Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04608
Gene name
Locationscaffold_04:3691380..3692031
Strand-
Gene length (bp)651
Transcript length (bp)525
Coding sequence length (bp)525
Protein length (aa) 175

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01545 Cation_efflux Cation efflux family 3.4E-14 79 163

GO

GO Term Description Terminal node
GO:0008324 cation transmembrane transporter activity Yes
GO:0006812 cation transport Yes
GO:0016021 integral component of membrane Yes
GO:0055085 transmembrane transport Yes
GO:0051234 establishment of localization No
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No
GO:0005215 transporter activity No
GO:0003674 molecular_function No
GO:0009987 cellular process No
GO:0006811 ion transport No
GO:0006810 transport No
GO:0031224 intrinsic component of membrane No
GO:0008150 biological_process No
GO:0015075 ion transmembrane transporter activity No
GO:0022857 transmembrane transporter activity No
GO:0051179 localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 72 94 22
2 104 123 19
3 144 166 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 0.00 0.0 0.00
Alive In ants, during behavior modification 0.56 0.0 1.45
Dead In ants, recently dead 0.30 0.0 0.86

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 1.0 no
Alive Dead 1.0 no
Dead Fungus 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04608
MPPDDTPQPPPPTLLDPRLLLQAKSGPDALSNRQRPVRRFYSQQNRLIDQYLGAEDEERAAEDEELRLRPRVRFA
VYGSFAVNGGLFVIQLYAAVKTGSLSLFATAADAFMDLISSCIMVVTSRLARRPSIYRFPVGRTRIEPVGIIVFC
ALMATVAVELMVGHFLSRFVWARS*
Coding >Ophcf2|04608
ATGCCCCCCGACGACACGCCACAGCCACCACCTCCCACGCTCCTAGACCCACGCCTCCTCCTGCAAGCAAAGTCC
GGCCCCGACGCCCTAAGCAACCGCCAACGTCCCGTCCGACGCTTCTACTCGCAGCAGAACCGGCTGATCGACCAG
TACCTGGGCGCCGAGGACGAGGAGCGGGCGGCGGAGGACGAGGAGCTTCGATTGAGGCCGCGCGTGCGCTTCGCT
GTTTACGGCTCGTTCGCTGTGAATGGCGGCTTGTTCGTTATACAGCTCTACGCGGCTGTCAAGACGGGGTCGTTG
TCGTTGTTTGCTACGGCGGCGGATGCGTTTATGGATCTCATCTCGTCTTGTATTATGGTGGTCACCTCGCGGCTT
GCGCGTCGGCCAAGCATTTATCGCTTTCCGGTGGGCCGGACGCGCATCGAGCCCGTTGGAATCATTGTATTTTGT
GCCTTGATGGCGACTGTGGCTGTCGAGCTCATGGTAGGTCATTTTCTGTCTCGATTTGTCTGGGCTCGTTCTTGA
Transcript >Ophcf2|04608
ATGCCCCCCGACGACACGCCACAGCCACCACCTCCCACGCTCCTAGACCCACGCCTCCTCCTGCAAGCAAAGTCC
GGCCCCGACGCCCTAAGCAACCGCCAACGTCCCGTCCGACGCTTCTACTCGCAGCAGAACCGGCTGATCGACCAG
TACCTGGGCGCCGAGGACGAGGAGCGGGCGGCGGAGGACGAGGAGCTTCGATTGAGGCCGCGCGTGCGCTTCGCT
GTTTACGGCTCGTTCGCTGTGAATGGCGGCTTGTTCGTTATACAGCTCTACGCGGCTGTCAAGACGGGGTCGTTG
TCGTTGTTTGCTACGGCGGCGGATGCGTTTATGGATCTCATCTCGTCTTGTATTATGGTGGTCACCTCGCGGCTT
GCGCGTCGGCCAAGCATTTATCGCTTTCCGGTGGGCCGGACGCGCATCGAGCCCGTTGGAATCATTGTATTTTGT
GCCTTGATGGCGACTGTGGCTGTCGAGCTCATGGTAGGTCATTTTCTGTCTCGATTTGTCTGGGCTCGTTCTTGA
Gene >Ophcf2|04608
ATGCCCCCCGACGACACGCCACAGCCACCACCTCCCACGCTCCTAGACCCACGCCTCCTCCTGCAAGCAAAGTCC
GGCCCCGACGCCCTAAGCAACCGCCAACGTCCCGTCCGACGCTTCTACTCGCAGCAGAACCGGCTGATCGACCAG
TACCTGGGCGCCGAGGACGAGGAGCGGGCGGCGGAGGACGAGGAGCTTCGATTGAGGCCGCGCGTGCGCTTCGCT
GTTTACGGCTCGTTCGCTGTGAATGGCGGCTTGTTCGTTATACAGCTCTACGCGGCTGTCAAGACGGGGTCGTTG
TCGGTGGGTTATGTGGTAGTTCAAAGTGATGATTTCGCTGCTGACCTTTTTTTTCTTTTCTTTTTACTCTCTCTT
GTAGTTGTTTGCTACGGCGGCGGATGCGTTTATGGATCTCATCTCGTCTTGTATTATGGTGGTCACCTCGCGGCT
TGCGCGTCGGCCAAGCATTTATCGCTTTCCGGTGGTGAGTTTGGCCGTCTTGGATACGAATCATGGCTTGTTCTG
ACTCTATAGGGCCGGACGCGCATCGAGCCCGTTGGAATCATTGTATTTTGTGCCTTGATGGCGACTGTGGCTGTC
GAGCTCATGGTAGGTCATTTTCTGTCTCGATTTGTCTGGGCTCGTTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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