© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04618 |
| Gene name | |
| Location | scaffold_04:3719204..3720901 |
| Strand | + |
| Gene length (bp) | 1697 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.2E-19 | 58 | 246 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.5E-09 | 265 | 454 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 7.0E-12 | 83 | 319 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 86 | 108 | 22 |
| 2 | 118 | 137 | 19 |
| 3 | 187 | 209 | 22 |
| 4 | 219 | 238 | 19 |
| 5 | 258 | 280 | 22 |
| 6 | 308 | 330 | 22 |
| 7 | 337 | 357 | 20 |
| 8 | 367 | 389 | 22 |
| 9 | 402 | 424 | 22 |
| 10 | 439 | 461 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 117.85 | 65.96 | 169.74 |
| Alive | In ants, during behavior modification | 118.96 | 66.00 | 171.92 |
| Dead | In ants, recently dead | 103.08 | 56.99 | 149.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.972930 | no |
| Alive | Dead | 0.425037 | no |
| Dead | Fungus | 0.534676 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04618 MAIFSRFIGRHRPESSDAVAKTETPPVGDDALVEAQVDERSFLQKAMPVFACGAGLFSDGYINNVIGSVNTVLRL QYGDVYKNTTAASNVTAIAFAGTVVGQLVFGFASDRWSRSNSLMTSTVILIVFTALAAGSYYHGDPVAMFSMLAA WRFFVGIGIGGEYPAGSVACAESSGELRSGTRNRWFILFTNSMIDWGFVFGAFIPYVVAAAAQNRNYSTIWRTSL GIGVVFPLALLLMRMRLKEPEEFARESMRRKTPYLLVLRYYWFRLFCVSLVWFLYDFSTYAFGIYVSSILSAIYG DNASLTTVFGWTTVINTFYLPGTLFGALVSDWLGPKYTLIGGVTVQAIVGFIMAAVYDRISHNVAAFAVIYGLFL TLGELGPGNNIGLLAAKTCATGVRGRYYGISAAIGKIGAFVGSYVFPYIQAAGGASGSVQSAQYPFYVASSFCIL SAAIAMCIPNIGQDTITREDAEFRAYLEAKGWDTSLLGLAKDDSQAVTYAEDENQRQEPTKQQ* |
| Coding | >Ophcf2|04618 ATGGCCATCTTCAGCCGCTTCATCGGCCGCCATCGTCCCGAGTCCTCGGACGCGGTTGCAAAGACTGAAACCCCC CCGGTCGGAGACGATGCCCTTGTCGAGGCGCAGGTCGATGAAAGGTCATTTCTCCAAAAGGCCATGCCCGTCTTC GCCTGCGGGGCTGGTCTCTTCTCCGACGGTTACATCAACAATGTCATCGGCTCCGTCAACACAGTCCTCCGGCTC CAATACGGCGACGTATACAAGAACACGACAGCAGCCTCCAACGTGACCGCCATTGCCTTTGCCGGCACCGTCGTC GGTCAGCTCGTCTTCGGCTTCGCCTCGGATCGATGGTCTCGCTCCAACTCGCTCATGACGTCGACAGTCATCCTC ATCGTCTTTACCGCCCTCGCCGCCGGCTCCTACTATCATGGCGATCCCGTTGCCATGTTCAGCATGCTGGCTGCC TGGCGCTTCTTCGTGGGCATCGGTATAGGTGGCGAGTATCCAGCCGGCAGCGTCGCCTGCGCCGAGTCGAGCGGC GAGCTGCGTAGCGGGACGCGGAACCGATGGTTCATCCTCTTTACCAACAGCATGATTGACTGGGGCTTCGTCTTT GGCGCCTTTATCCCTTATGTCGTCGCTGCGGCTGCCCAGAACCGCAACTACTCGACCATTTGGCGCACCAGCCTC GGCATCGGCGTCGTCTTCCCTCTCGCCCTGCTGCTGATGCGCATGCGCCTCAAGGAGCCGGAAGAGTTCGCGCGC GAGTCGATGCGACGCAAGACGCCATATCTGCTGGTGCTGCGCTACTACTGGTTCCGTCTGTTTTGCGTCAGCCTC GTCTGGTTCCTCTACGATTTCAGCACATACGCCTTTGGCATTTACGTCTCGTCAATCCTCAGCGCCATCTACGGC GACAACGCCTCCCTCACCACCGTCTTCGGCTGGACGACCGTGATAAACACCTTTTACCTGCCAGGCACCTTGTTT GGCGCCCTCGTCAGCGACTGGCTGGGCCCCAAGTACACGCTCATCGGGGGCGTCACCGTCCAGGCCATCGTCGGC TTCATCATGGCCGCCGTCTACGACCGCATCTCACACAACGTTGCCGCCTTCGCCGTCATCTACGGCCTCTTCCTC ACCCTTGGCGAGCTCGGTCCGGGCAACAACATCGGCTTACTGGCAGCTAAGACGTGCGCGACGGGCGTCCGCGGC CGCTACTATGGCATTTCCGCCGCCATCGGCAAGATTGGAGCCTTTGTCGGTTCCTACGTCTTCCCTTACATCCAG GCTGCCGGCGGCGCCTCCGGCTCGGTCCAGTCGGCGCAGTATCCGTTCTACGTCGCGTCCAGCTTCTGCATCCTG TCGGCCGCCATCGCCATGTGCATCCCCAACATCGGCCAGGACACCATCACGCGCGAAGACGCCGAGTTCCGGGCC TATCTCGAGGCCAAGGGGTGGGACACGTCCTTGCTGGGGCTTGCCAAGGACGACTCGCAGGCGGTGACCTATGCC GAGGACGAGAATCAGCGGCAGGAGCCTACGAAGCAGCAGTAG |
| Transcript | >Ophcf2|04618 ATGGCCATCTTCAGCCGCTTCATCGGCCGCCATCGTCCCGAGTCCTCGGACGCGGTTGCAAAGACTGAAACCCCC CCGGTCGGAGACGATGCCCTTGTCGAGGCGCAGGTCGATGAAAGGTCATTTCTCCAAAAGGCCATGCCCGTCTTC GCCTGCGGGGCTGGTCTCTTCTCCGACGGTTACATCAACAATGTCATCGGCTCCGTCAACACAGTCCTCCGGCTC CAATACGGCGACGTATACAAGAACACGACAGCAGCCTCCAACGTGACCGCCATTGCCTTTGCCGGCACCGTCGTC GGTCAGCTCGTCTTCGGCTTCGCCTCGGATCGATGGTCTCGCTCCAACTCGCTCATGACGTCGACAGTCATCCTC ATCGTCTTTACCGCCCTCGCCGCCGGCTCCTACTATCATGGCGATCCCGTTGCCATGTTCAGCATGCTGGCTGCC TGGCGCTTCTTCGTGGGCATCGGTATAGGTGGCGAGTATCCAGCCGGCAGCGTCGCCTGCGCCGAGTCGAGCGGC GAGCTGCGTAGCGGGACGCGGAACCGATGGTTCATCCTCTTTACCAACAGCATGATTGACTGGGGCTTCGTCTTT GGCGCCTTTATCCCTTATGTCGTCGCTGCGGCTGCCCAGAACCGCAACTACTCGACCATTTGGCGCACCAGCCTC GGCATCGGCGTCGTCTTCCCTCTCGCCCTGCTGCTGATGCGCATGCGCCTCAAGGAGCCGGAAGAGTTCGCGCGC GAGTCGATGCGACGCAAGACGCCATATCTGCTGGTGCTGCGCTACTACTGGTTCCGTCTGTTTTGCGTCAGCCTC GTCTGGTTCCTCTACGATTTCAGCACATACGCCTTTGGCATTTACGTCTCGTCAATCCTCAGCGCCATCTACGGC GACAACGCCTCCCTCACCACCGTCTTCGGCTGGACGACCGTGATAAACACCTTTTACCTGCCAGGCACCTTGTTT GGCGCCCTCGTCAGCGACTGGCTGGGCCCCAAGTACACGCTCATCGGGGGCGTCACCGTCCAGGCCATCGTCGGC TTCATCATGGCCGCCGTCTACGACCGCATCTCACACAACGTTGCCGCCTTCGCCGTCATCTACGGCCTCTTCCTC ACCCTTGGCGAGCTCGGTCCGGGCAACAACATCGGCTTACTGGCAGCTAAGACGTGCGCGACGGGCGTCCGCGGC CGCTACTATGGCATTTCCGCCGCCATCGGCAAGATTGGAGCCTTTGTCGGTTCCTACGTCTTCCCTTACATCCAG GCTGCCGGCGGCGCCTCCGGCTCGGTCCAGTCGGCGCAGTATCCGTTCTACGTCGCGTCCAGCTTCTGCATCCTG TCGGCCGCCATCGCCATGTGCATCCCCAACATCGGCCAGGACACCATCACGCGCGAAGACGCCGAGTTCCGGGCC TATCTCGAGGCCAAGGGGTGGGACACGTCCTTGCTGGGGCTTGCCAAGGACGACTCGCAGGCGGTGACCTATGCC GAGGACGAGAATCAGCGGCAGGAGCCTACGAAGCAGCAGTAG |
| Gene | >Ophcf2|04618 ATGGCCATCTTCAGCCGCTTCATCGGCCGCCATCGTCCCGAGTCCTCGGACGCGGTTGCAAAGACTGAAACCCCC CCGGTCGGAGACGATGCCCTTGTCGAGGCGCAGGTCGATGAAAGGTCATTTCTCCAAAAGGCCATGCCCGTCTTC GCCTGCGGGGCTGGTCTCTTCTCCGACGGTTACATCAACAATGTGAGTCTTGCCCTCTTCGTCGTCAGGAACAAA GGGACTGAATACGGCCCAGGTCATCGGCTCCGTCAACACAGTCCTCCGGCTCCAATACGGCGACGTATACAAGAA CACGACAGCAGCCTCCAACGTGACCGCCATTGCCTTTGCCGGCACCGTCGTCGGTCAGCTCGTCTTCGGCTTCGC CTCGGATCGATGGTCTCGCTCCAACTCGCTCATGACGTCGACAGTCATCCTCATCGTCTTTACCGCCCTCGCCGC CGGCTCCTACTATCATGGCGATCCCGTTGCCATGTTCAGCATGCTGGCTGCCTGGCGCTTCTTCGTGGGCATCGG TATAGGTGGCGAGTATCCAGCCGGCAGCGTCGCCTGCGCCGAGTCGAGCGGCGAGCTGCGTAGCGGGACGCGGAA CCGATGGTTCATCCTCTTTACCAACAGCATGATTGACTGGGGCTTCGTCTTTGGCGCCTTTATCCCTTGTGAGTC CCAGTCTTGCACTCGTCTCTTCCGTCGTCTTACTTACATCTGTAGATGTCGTCGCTGCGGCTGCCCAGAACCGCA ACTACTCGACCATTTGGCGCACCAGCCTCGGCATCGGCGTCGTCTTCCCTCTCGCCCTGCTGCTGATGCGCATGC GCCTCAAGGAGCCGGAAGAGTTCGCGCGCGAGTCGATGCGACGCAAGACGCCATATCTGCTGGTGCTGCGCTACT ACTGGTTCCGTCTGTTTTGCGTCAGCCTCGTCTGGTTCCTCTACGATGTGAGTTTCTCCTCTCTCCCTATAGAAG CTCGACGTCTCACCCCTACAAAGTTCAGCACATACGCCTTTGGCATTTACGTCTCGTCAATCCTCAGCGCCATCT ACGGCGACAACGCCTCCCTCACCACCGTCTTCGGCTGGACGACCGTGATAAACACCTTTTACCTGCCAGGCACCT TGTTTGGCGCCCTCGTCAGCGACTGGCTGGGCCCCAAGTACACGCTCATCGGGGGCGTCACCGTCCAGGCCATCG TCGGCTTCATCATGGCCGCCGTCTACGACCGCATCTCACACAACGTTGCCGCCTTCGCCGTCATCTACGGCCTCT TCCTCACCCTTGGCGAGCTCGGTCCGGGCAACAACATCGGCTTACTGGCAGCTAAGACGTGCGCGACGGGCGTCC GCGGCCGCTACTATGGCATTTCCGCCGCCATCGGCAAGATTGGAGCCTTTGTCGGTTCCTACGTCTTCCCTTACA TCCAGGCTGCCGGCGGCGCCTCCGGCTCGGTCCAGTCGGCGCAGTATCCGTTCTACGTCGCGTCCAGCTTCTGCA TCCTGTCGGCCGCCATCGCCATGTGCATCCCCAACATCGGCCAGGACACCATCACGCGCGAAGACGCCGAGTTCC GGGCCTATCTCGAGGCCAAGGGGTGGGACACGTCCTTGCTGGGGCTTGCCAAGGACGACTCGCAGGCGGTGACCT ATGCCGAGGACGAGAATCAGCGGCAGGAGCCTACGAAGCAGCAGTAG |