© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|04567 |
| Gene name | |
| Location | scaffold_04:3600818..3601949 |
| Strand | + |
| Gene length (bp) | 1131 |
| Transcript length (bp) | 765 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 4.7E-21 | 188 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 53 | 75 | 22 |
| 3 | 172 | 189 | 17 |
| 4 | 228 | 250 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 127.51 | 71.89 | 183.12 |
| Alive | In ants, during behavior modification | 149.89 | 85.85 | 213.93 |
| Dead | In ants, recently dead | 154.83 | 88.82 | 220.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.439617 | no |
| Alive | Dead | 0.874698 | no |
| Dead | Fungus | 0.335440 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04567 MSWKLSWRRFWCYFNSQYVYGRVPLVHAIVFLVEMGLIARLTARFNAQYEERPLITMMVTNALLGGIADTVAQGI SAVRQRTAGKAGVKDEDLDMEMPEIGRKGTFLDRDLLPESKAPPPPFDLERLTRFAAYGFCVAPLQFKWFRFLER AFPMTKTSAFGPAMKRVVFDQFVYAPFGVGLFFVAMTVAEGGGKRAVSNKLRDMYVPTLKANYVVWPAVQMVNFR LMPVQFQLPFVSTIGIAWTAYLSLTNASS* |
| Coding | >Ophcf2|04567 ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCCCGCTG GTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCCCAGTATGAA GAACGACCGCTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCAGGGCATC TCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCCAGAAATC GGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGACTTGGAA CGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCTCGAACGG GCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGTGTATGCA CCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAGCAACAAG CTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAACTTTCGC CTGATGCCGGTGCAGTTCCAGCTGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACC AACGCATCTTCCTAG |
| Transcript | >Ophcf2|04567 ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCCCGCTG GTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCCCAGTATGAA GAACGACCGCTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCAGGGCATC TCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCCAGAAATC GGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGACTTGGAA CGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCTCGAACGG GCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGTGTATGCA CCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAGCAACAAG CTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAACTTTCGC CTGATGCCGGTGCAGTTCCAGCTGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACC AACGCATCTTCCTAG |
| Gene | >Ophcf2|04567 ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCGTACGT GTCGTCCTCAGTTGCTCCACTACTAAGCCTTTCTCCTGATTACCTACGTCGTCGCTTTTTCTTTTTTCCTTTTCT TTTTTCTTCTTCTTGACTTTCCTTACCTCGACCATTGCCACCGTCGCAACCTCGAGCATCCACTGACGACACGTA CAGCCGCTGGTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCC CAGTATGAAGAACGACCGCGTATGTTCTCACCCACCGCTCCGACATTGCCGCCTGCGAAGCCATGACCTTTTGCC CCTTTACCTCGCAAGCGACAGAGACCCGCACCCGCCCAACAATCCCATAACGACGCATTCGAAAGAGCTGAACTG ACTCCCGTTATCCACAGTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCA GGGCATCTCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCC AGAAATCGGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGA CTTGGAACGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCT CGAACGGGCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGT GTATGCACCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAG CAACAAGCTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAA CTTTCGCCTGATGCCGGTGCAGTTCCAGCTGGTATGTCGTCATTTCCAAGACGTCTTTGTCTGGCTTTTGACTTT GCTAACCCGGAACAGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACCAACGCATCT TCCTAG |