© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04689 |
| Gene name | |
| Location | scaffold_05:217486..218648 |
| Strand | + |
| Gene length (bp) | 1162 |
| Transcript length (bp) | 1035 |
| Coding sequence length (bp) | 1035 |
| Protein length (aa) | 345 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16546 | SGTA_dimer | Homodimerisation domain of SGTA | 1.1E-23 | 8 | 71 |
| PF00515 | TPR_1 | Tetratricopeptide repeat | 2.4E-08 | 110 | 143 |
| PF07719 | TPR_2 | Tetratricopeptide repeat | 6.2E-07 | 110 | 143 |
| PF13414 | TPR_11 | TPR repeat | 8.8E-09 | 117 | 154 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.1E-02 | 116 | 143 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.8E-01 | 179 | 206 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 2.7E-04 | 116 | 163 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 1.0E-02 | 156 | 203 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04689 MASQQSSRQRLALAICHFLNTSLSDGTLAADEKDSIDVAVSCIADSFKVDAADEQAVKSAVGTKSLLQIFSVYDN LKSNEGTSTSASASSSASASKPSSEKPSESQKKEAEGLKSKGNAAMAQKQYQQAITLYSQALDLDPTNAVFLSNR AAAHSAAKDHSSAKQDAEAAVAIDPSYTKAWSRLGLARFALGDAKGAMEAYAKGIEHEGNGGSEAMRKGFETAKR RVDELDGAADAGDNISSSRTAPQSSPSGMPDFGSIMSNPMFASMAQNLMSNPDLMSSLMSNPRLREMADSFGAGG AGGGGMPDIGSLMSDPNIADMARNLMGGANPGQDRNNNNNNSQP* |
| Coding | >Ophcf2|04689 ATGGCATCGCAGCAAAGCTCGAGGCAGCGCCTCGCCCTCGCCATCTGTCACTTTCTCAACACGTCGCTCTCGGAC GGGACTCTCGCCGCCGATGAAAAGGACTCCATCGACGTGGCCGTCAGTTGCATCGCGGATTCCTTCAAGGTCGAC GCCGCAGATGAGCAGGCGGTAAAGTCGGCGGTGGGAACGAAGTCGCTATTGCAAATCTTCTCAGTCTACGATAAT CTCAAAAGCAACGAAGGCACAAGCACAAGCGCCAGTGCCAGTTCCAGCGCCAGCGCCAGCAAGCCAAGCTCCGAG AAGCCATCGGAATCGCAGAAGAAGGAGGCCGAAGGCCTCAAATCCAAGGGGAACGCCGCCATGGCCCAGAAACAA TACCAACAAGCCATAACCCTCTACAGCCAAGCCCTCGACCTCGACCCCACAAACGCAGTCTTCCTCTCCAACCGC GCGGCCGCTCACTCGGCCGCAAAGGATCACTCTAGCGCAAAACAGGACGCCGAAGCCGCCGTCGCCATCGACCCT TCCTACACAAAGGCCTGGTCTCGCCTCGGACTCGCCCGCTTCGCTCTCGGGGACGCAAAGGGCGCCATGGAAGCT TACGCAAAGGGCATCGAGCATGAGGGCAACGGCGGGTCGGAAGCGATGCGCAAGGGCTTCGAGACGGCCAAGCGT CGCGTCGACGAATTGGACGGCGCCGCAGATGCCGGCGACAACATCTCTTCATCCCGCACCGCGCCCCAGTCTTCC CCTTCGGGCATGCCCGACTTCGGCTCCATCATGAGCAACCCAATGTTCGCCAGCATGGCCCAGAACCTCATGAGC AACCCGGACCTCATGTCAAGCCTCATGAGCAACCCGCGCCTTCGCGAGATGGCCGACTCGTTTGGCGCCGGAGGT GCCGGAGGTGGCGGAATGCCCGATATCGGCAGCCTCATGTCCGACCCTAATATCGCCGACATGGCACGCAATCTC ATGGGCGGCGCGAATCCCGGCCAGGACAGAAACAACAACAATAATAACTCGCAGCCTTAA |
| Transcript | >Ophcf2|04689 ATGGCATCGCAGCAAAGCTCGAGGCAGCGCCTCGCCCTCGCCATCTGTCACTTTCTCAACACGTCGCTCTCGGAC GGGACTCTCGCCGCCGATGAAAAGGACTCCATCGACGTGGCCGTCAGTTGCATCGCGGATTCCTTCAAGGTCGAC GCCGCAGATGAGCAGGCGGTAAAGTCGGCGGTGGGAACGAAGTCGCTATTGCAAATCTTCTCAGTCTACGATAAT CTCAAAAGCAACGAAGGCACAAGCACAAGCGCCAGTGCCAGTTCCAGCGCCAGCGCCAGCAAGCCAAGCTCCGAG AAGCCATCGGAATCGCAGAAGAAGGAGGCCGAAGGCCTCAAATCCAAGGGGAACGCCGCCATGGCCCAGAAACAA TACCAACAAGCCATAACCCTCTACAGCCAAGCCCTCGACCTCGACCCCACAAACGCAGTCTTCCTCTCCAACCGC GCGGCCGCTCACTCGGCCGCAAAGGATCACTCTAGCGCAAAACAGGACGCCGAAGCCGCCGTCGCCATCGACCCT TCCTACACAAAGGCCTGGTCTCGCCTCGGACTCGCCCGCTTCGCTCTCGGGGACGCAAAGGGCGCCATGGAAGCT TACGCAAAGGGCATCGAGCATGAGGGCAACGGCGGGTCGGAAGCGATGCGCAAGGGCTTCGAGACGGCCAAGCGT CGCGTCGACGAATTGGACGGCGCCGCAGATGCCGGCGACAACATCTCTTCATCCCGCACCGCGCCCCAGTCTTCC CCTTCGGGCATGCCCGACTTCGGCTCCATCATGAGCAACCCAATGTTCGCCAGCATGGCCCAGAACCTCATGAGC AACCCGGACCTCATGTCAAGCCTCATGAGCAACCCGCGCCTTCGCGAGATGGCCGACTCGTTTGGCGCCGGAGGT GCCGGAGGTGGCGGAATGCCCGATATCGGCAGCCTCATGTCCGACCCTAATATCGCCGACATGGCACGCAATCTC ATGGGCGGCGCGAATCCCGGCCAGGACAGAAACAACAACAATAATAACTCGCAGCCTTAA |
| Gene | >Ophcf2|04689 ATGGTTCTTTCCCCTTCCCCCCTCTATCTCCTCCCCTTTCTTCCCCACCGACAAGCTGACCGCGAACCTCACCCC CAGGCATCGCAGCAAAGCTCGAGGCAGCGCCTCGCCCTCGCCATCTGTCACTTTCTCAACACGTCGCTCTCGGAC GGGACTCTCGCCGCCGATGAAAAGGACTCCATCGACGTGGCCGTCAGTTGCATCGCGGATTCCTTCAAGGTCGAC GCCGCAGATGAGCAGGCGGTAAAGTCGGCGGTGGGAACGAAGTCGCTATTGCAAATCTTCTCAGTCTACGATAAT CTCAAAAGCAACGAAGGCACAAGCACAAGCGCCAGTGCCAGTTCCAGCGCCAGCGCCAGCAAGCCAAGCTCCGAG AAGCCATCGGAATCGCAGAAGAAGGAGGCCGAAGGCCTCAAATCCAAGGGGAACGCCGCCATGGCCCAGAAACAA TACCAACAAGCCATAACCCTCTACAGCCAAGCCCTCGACCTCGACCCCACAAACGCAGTCTTCCTCTCCAACCGC GCGGCCGCTCACTCGGCCGCAAAGGATCACTCTAGCGCAAAACAGGACGCCGAAGCCGCCGTCGCCATCGACCCT TCCTACACAAAGGCCTGGTCTCGCCTCGGACTCGCCCGCTTCGCTCTCGGGGACGCAAAGGGCGCCATGGAAGCT TACGCAAAGGGCATCGAGCATGAGGGCAACGGCGGGTCGGAAGCGATGCGCAAGGGCTTCGAGACGGCCAAGCGT CGCGTCGACGAATTGGACGGCGCCGCAGATGCCGGCGACAACATCTCTTCATCCCGCACCGCGCCCCAGTCTTCC CCTTCGGGCATGCCCGACTTCGGCTCCATCATGAGCAACCCAATGTTCGCCAGCATGGCCCAGAACCTCATGAGC AACCCGGACCTCATGTCAAGCCTCATGAGCAACCCGCGCCTTCGCGAGATGGCCGACTCGTTTGGCGCCGGAGGT GCCGGAGGTGGCGGAATGCCCGATATCGGCAGCCTCATGTCCGACCCTAATATCGCCGACATGTCAGTCTTTCTC GACCACTGTCGTCTCTCTGAACTTGCTAACTTGACTTAGGGCACGCAATCTCATGGGCGGCGCGAATCCCGGCCA GGACAGAAACAACAACAATAATAACTCGCAGCCTTAA |