© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04628 |
| Gene name | |
| Location | scaffold_04:3743566..3745766 |
| Strand | + |
| Gene length (bp) | 2200 |
| Transcript length (bp) | 1611 |
| Coding sequence length (bp) | 1611 |
| Protein length (aa) | 537 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 6.2E-84 | 34 | 489 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 64 | 22 |
| 2 | 77 | 99 | 22 |
| 3 | 119 | 141 | 22 |
| 4 | 173 | 190 | 17 |
| 5 | 197 | 219 | 22 |
| 6 | 239 | 258 | 19 |
| 7 | 271 | 293 | 22 |
| 8 | 329 | 351 | 22 |
| 9 | 372 | 389 | 17 |
| 10 | 394 | 416 | 22 |
| 11 | 448 | 467 | 19 |
| 12 | 482 | 504 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04628 MGAGRSSALERFQCPKDEDANYDNTTWCNRDLIPTPAQRRTFGVWSYLGYWTVSGSNVSAWLIGSTLLDFGLSPQ QAIGAVVFGGLLTGLLAVACGWMGEVHHIGFTVCSRFSWGMRGSYFPVVLRVFVGCIWFGLQAFWGGQAMRVALG AIFPGLAHLPNRFDPNSHLQTNDFIGLLLWMCLFIPGVMIKPEKLQISFFVCFVLFCGSCIGLLIWAVTRVGGPG TMFHEPGSAPNVGWAFMFGLTSVLGAWGGGTLGQSDWTRYASRRYAPILSQLLASPITISVTAIIGIIVTSATRD ILGGQLQWNPIFLLANIQEHYDSSPAARAGVFFASAGLVCSQLSISLVLNAMSCGMDLAGLWPKYINIRRGAYIM AIVGIATQPWQLLATAAKFLTVMSGFGVFMAPATGILLADYHLVRKRRLRVEDLYAGEPCSIYWFDLGFNWRAFV AFFAGVWPLLPGLIGVVNKDQSEAMSGWIRLYNLTFIVGLCIGFSVFWLLNLLLPVPGKGEEMAFSADSDKPPRD GTPDHKVSSIP* |
| Coding | >Ophcf2|04628 ATGGGCGCTGGCAGGTCGTCAGCGCTTGAGCGGTTTCAATGCCCCAAGGATGAAGACGCCAACTACGACAACACG ACCTGGTGCAACAGAGACTTGATCCCGACACCGGCTCAGAGACGGACATTTGGCGTGTGGTCCTACCTGGGTTAC TGGACCGTTTCTGGCTCCAACGTGTCGGCATGGCTCATCGGCAGTACCCTCTTGGATTTTGGCCTGAGCCCGCAG CAGGCCATCGGCGCCGTTGTTTTCGGAGGCTTGTTGACCGGCCTGCTCGCCGTCGCCTGCGGATGGATGGGAGAA GTCCATCACATCGGCTTCACCGTCTGCAGTCGCTTCTCGTGGGGGATGCGCGGTTCCTACTTTCCCGTCGTTCTG CGCGTCTTCGTTGGCTGTATCTGGTTCGGACTACAGGCCTTCTGGGGGGGGCAGGCCATGCGAGTTGCCCTCGGG GCCATATTCCCGGGTCTTGCCCATCTCCCCAACCGCTTCGATCCCAACTCTCATCTGCAGACCAATGACTTCATC GGCCTGCTTCTATGGATGTGTCTCTTCATACCGGGCGTCATGATCAAACCGGAGAAGCTGCAGATTAGCTTCTTT GTCTGCTTCGTCCTCTTTTGCGGATCCTGTATCGGCCTGCTCATCTGGGCCGTCACTCGGGTCGGAGGCCCAGGC ACCATGTTTCACGAGCCCGGGTCGGCCCCCAACGTCGGATGGGCCTTCATGTTTGGCCTCACCTCTGTCCTCGGA GCCTGGGGAGGCGGCACGCTCGGACAGTCTGACTGGACAAGATATGCCAGTCGCCGATATGCGCCCATCCTCTCA CAGCTGCTGGCGTCTCCCATCACCATCTCGGTGACGGCCATCATCGGCATCATCGTCACGAGCGCGACGAGAGAC ATATTGGGAGGCCAGCTGCAGTGGAACCCCATCTTCCTGCTAGCCAACATCCAAGAGCATTACGATTCGTCGCCG GCCGCCCGCGCGGGAGTCTTCTTCGCCAGTGCCGGCCTCGTCTGCTCGCAGCTGTCGATATCGCTTGTTCTCAAC GCCATGAGTTGCGGCATGGACTTGGCCGGCTTGTGGCCCAAGTACATCAACATCCGGCGCGGCGCATACATCATG GCCATTGTAGGCATCGCGACTCAGCCATGGCAGCTTCTGGCAACGGCAGCCAAGTTCTTGACCGTGATGAGCGGT TTCGGCGTCTTCATGGCCCCGGCCACAGGGATCTTGCTCGCCGACTATCACCTCGTCCGCAAACGCAGGCTCCGC GTCGAGGATCTGTACGCCGGCGAGCCTTGTTCGATATACTGGTTCGACCTTGGCTTCAACTGGAGGGCCTTTGTC GCCTTTTTCGCAGGCGTATGGCCGCTTCTACCCGGCTTGATTGGCGTTGTCAACAAAGACCAGTCCGAAGCGATG TCGGGCTGGATTCGGCTTTACAACCTCACCTTTATCGTCGGGCTCTGTATCGGCTTCTCCGTCTTCTGGCTTCTC AATCTTCTGCTGCCTGTCCCTGGAAAAGGCGAAGAGATGGCGTTTTCTGCCGATAGCGACAAGCCGCCACGAGAT GGCACGCCGGATCACAAAGTCTCGAGTATCCCGTAG |
| Transcript | >Ophcf2|04628 ATGGGCGCTGGCAGGTCGTCAGCGCTTGAGCGGTTTCAATGCCCCAAGGATGAAGACGCCAACTACGACAACACG ACCTGGTGCAACAGAGACTTGATCCCGACACCGGCTCAGAGACGGACATTTGGCGTGTGGTCCTACCTGGGTTAC TGGACCGTTTCTGGCTCCAACGTGTCGGCATGGCTCATCGGCAGTACCCTCTTGGATTTTGGCCTGAGCCCGCAG CAGGCCATCGGCGCCGTTGTTTTCGGAGGCTTGTTGACCGGCCTGCTCGCCGTCGCCTGCGGATGGATGGGAGAA GTCCATCACATCGGCTTCACCGTCTGCAGTCGCTTCTCGTGGGGGATGCGCGGTTCCTACTTTCCCGTCGTTCTG CGCGTCTTCGTTGGCTGTATCTGGTTCGGACTACAGGCCTTCTGGGGGGGGCAGGCCATGCGAGTTGCCCTCGGG GCCATATTCCCGGGTCTTGCCCATCTCCCCAACCGCTTCGATCCCAACTCTCATCTGCAGACCAATGACTTCATC GGCCTGCTTCTATGGATGTGTCTCTTCATACCGGGCGTCATGATCAAACCGGAGAAGCTGCAGATTAGCTTCTTT GTCTGCTTCGTCCTCTTTTGCGGATCCTGTATCGGCCTGCTCATCTGGGCCGTCACTCGGGTCGGAGGCCCAGGC ACCATGTTTCACGAGCCCGGGTCGGCCCCCAACGTCGGATGGGCCTTCATGTTTGGCCTCACCTCTGTCCTCGGA GCCTGGGGAGGCGGCACGCTCGGACAGTCTGACTGGACAAGATATGCCAGTCGCCGATATGCGCCCATCCTCTCA CAGCTGCTGGCGTCTCCCATCACCATCTCGGTGACGGCCATCATCGGCATCATCGTCACGAGCGCGACGAGAGAC ATATTGGGAGGCCAGCTGCAGTGGAACCCCATCTTCCTGCTAGCCAACATCCAAGAGCATTACGATTCGTCGCCG GCCGCCCGCGCGGGAGTCTTCTTCGCCAGTGCCGGCCTCGTCTGCTCGCAGCTGTCGATATCGCTTGTTCTCAAC GCCATGAGTTGCGGCATGGACTTGGCCGGCTTGTGGCCCAAGTACATCAACATCCGGCGCGGCGCATACATCATG GCCATTGTAGGCATCGCGACTCAGCCATGGCAGCTTCTGGCAACGGCAGCCAAGTTCTTGACCGTGATGAGCGGT TTCGGCGTCTTCATGGCCCCGGCCACAGGGATCTTGCTCGCCGACTATCACCTCGTCCGCAAACGCAGGCTCCGC GTCGAGGATCTGTACGCCGGCGAGCCTTGTTCGATATACTGGTTCGACCTTGGCTTCAACTGGAGGGCCTTTGTC GCCTTTTTCGCAGGCGTATGGCCGCTTCTACCCGGCTTGATTGGCGTTGTCAACAAAGACCAGTCCGAAGCGATG TCGGGCTGGATTCGGCTTTACAACCTCACCTTTATCGTCGGGCTCTGTATCGGCTTCTCCGTCTTCTGGCTTCTC AATCTTCTGCTGCCTGTCCCTGGAAAAGGCGAAGAGATGGCGTTTTCTGCCGATAGCGACAAGCCGCCACGAGAT GGCACGCCGGATCACAAAGTCTCGAGTATCCCGTAG |
| Gene | >Ophcf2|04628 ATGGGCGCTGGCAGGTCGTCAGCGCTTGAGCGGTTTCAATGGTATATATGCCTAGATGCCCGTGATGATGCGTGC CGGCTGTTGTGCTGATGCGGTTGACGTCTTTAGCCCCAAGGATGAAGACGCCAACTACGACAACACGACCTGGTG CAACAGAGACTTGATCCCGACACCGGCTCAGAGACGGACATTTGGCGTGTGGTCCTACCTGGGTATCATCGCTCG CTCACCGCCGTTTCGACCCATCAAGGCTGAAGATGCCCTACCCAGGTTACTGGACCGTTTCTGGCTCCAACGTGT CGGCATGGCTCATCGGCAGTACCCTCTTGGATTTTGGCCTGAGCCCGCAGCAGGCCATCGGCGCCGTTGTACGCT TCTTTTTCAAGTCGAAGTACAGGGACCGAACAGCAAGGGGGACTAACTACAGTGATAGGTTTTCGGAGGCTTGTT GACCGGCCTGCTCGCCGTCGCCTGCGGATGGATGGGAGAAGTCCATCACATCGGCTTCACCGTCTGCAGTCGCTT CTCGTGGGGGATGCGCGGTTCCTACTGTTAGTCGGCTCCGTTCCCCTGAGGCGCAGAAGATGATACATGGCATAA TTCCCAGTTCCCGTCGTTCTGCGCGTCTTCGTTGGCTGTATCTGGTTCGGACTACAGGCCTTCTGGGGGGGGCAG GCCATGCGAGTTGCCCTCGGGGCCATATTCCCGGGTGAGGTCATCTTTGAGCCCGGCACTTGTCCATCTTCGCAT TGACAAGTCTCTAGGTCTTGCCCATCTCCCCAACCGCTTCGATCCCAACTCTCATCTGCAGACCAATGACTTCAT CGGCCTGCTTCTATGGATGTGTCTCTTCATACCGGGCGTCATGATCAAACCGGAGAAGCTGCAGATTAGCTTCTT TGTCTGCTTCGTCCTCTTTTGCGGATCCTGTATCGGCCTGCTCATCTGGTAGGCTGACGTGCTCTGCTCCGGGTT GTTCATTACATCGCTAACAAGCCCTCAAAAGGGCCGTCACTCGGGTCGGAGGCCCAGGCACCATGTTTCACGAGC CCGGGTCGGCCCCCAACGTCGGATGGGCCTTCATGTTTGGCCTCACCTCTGTCCTCGGAGCCTGGGGAGGCGGCA CGCTCGGACAGTCTGACTGGACAAGATATGCCAGTCGCCGATATGCGCCCATCCTCTCACAGCTGCTGGCGTCTC CCATCACCATCTCGGTGACGGCCATCATCGGCATCATCGTCACGAGCGCGACGAGAGACATATTGGGAGGCCAGC TGCAGTGGAACCCCATCTTCCTGCTAGCCAACATCCAAGAGCATTACGATTCGTCGCCGGCCGCCCGCGCGGGAG TCTTCTTCGCCAGTGCCGGCCTCGTCTGCTCGCAGCTGTCGGTGAGACGAGGTCCAGACCCCTTGCCGAAGCGCT GCGGCATGTTGATGTGTCTGCTATAGATATCGCTTGTTCTCAACGCCATGAGTTGCGGCATGGACTTGGCCGGCT TGTGGCCCAAGTACATCAACATCCGGCGCGGCGCATACATCATGGCCATTGTAGGCATCGCGACTCAGTAAGTAA CGTTTTTAGTTCACCATGGCTTCGTTGACTTGACAACTCTGTAGGCCATGGCAGCTTCTGGCAACGGCAGCCAAG TTCTTGACCGTGATGAGCGGTTTCGGCGTCTTCATGGCCCCGGCCACGTGAGTGTCCCTGAAAACGTCTGCCCTG CGAGGAACTTCTCGGCTGAAAGCGTGATGAAACAAAGAGGGATCTTGCTCGCCGACTATCACCTCGTCCGCAAAC GCAGGCTCCGCGTCGAGGATCTGTACGCCGGCGAGCCTTGTTCGATATACTGGTTCGACCTTGGCTTCAACTGGA GGGCCTTTGTCGCCTTTTTCGCAGGCGTATGGCCGCTTCTACGTACGTATAGCCATGTTACGAGTCGCGATAGAC GGAAAGACTGACGTCTTCAGCCGGCTTGATTGGCGTTGTCAACAAAGACCAGTCCGAAGCGATGTCGGGCTGGAT TCGGCTTTACAACCTCACCTTTATCGTCGGGCTCTGTATCGGCTTCTCCGTCTTCTGGCTTCTCAATCTTCTGCT GCCTGTCCCTGGAAAAGGCGAAGAGATGGCGTTTTCTGCCGATAGCGACAAGCCGCCACGAGATGGCACGCCGGA TCACAAAGTCTCGAGTATCCCGTAG |