCGTGTACATCTTCTTCCGATCCCACGCATCCCTCGCGGCCATGGCCCTGTCGCATCTCGTCTTCTTCGATGCC GGCAGCGCCGCCGTCTGCGCCGCCGTTGACATTCTCGGAAACTTCGAGGTCTGGAGGCGGAGCAGCATCCGACAT CCCTTTGGTCTTGAGAGAGCAGAAGTACTGGTCGGTTTCGCTCTGTCTATATTCCTTTTGTTCGGGGGATTTGAC TTGGTGTCGCACAACCTGAAGCATTTCCTCGAATCCCTCGGTCATCACATGGGTCGCCACGAGCATGTCCATGAT CACGTCGCACCCGGCTCCATCGACCTGGTTGCGGCCCTTGCTATTGGAAGCACGCTCATCTCTGCATATGGCCTC AAGAACCACGCGCGCATTGCCAAAGTCATGAGGGTGTCATACTTGGCAGCCTTGCCCAGTGTGTTGTCCAATCCT TTCCACTTCCTCACGCTATTCTTCTCGTCTCTAATCGCACTGTTGCCGTTATTGTCCATTTCCCTCTATGCGTGG TTGGACAGGCTGATATGCGCCGTCATCTCCTTGGCCATGTTTGGCCTTGGCTTCCGCGTGGCTATAGCTCAAGGC CTAATGCTTCTCATGTCGTACGGGGGCAGCAACGGACACTCTGGTGTGTCGTCGGTCTTGCGCGAGATCGAATCA GAATCCGCCATTGCTCGCCTCGAAGAGGCACAGTTTTGGCAGGTCAACTACGGGCTATGTATGGCCAACGTGAGA GTCAGCGTTGGCAAGGATTGCGACGAGACGACGCTCAGCAGATTGCGACATCGAATCTCCTCCCTTATCCAGAAT CGCCTTGGTGAAGGCTACGGGATGGGAGGCAATATACGTTGGGAGGTGACGTTACAGATGAATGCCGACGCGGGA CTCTGA |
| Transcript | >Ophcf2|04747 ATGTCTAGCGACGGTGACACCGAGGAGACTGCGTCGCCCGGACCTCATACAAATCCGTTCAACTTCAAGACGCAA GTCATCACGGCGTCGCCAATCAAAACCAACATGGGCCAGCGCCGAGGCCACAGATATAAGCACAGCAGCATCTCA ACTCAGCATCAAGTCTTTCAAGAGCCGCCACAGAGGCCGCCTCCTGTTCTTCCCGTCTCCCTTCCTATTCCCACG GTTGCCGAAGCATGGACGAGCATGCACAAGGAACAGCGGGCCCGGCTATACTGGAGCCTCTGTCACCTCGCCATC GCCGTGTACATCTTCTTCCGATCCCACGCATCCCTCGCGGCCATGGCCCTGTCGCATCTCGTCTTCTTCGATGCC GGCAGCGCCGCCGTCTGCGCCGCCGTTGACATTCTCGGAAACTTCGAGGTCTGGAGGCGGAGCAGCATCCGACAT CCCTTTGGTCTTGAGAGAGCAGAAGTACTGGTCGGTTTCGCTCTGTCTATATTCCTTTTGTTCGGGGGATTTGAC TTGGTGTCGCACAACCTGAAGCATTTCCTCGAATCCCTCGGTCATCACATGGGTCGCCACGAGCATGTCCATGAT CACGTCGCACCCGGCTCCATCGACCTGGTTGCGGCCCTTGCTATTGGAAGCACGCTCATCTCTGCATATGGCCTC AAGAACCACGCGCGCATTGCCAAAGTCATGAGGGTGTCATACTTGGCAGCCTTGCCCAGTGTGTTGTCCAATCCT TTCCACTTCCTCACGCTATTCTTCTCGTCTCTAATCGCACTGTTGCCGTTATTGTCCATTTCCCTCTATGCGTGG TTGGACAGGCTGATATGCGCCGTCATCTCCTTGGCCATGTTTGGCCTTGGCTTCCGCGTGGCTATAGCTCAAGGC CTAATGCTTCTCATGTCGTACGGGGGCAGCAACGGACACTCTGGTGTGTCGTCGGTCTTGCGCGAGATCGAATCA GAATCCGCCATTGCTCGCCTCGAAGAGGCACAGTTTTGGCAGGTCAACTACGGGCTATGTATGGCCAACGTGAGA GTCAGCGTTGGCAAGGATTGCGACGAGACGACGCTCAGCAGATTGCGACATCGAATCTCCTCCCTTATCCAGAAT CGCCTTGGTGAAGGCTACGGGATGGGAGGCAATATACGTTGGGAGGTGACGTTACAGATGAATGCCGACGCGGGA CTCTGA |
| Gene | >Ophcf2|04747 ATGTCTAGCGACGGTGACACCGAGGAGACTGCGTCGCCCGGACCTCATACAAATCCGTTCAACTTCAAGACGCAA GTCATCACGGCGTCGCCAATCAAAACCGTGTGTTCGCCAACACGCCTTTCCCTGACTAATAACTGATGCTGGAAG CTGACCTTCAACGTTGTGCAGAACATGGGCCAGCGCCGAGGCCACAGATATAAGCACAGCAGCATCTCAACTCAG CATCAAGTCTTTCAAGAGCCGCCACAGAGGCCGCCTCCTGTTCTTCCCGTCTCCCTTCCTATTCCCACGGTTGCC GAAGCATGGACGAGCATGCACAAGGAACAGCGGGCCCGGCTATACTGGAGCCTCTGTCACCTCGCCATCGCCGTG TACATCTTCTTCCGATCCCACGCATCCCTCGCGGCCATGGCCCTGTCGCATCTCGTCTTCTTCGATGCCGGCAGC GCCGCCGTCTGCGCCGCCGTTGACATTCTCGGAAACTTCGAGGTCTGGAGGCGGAGCAGCATCCGACATCCCTTT GGTCTTGAGAGAGCAGAAGTACTGGTCGGTTTCGCTCTGTCTATATTCCTTTTGTTCGGGGGATTTGACTTGGTG TCGCACAACCTGAAGCATTTCCTCGAATCCCTCGGTCATCACATGGGTCGCCACGAGCATGTCCATGATCACGTC GCACCCGGCTCCATCGACCTGGTTGCGGCCCTTGCTATTGGAAGCACGCTCATCTCTGCATATGGCCTCAAGAAC CACGCGCGCATTGCCAAAGTCATGAGGGTGTCATACTTGGCAGCCTTGCCCAGTGTGTTGTCCAATCCTTTCCAC TTCCTCACGCTATTCTTCTCGTCTCTAATCGCACTGTTGCCGTTATTGTCCATTTCCCTCTATGCGTGGTTGGAC AGGCTGATATGCGCCGTCATCTCCTTGGCCATGTTTGGCCTTGGCTTCCGCGTGGCTATAGCTCAAGGCCTAATG CTTCTCATGTCGTACGGGGGCAGCAACGGACACTCTGGTGTGTCGTCGGTCTTGCGCGAGATCGAATCAGAATCC GCCATTGCTCGCCTCGAAGAGGCACAGTTTTGGCAGGTCAACTACGGGCTATGTATGGCCAACGTGAGAGTCAGC GTTGGCAAGGATTGCGACGAGACGACGCTCAGCAGATTGCGACATCGAATCTCCTCCCTTATCCAGAATCGCCTT GGTGAAGGCTACGGGATGGGAGGCAATATACGTTGGGAGGTGACGTTACAGATGAATGCCGACGCGGGACTCTGA |