© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04682 |
| Gene name | |
| Location | scaffold_05:193577..195288 |
| Strand | + |
| Gene length (bp) | 1711 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.7E-34 | 73 | 476 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 138 | 160 | 22 |
| 3 | 167 | 184 | 17 |
| 4 | 194 | 216 | 22 |
| 5 | 223 | 244 | 21 |
| 6 | 254 | 276 | 22 |
| 7 | 288 | 310 | 22 |
| 8 | 330 | 352 | 22 |
| 9 | 365 | 387 | 22 |
| 10 | 392 | 414 | 22 |
| 11 | 421 | 443 | 22 |
| 12 | 458 | 480 | 22 |
| 13 | 501 | 523 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 192.38 | 99.19 | 285.57 |
| Alive | In ants, during behavior modification | 181.42 | 91.07 | 271.78 |
| Dead | In ants, recently dead | 58.19 | 32.17 | 84.21 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.821848 | no |
| Alive | Dead | 0.000238 | yes |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04682 MKVTSLLQRLKAGEPVQKPESVRPPSTSHVIPSSSGDDSDGGALVTDVKFLGRARPLVFSGPLAEAGFIFTVVLS MMTSEYFVGGFDLILPSIAEALHMPPAARTWPAGVVTLTTASLLQPFARLCDMYGSRRVFLYGQAWLLAWSVVTG FSVNTTMLIVCRAMQGIGAAAFLPAGLALLGHTYRPGPRKNVAFSIYGAFACVGFYFGIFLGALAAEFMTWRWYF WFGAVACLITLASGLLTIPRDLSDVNPDAAMDWLGVCTIVPGLVLVVFAFTDAGDAFGGWRNPYIFVTLIVGVLF LAAAVYVQGWVSAQPLLPPALFKPKYMKRLMLSLFCYYGVFGIFLLYTSFYIENTLGVKPLMAAAWYTPLAVGGM FLAIGGGLVLHIIPNRILLLISGFGFFLSVLLFALIPGPDDGKSLSFIYWAYVFSAMLGGTLGIDVTFNVTNVFI TTAMPRRLQAAASGVINSLLYLGVAFWLGVAQTAISTADERQEGGIKPEAQYRIAFWTGVGLAAVGLLLTASIKM GQASAGLTADERLAIEDEERSVSG* |
| Coding | >Ophcf2|04682 ATGAAGGTTACCTCGCTCCTCCAGCGACTCAAGGCTGGTGAGCCCGTCCAGAAACCTGAAAGTGTGCGCCCTCCG TCGACAAGCCATGTCATCCCGTCGTCATCGGGTGACGATAGCGACGGTGGCGCCCTCGTCACCGACGTCAAGTTT CTCGGCCGGGCCCGTCCGCTCGTTTTCTCAGGCCCCCTCGCTGAGGCCGGCTTCATCTTCACTGTCGTTCTCTCC ATGATGACGAGCGAGTACTTCGTCGGCGGCTTCGACCTCATTCTTCCCTCCATCGCCGAGGCGCTACACATGCCA CCCGCAGCCCGCACTTGGCCCGCCGGCGTCGTGACGCTGACGACAGCCTCGCTGCTACAGCCCTTTGCCCGCCTC TGCGACATGTACGGCAGCCGGCGTGTCTTTCTCTATGGCCAGGCCTGGCTGCTAGCCTGGTCCGTCGTCACCGGC TTCAGCGTCAACACCACCATGCTCATCGTCTGCCGCGCCATGCAGGGCATCGGCGCTGCCGCCTTTCTACCGGCC GGTCTCGCCCTACTAGGCCACACGTACCGGCCTGGTCCGCGCAAGAATGTGGCCTTTTCCATCTATGGCGCCTTC GCCTGCGTCGGCTTCTACTTTGGCATCTTCCTCGGCGCCCTGGCGGCGGAGTTCATGACCTGGAGATGGTACTTT TGGTTCGGCGCCGTCGCCTGCCTCATCACCCTGGCCTCTGGCCTACTTACGATCCCTCGCGACCTCTCGGACGTG AATCCGGACGCGGCCATGGACTGGTTAGGCGTCTGCACCATCGTCCCGGGCCTCGTCCTCGTCGTCTTTGCCTTT ACCGACGCCGGCGACGCCTTCGGAGGCTGGCGCAATCCATACATCTTCGTGACGCTCATCGTCGGCGTCTTATTC CTCGCCGCAGCCGTCTACGTGCAGGGCTGGGTCTCGGCTCAGCCGTTGCTGCCGCCGGCTCTGTTCAAGCCCAAG TACATGAAGCGGCTGATGCTGTCGCTGTTTTGCTACTACGGCGTGTTTGGAATCTTTCTTTTGTACACGAGCTTC TACATCGAGAACACCCTCGGCGTCAAGCCTCTCATGGCAGCAGCCTGGTACACTCCTCTCGCCGTCGGCGGCATG TTCCTCGCCATCGGCGGCGGCCTCGTCCTACACATCATCCCCAACCGCATTCTCCTCCTCATCTCCGGCTTCGGC TTCTTCCTCTCCGTCCTCCTCTTCGCCCTCATCCCCGGCCCCGATGACGGGAAGTCCCTCAGCTTCATCTACTGG GCCTACGTCTTCTCCGCTATGCTGGGCGGCACCCTCGGCATCGATGTCACCTTCAACGTCACAAACGTCTTCATC ACTACCGCCATGCCCCGTCGGCTGCAGGCAGCCGCCAGCGGCGTCATCAACAGCCTGCTATATCTGGGCGTCGCC TTCTGGCTCGGCGTCGCACAGACAGCCATCTCGACCGCCGATGAGAGACAAGAGGGGGGCATCAAGCCCGAGGCT CAGTACCGCATTGCCTTTTGGACGGGCGTCGGGCTCGCGGCTGTTGGGCTGCTGCTGACGGCTAGCATAAAAATG GGACAGGCGTCAGCTGGTCTGACGGCTGACGAGAGGCTAGCGATAGAGGACGAGGAGAGAAGCGTGAGTGGTTAA |
| Transcript | >Ophcf2|04682 ATGAAGGTTACCTCGCTCCTCCAGCGACTCAAGGCTGGTGAGCCCGTCCAGAAACCTGAAAGTGTGCGCCCTCCG TCGACAAGCCATGTCATCCCGTCGTCATCGGGTGACGATAGCGACGGTGGCGCCCTCGTCACCGACGTCAAGTTT CTCGGCCGGGCCCGTCCGCTCGTTTTCTCAGGCCCCCTCGCTGAGGCCGGCTTCATCTTCACTGTCGTTCTCTCC ATGATGACGAGCGAGTACTTCGTCGGCGGCTTCGACCTCATTCTTCCCTCCATCGCCGAGGCGCTACACATGCCA CCCGCAGCCCGCACTTGGCCCGCCGGCGTCGTGACGCTGACGACAGCCTCGCTGCTACAGCCCTTTGCCCGCCTC TGCGACATGTACGGCAGCCGGCGTGTCTTTCTCTATGGCCAGGCCTGGCTGCTAGCCTGGTCCGTCGTCACCGGC TTCAGCGTCAACACCACCATGCTCATCGTCTGCCGCGCCATGCAGGGCATCGGCGCTGCCGCCTTTCTACCGGCC GGTCTCGCCCTACTAGGCCACACGTACCGGCCTGGTCCGCGCAAGAATGTGGCCTTTTCCATCTATGGCGCCTTC GCCTGCGTCGGCTTCTACTTTGGCATCTTCCTCGGCGCCCTGGCGGCGGAGTTCATGACCTGGAGATGGTACTTT TGGTTCGGCGCCGTCGCCTGCCTCATCACCCTGGCCTCTGGCCTACTTACGATCCCTCGCGACCTCTCGGACGTG AATCCGGACGCGGCCATGGACTGGTTAGGCGTCTGCACCATCGTCCCGGGCCTCGTCCTCGTCGTCTTTGCCTTT ACCGACGCCGGCGACGCCTTCGGAGGCTGGCGCAATCCATACATCTTCGTGACGCTCATCGTCGGCGTCTTATTC CTCGCCGCAGCCGTCTACGTGCAGGGCTGGGTCTCGGCTCAGCCGTTGCTGCCGCCGGCTCTGTTCAAGCCCAAG TACATGAAGCGGCTGATGCTGTCGCTGTTTTGCTACTACGGCGTGTTTGGAATCTTTCTTTTGTACACGAGCTTC TACATCGAGAACACCCTCGGCGTCAAGCCTCTCATGGCAGCAGCCTGGTACACTCCTCTCGCCGTCGGCGGCATG TTCCTCGCCATCGGCGGCGGCCTCGTCCTACACATCATCCCCAACCGCATTCTCCTCCTCATCTCCGGCTTCGGC TTCTTCCTCTCCGTCCTCCTCTTCGCCCTCATCCCCGGCCCCGATGACGGGAAGTCCCTCAGCTTCATCTACTGG GCCTACGTCTTCTCCGCTATGCTGGGCGGCACCCTCGGCATCGATGTCACCTTCAACGTCACAAACGTCTTCATC ACTACCGCCATGCCCCGTCGGCTGCAGGCAGCCGCCAGCGGCGTCATCAACAGCCTGCTATATCTGGGCGTCGCC TTCTGGCTCGGCGTCGCACAGACAGCCATCTCGACCGCCGATGAGAGACAAGAGGGGGGCATCAAGCCCGAGGCT CAGTACCGCATTGCCTTTTGGACGGGCGTCGGGCTCGCGGCTGTTGGGCTGCTGCTGACGGCTAGCATAAAAATG GGACAGGCGTCAGCTGGTCTGACGGCTGACGAGAGGCTAGCGATAGAGGACGAGGAGAGAAGCGTGAGTGGTTAA |
| Gene | >Ophcf2|04682 ATGAAGGTTACCTCGCTCCTCCAGCGACTCAAGGCTGGTGAGCCCGTCCAGAAACCTGAAAGTGTGCGCCCTCCG TCGACAAGCCATGTCATCCCGTCGTCATCGGGTGACGATAGCGACGGTGGCGCCCTCGTCACCGACGTCAAGTTT CTCGGCCGGGCCCGTCCGCTCGTTTTCTCAGGCCCCCTCGCTGAGGCCGGCTTCATCTTCACTGTCGTTCTCTCC ATGATGACGAGCGAGTACTTCGTCGGCGGCTTCGACCTCATTCTTCCCTCCATCGCCGAGGCGCTACACATGCCA CCCGCAGCCCGCACTTGGCCCGCCGGCGTCGTGACGCTGACGACAGCCTCGCTGCTACAGCCCTTTGCCCGCCTC TGCGACATGTACGGCAGCCGGCGTGTCTTTCTCTATGGCCAGGCCTGGCTGCTAGCCTGGTCCGTCGTCACCGGC TTCAGCGTCAACACCACCATGCTCATCGTCTGCCGCGCCATGCAGGGCATCGGCGCTGCCGCCTTTCTACCGGCC GGTCTCGCCCTACTAGGCCACACGTACCGGCCTGGTCCGCGCAAGAATGTGGCCTTTTCCATCTATGGCGCCTTC GCCTGCGTCGGCTTCTACTTTGGCATCTTCCTCGGCGCCCTGGCGGCGGAGTTCATGACCTGGAGATGGTACTTT TGGTTCGGCGCCGTCGCCTGCCTCATCACCCTGGCCTCTGGCCTACTTACGATCCCTCGCGACCTCTCGGACGTG AATCCGGACGCGGCCATGGACTGGTTAGGCGTCTGCACCATCGTCCCGGGCCTCGTCCTCGTCGTCTTTGCCTTT ACCGACGCCGGCGACGCCTTCGGAGGCTGGCGCAATCCATACATCTTCGTGACGCTCATCGTCGGCGTCTTATTC CTCGCCGCAGCCGTCTACGTGCAGGGCTGGGTCTCGGCTCAGCCGTTGCTGCCGCCGGCTCTGTTCAAGCCCAAG TACATGAAGCGGCTGATGCTGTCGCTGTTTTGCTACTACGGCGTGTTTGGAATCTTTCTTTTGTACACGAGCTTC TAGTACGTTCGACTTCATCTCCTGAAGCAATGAAGAAGACGATGGCTAACAAATCGAAAACAGCATCGAGAACAC CCTCGGCGTCAAGCCTCTCATGGCAGCAGCCTGGTACACTCCTCTCGCCGTCGGCGGCATGTTCCTCGCCATCGG CGGCGGCCTCGTCCTACACATCATCCCCAACCGCATTCTCCTCCTCATCTCCGGCTTCGGCTTCTTCCTCTCCGT CCTCCTCTTCGCCCTCATCCCCGGCCCCGATGACGGGAAGTCCCTCAGCTTCATCTACTGGGCCTACGTCTTCTC CGCTATGCTGGGCGGCACCCTCGGCATCGATGTCACCTTCAACGTCACAAACGTCTTCATCACTACCGCCATGCC CCGTCGGCTGCAGGCAGCCGCCAGCGGCGTCATCAACAGCCTGCTATATCTGGGCGTCGCCTTCTGGCTCGGCGT CGCACAGACAGCCATCTCGACCGCCGATGAGAGACAAGAGGGGGGCATCAAGCCCGAGGCTCAGTACCGCATTGC CTTTTGGACGGGCGTCGGGCTCGCGGCTGTTGGGCTGCTGCTGACGGCTAGCATAAAAATGGGACAGGCGTCAGC TGGTCTGACGGCTGACGAGAGGCTAGCGATAGAGGACGAGGAGAGAAGCGTGAGTGGTTAA |