© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04603 |
| Gene name | |
| Location | scaffold_04:3683632..3684840 |
| Strand | - |
| Gene length (bp) | 1208 |
| Transcript length (bp) | 1152 |
| Coding sequence length (bp) | 1152 |
| Protein length (aa) | 384 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03403 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II | 1.0E-12 | 99 | 167 |
| PF03403 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II | 7.7E-07 | 221 | 325 |
| PF12740 | Chlorophyllase2 | Chlorophyllase enzyme | 1.3E-07 | 124 | 244 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016042 | lipid catabolic process | Yes |
| GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0009056 | catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0006629 | lipid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04603 MLSPLLLAAALVAVVRAILVPGPIGAFPVAMRTHELIDFSRVDPYASRNHTLLRRILVSVFLPLDPVQYADAKVQ QLPYMPPLTAAEYSRITQIIAPSFKGVFEKLAIEYRRLETNDPGREYATKKKSYPVVIFSPGLGASRLMYSAGAR DLASQGYIVITIDHPYDASIVEFPDGSVVRGVNFSTTAQIAVAAKVRVQDVVFLVNQLHDSDVQERLTEGFPGLV NVEKMAIYGHSLGGATAAEALRKDSRLLGGMNWDGEMQEAAASHGLAQPFIQVGVPRHRYENNSNWPAFYEKLRG PKLELMLENTTHISFTDLPLLLSTMEVPLEAQPSLEYFLGTVSGRRLRRTLTGILKASLEFLFERNVEGVRSLAE DYCGVTVF* |
| Coding | >Ophcf2|04603 ATGCTTTCGCCTCTTCTTCTCGCCGCTGCCCTCGTGGCCGTCGTCCGGGCCATCTTGGTACCAGGGCCGATTGGG GCGTTTCCTGTGGCGATGCGAACCCACGAGCTCATCGATTTCAGCCGGGTTGATCCCTATGCGTCTCGCAATCAC ACTCTCCTGAGAAGAATTCTCGTCTCCGTCTTCCTGCCTCTCGACCCGGTCCAATACGCGGATGCCAAGGTCCAG CAGCTGCCTTATATGCCACCTCTTACGGCGGCCGAGTACAGCCGAATTACCCAGATCATCGCGCCCTCGTTCAAG GGCGTTTTTGAGAAACTGGCGATTGAATATCGACGGCTGGAGACGAACGATCCGGGTCGAGAGTATGCGACGAAA AAGAAGAGCTACCCGGTTGTCATCTTCTCGCCCGGACTAGGCGCGTCCAGGTTGATGTACTCTGCCGGTGCCAGG GATCTGGCCAGTCAGGGCTACATCGTCATCACCATAGATCATCCTTACGACGCGTCCATTGTCGAATTTCCCGAC GGCTCCGTCGTTCGCGGCGTCAACTTCTCGACGACGGCTCAAATTGCCGTCGCCGCCAAGGTTCGCGTGCAAGAC GTCGTATTCCTTGTGAACCAGCTGCACGACTCCGATGTCCAAGAGCGGCTCACGGAAGGCTTTCCCGGCCTCGTC AACGTGGAAAAGATGGCCATCTACGGCCACTCGCTGGGCGGCGCGACGGCAGCCGAAGCCTTGCGGAAGGACAGC CGGCTCCTCGGCGGCATGAACTGGGACGGAGAGATGCAGGAAGCAGCGGCAAGCCACGGACTCGCTCAGCCCTTC ATCCAGGTCGGCGTCCCGAGACATCGCTACGAAAACAACTCCAACTGGCCGGCCTTTTACGAGAAGCTACGCGGA CCCAAGCTGGAGCTGATGTTGGAGAATACGACACACATTTCGTTCACGGACCTGCCGCTACTGCTGTCGACGATG GAGGTTCCGCTCGAGGCGCAGCCTTCGCTAGAGTACTTCTTGGGGACTGTCAGTGGACGGCGGCTGAGGCGGACG TTGACGGGGATCCTGAAAGCGTCGTTGGAGTTTTTGTTTGAGAGGAATGTGGAGGGCGTGAGGAGTTTGGCTGAG GATTATTGCGGGGTGACGGTTTTTTAG |
| Transcript | >Ophcf2|04603 ATGCTTTCGCCTCTTCTTCTCGCCGCTGCCCTCGTGGCCGTCGTCCGGGCCATCTTGGTACCAGGGCCGATTGGG GCGTTTCCTGTGGCGATGCGAACCCACGAGCTCATCGATTTCAGCCGGGTTGATCCCTATGCGTCTCGCAATCAC ACTCTCCTGAGAAGAATTCTCGTCTCCGTCTTCCTGCCTCTCGACCCGGTCCAATACGCGGATGCCAAGGTCCAG CAGCTGCCTTATATGCCACCTCTTACGGCGGCCGAGTACAGCCGAATTACCCAGATCATCGCGCCCTCGTTCAAG GGCGTTTTTGAGAAACTGGCGATTGAATATCGACGGCTGGAGACGAACGATCCGGGTCGAGAGTATGCGACGAAA AAGAAGAGCTACCCGGTTGTCATCTTCTCGCCCGGACTAGGCGCGTCCAGGTTGATGTACTCTGCCGGTGCCAGG GATCTGGCCAGTCAGGGCTACATCGTCATCACCATAGATCATCCTTACGACGCGTCCATTGTCGAATTTCCCGAC GGCTCCGTCGTTCGCGGCGTCAACTTCTCGACGACGGCTCAAATTGCCGTCGCCGCCAAGGTTCGCGTGCAAGAC GTCGTATTCCTTGTGAACCAGCTGCACGACTCCGATGTCCAAGAGCGGCTCACGGAAGGCTTTCCCGGCCTCGTC AACGTGGAAAAGATGGCCATCTACGGCCACTCGCTGGGCGGCGCGACGGCAGCCGAAGCCTTGCGGAAGGACAGC CGGCTCCTCGGCGGCATGAACTGGGACGGAGAGATGCAGGAAGCAGCGGCAAGCCACGGACTCGCTCAGCCCTTC ATCCAGGTCGGCGTCCCGAGACATCGCTACGAAAACAACTCCAACTGGCCGGCCTTTTACGAGAAGCTACGCGGA CCCAAGCTGGAGCTGATGTTGGAGAATACGACACACATTTCGTTCACGGACCTGCCGCTACTGCTGTCGACGATG GAGGTTCCGCTCGAGGCGCAGCCTTCGCTAGAGTACTTCTTGGGGACTGTCAGTGGACGGCGGCTGAGGCGGACG TTGACGGGGATCCTGAAAGCGTCGTTGGAGTTTTTGTTTGAGAGGAATGTGGAGGGCGTGAGGAGTTTGGCTGAG GATTATTGCGGGGTGACGGTTTTTTAG |
| Gene | >Ophcf2|04603 ATGCTTTCGCCTCTTCTTCTCGCCGCTGCCCTCGTGGCCGTCGTCCGGGCCATCTTGGTACCAGGGCCGATTGGG GCGTTTCCTGTGGCGATGCGAACCCACGAGCTCATCGATTTCAGCCGGGTTGATCCCTATGCGTCTCGCAATCAC ACTCTCCTGAGAAGAATTCTCGTCTCCGTCTTCCTGCCTCTCGACCCGGTCCAATACGCGGATGCCAAGGTCCAG CAGCTGCCTTATATGCCACCTCTTACGGCGGCCGAGTACAGCCGAATTACCCAGATCATCGCGCCCTCGTTCAAG GGCGTTTTTGAGAAACTGGCGATTGAATATCGACGGCTGGAGACGAACGATCCGGGTCGAGAGTATGCGACGAAA AAGAAGAGCTACCCGGTTGTCATCTTCTCGCCCGGACTAGGCGCGTCCAGGTTGATGTACTCTGCCGGTGCCAGG GATCTGGCCAGTCAGGGCTACATCGTCATCACCATAGATCATCCTTACGACGCGTCCATTGTCGAATTTCCCGAC GGCTCCGTCGTTCGCGGCGTCAACTTCTCGACGACGGCTCAAATTGCCGTCGCCGCCAAGGTTGGGCGTGCTCAC GCGAGTGGATTGATGTCGACGAAGCGGCTGACGGCGTGCAGGTTCGCGTGCAAGACGTCGTATTCCTTGTGAACC AGCTGCACGACTCCGATGTCCAAGAGCGGCTCACGGAAGGCTTTCCCGGCCTCGTCAACGTGGAAAAGATGGCCA TCTACGGCCACTCGCTGGGCGGCGCGACGGCAGCCGAAGCCTTGCGGAAGGACAGCCGGCTCCTCGGCGGCATGA ACTGGGACGGAGAGATGCAGGAAGCAGCGGCAAGCCACGGACTCGCTCAGCCCTTCATCCAGGTCGGCGTCCCGA GACATCGCTACGAAAACAACTCCAACTGGCCGGCCTTTTACGAGAAGCTACGCGGACCCAAGCTGGAGCTGATGT TGGAGAATACGACACACATTTCGTTCACGGACCTGCCGCTACTGCTGTCGACGATGGAGGTTCCGCTCGAGGCGC AGCCTTCGCTAGAGTACTTCTTGGGGACTGTCAGTGGACGGCGGCTGAGGCGGACGTTGACGGGGATCCTGAAAG CGTCGTTGGAGTTTTTGTTTGAGAGGAATGTGGAGGGCGTGAGGAGTTTGGCTGAGGATTATTGCGGGGTGACGG TTTTTTAG |