Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04567
Gene name
Locationscaffold_04:3600818..3601949
Strand+
Gene length (bp)1131
Transcript length (bp)765
Coding sequence length (bp)765
Protein length (aa) 255

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 4.7E-21 188 248

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22
2 53 75 22
3 172 189 17
4 228 250 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04567
MSWKLSWRRFWCYFNSQYVYGRVPLVHAIVFLVEMGLIARLTARFNAQYEERPLITMMVTNALLGGIADTVAQGI
SAVRQRTAGKAGVKDEDLDMEMPEIGRKGTFLDRDLLPESKAPPPPFDLERLTRFAAYGFCVAPLQFKWFRFLER
AFPMTKTSAFGPAMKRVVFDQFVYAPFGVGLFFVAMTVAEGGGKRAVSNKLRDMYVPTLKANYVVWPAVQMVNFR
LMPVQFQLPFVSTIGIAWTAYLSLTNASS*
Coding >Ophcf2|04567
ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCCCGCTG
GTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCCCAGTATGAA
GAACGACCGCTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCAGGGCATC
TCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCCAGAAATC
GGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGACTTGGAA
CGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCTCGAACGG
GCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGTGTATGCA
CCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAGCAACAAG
CTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAACTTTCGC
CTGATGCCGGTGCAGTTCCAGCTGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACC
AACGCATCTTCCTAG
Transcript >Ophcf2|04567
ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCCCGCTG
GTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCCCAGTATGAA
GAACGACCGCTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCAGGGCATC
TCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCCAGAAATC
GGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGACTTGGAA
CGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCTCGAACGG
GCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGTGTATGCA
CCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAGCAACAAG
CTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAACTTTCGC
CTGATGCCGGTGCAGTTCCAGCTGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACC
AACGCATCTTCCTAG
Gene >Ophcf2|04567
ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCGTACGT
GTCGTCCTCAGTTGCTCCACTACTAAGCCTTTCTCCTGATTACCTACGTCGTCGCTTTTTCTTTTTTCCTTTTCT
TTTTTCTTCTTCTTGACTTTCCTTACCTCGACCATTGCCACCGTCGCAACCTCGAGCATCCACTGACGACACGTA
CAGCCGCTGGTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCC
CAGTATGAAGAACGACCGCGTATGTTCTCACCCACCGCTCCGACATTGCCGCCTGCGAAGCCATGACCTTTTGCC
CCTTTACCTCGCAAGCGACAGAGACCCGCACCCGCCCAACAATCCCATAACGACGCATTCGAAAGAGCTGAACTG
ACTCCCGTTATCCACAGTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCA
GGGCATCTCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCC
AGAAATCGGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGA
CTTGGAACGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCT
CGAACGGGCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGT
GTATGCACCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAG
CAACAAGCTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAA
CTTTCGCCTGATGCCGGTGCAGTTCCAGCTGGTATGTCGTCATTTCCAAGACGTCTTTGTCTGGCTTTTGACTTT
GCTAACCCGGAACAGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACCAACGCATCT
TCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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