Protein ID | Ophcf2|04608 |
Gene name | |
Location | scaffold_04:3691380..3692031 |
Strand | - |
Gene length (bp) | 651 |
Transcript length (bp) | 525 |
Coding sequence length (bp) | 525 |
Protein length (aa) | 175 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01545 | Cation_efflux | Cation efflux family | 3.4E-14 | 79 | 163 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008324 | cation transmembrane transporter activity | Yes |
GO:0006812 | cation transport | Yes |
GO:0016021 | integral component of membrane | Yes |
GO:0055085 | transmembrane transport | Yes |
GO:0051234 | establishment of localization | No |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
GO:0005215 | transporter activity | No |
GO:0003674 | molecular_function | No |
GO:0009987 | cellular process | No |
GO:0006811 | ion transport | No |
GO:0006810 | transport | No |
GO:0031224 | intrinsic component of membrane | No |
GO:0008150 | biological_process | No |
GO:0015075 | ion transmembrane transporter activity | No |
GO:0022857 | transmembrane transporter activity | No |
GO:0051179 | localization | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 72 | 94 | 22 |
2 | 104 | 123 | 19 |
3 | 144 | 166 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Fungus | Fungus in pure culture | 0.00 | 0.0 | 0.00 |
Alive | In ants, during behavior modification | 0.56 | 0.0 | 1.45 |
Dead | In ants, recently dead | 0.30 | 0.0 | 0.86 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Alive | Fungus | 1.0 | no |
Alive | Dead | 1.0 | no |
Dead | Fungus | 1.0 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|04608 MPPDDTPQPPPPTLLDPRLLLQAKSGPDALSNRQRPVRRFYSQQNRLIDQYLGAEDEERAAEDEELRLRPRVRFA VYGSFAVNGGLFVIQLYAAVKTGSLSLFATAADAFMDLISSCIMVVTSRLARRPSIYRFPVGRTRIEPVGIIVFC ALMATVAVELMVGHFLSRFVWARS* |
Coding | >Ophcf2|04608 ATGCCCCCCGACGACACGCCACAGCCACCACCTCCCACGCTCCTAGACCCACGCCTCCTCCTGCAAGCAAAGTCC GGCCCCGACGCCCTAAGCAACCGCCAACGTCCCGTCCGACGCTTCTACTCGCAGCAGAACCGGCTGATCGACCAG TACCTGGGCGCCGAGGACGAGGAGCGGGCGGCGGAGGACGAGGAGCTTCGATTGAGGCCGCGCGTGCGCTTCGCT GTTTACGGCTCGTTCGCTGTGAATGGCGGCTTGTTCGTTATACAGCTCTACGCGGCTGTCAAGACGGGGTCGTTG TCGTTGTTTGCTACGGCGGCGGATGCGTTTATGGATCTCATCTCGTCTTGTATTATGGTGGTCACCTCGCGGCTT GCGCGTCGGCCAAGCATTTATCGCTTTCCGGTGGGCCGGACGCGCATCGAGCCCGTTGGAATCATTGTATTTTGT GCCTTGATGGCGACTGTGGCTGTCGAGCTCATGGTAGGTCATTTTCTGTCTCGATTTGTCTGGGCTCGTTCTTGA |
Transcript | >Ophcf2|04608 ATGCCCCCCGACGACACGCCACAGCCACCACCTCCCACGCTCCTAGACCCACGCCTCCTCCTGCAAGCAAAGTCC GGCCCCGACGCCCTAAGCAACCGCCAACGTCCCGTCCGACGCTTCTACTCGCAGCAGAACCGGCTGATCGACCAG TACCTGGGCGCCGAGGACGAGGAGCGGGCGGCGGAGGACGAGGAGCTTCGATTGAGGCCGCGCGTGCGCTTCGCT GTTTACGGCTCGTTCGCTGTGAATGGCGGCTTGTTCGTTATACAGCTCTACGCGGCTGTCAAGACGGGGTCGTTG TCGTTGTTTGCTACGGCGGCGGATGCGTTTATGGATCTCATCTCGTCTTGTATTATGGTGGTCACCTCGCGGCTT GCGCGTCGGCCAAGCATTTATCGCTTTCCGGTGGGCCGGACGCGCATCGAGCCCGTTGGAATCATTGTATTTTGT GCCTTGATGGCGACTGTGGCTGTCGAGCTCATGGTAGGTCATTTTCTGTCTCGATTTGTCTGGGCTCGTTCTTGA |
Gene | >Ophcf2|04608 ATGCCCCCCGACGACACGCCACAGCCACCACCTCCCACGCTCCTAGACCCACGCCTCCTCCTGCAAGCAAAGTCC GGCCCCGACGCCCTAAGCAACCGCCAACGTCCCGTCCGACGCTTCTACTCGCAGCAGAACCGGCTGATCGACCAG TACCTGGGCGCCGAGGACGAGGAGCGGGCGGCGGAGGACGAGGAGCTTCGATTGAGGCCGCGCGTGCGCTTCGCT GTTTACGGCTCGTTCGCTGTGAATGGCGGCTTGTTCGTTATACAGCTCTACGCGGCTGTCAAGACGGGGTCGTTG TCGGTGGGTTATGTGGTAGTTCAAAGTGATGATTTCGCTGCTGACCTTTTTTTTCTTTTCTTTTTACTCTCTCTT GTAGTTGTTTGCTACGGCGGCGGATGCGTTTATGGATCTCATCTCGTCTTGTATTATGGTGGTCACCTCGCGGCT TGCGCGTCGGCCAAGCATTTATCGCTTTCCGGTGGTGAGTTTGGCCGTCTTGGATACGAATCATGGCTTGTTCTG ACTCTATAGGGCCGGACGCGCATCGAGCCCGTTGGAATCATTGTATTTTGTGCCTTGATGGCGACTGTGGCTGTC GAGCTCATGGTAGGTCATTTTCTGTCTCGATTTGTCTGGGCTCGTTCTTGA |