© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04567 |
| Gene name | |
| Location | scaffold_04:3600818..3601949 |
| Strand | + |
| Gene length (bp) | 1131 |
| Transcript length (bp) | 765 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 4.7E-21 | 188 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion|Peroxisome | Peroxisomal targeting signal | 0.0859 | 0.0824 | 0.024 | 0.069 | 0.861 | 0.2772 | 0.4264 | 0.1484 | 0.2339 | 0.8695 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 53 | 75 | 22 |
| 3 | 172 | 189 | 17 |
| 4 | 228 | 250 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4353 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04567 MSWKLSWRRFWCYFNSQYVYGRVPLVHAIVFLVEMGLIARLTARFNAQYEERPLITMMVTNALLGGIADTVAQGI SAVRQRTAGKAGVKDEDLDMEMPEIGRKGTFLDRDLLPESKAPPPPFDLERLTRFAAYGFCVAPLQFKWFRFLER AFPMTKTSAFGPAMKRVVFDQFVYAPFGVGLFFVAMTVAEGGGKRAVSNKLRDMYVPTLKANYVVWPAVQMVNFR LMPVQFQLPFVSTIGIAWTAYLSLTNASS* |
| Coding | >Ophcf2|04567 ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCCCGCTG GTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCCCAGTATGAA GAACGACCGCTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCAGGGCATC TCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCCAGAAATC GGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGACTTGGAA CGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCTCGAACGG GCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGTGTATGCA CCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAGCAACAAG CTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAACTTTCGC CTGATGCCGGTGCAGTTCCAGCTGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACC AACGCATCTTCCTAG |
| Transcript | >Ophcf2|04567 ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCCCGCTG GTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCCCAGTATGAA GAACGACCGCTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCAGGGCATC TCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCCAGAAATC GGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGACTTGGAA CGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCTCGAACGG GCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGTGTATGCA CCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAGCAACAAG CTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAACTTTCGC CTGATGCCGGTGCAGTTCCAGCTGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACC AACGCATCTTCCTAG |
| Gene | >Ophcf2|04567 ATGTCCTGGAAACTGTCGTGGCGGCGCTTCTGGTGCTACTTCAACAGCCAATATGTCTACGGGCGCGTCGTACGT GTCGTCCTCAGTTGCTCCACTACTAAGCCTTTCTCCTGATTACCTACGTCGTCGCTTTTTCTTTTTTCCTTTTCT TTTTTCTTCTTCTTGACTTTCCTTACCTCGACCATTGCCACCGTCGCAACCTCGAGCATCCACTGACGACACGTA CAGCCGCTGGTGCATGCTATAGTCTTCCTCGTTGAAATGGGTCTCATCGCGCGTCTGACGGCTCGGTTCAATGCC CAGTATGAAGAACGACCGCGTATGTTCTCACCCACCGCTCCGACATTGCCGCCTGCGAAGCCATGACCTTTTGCC CCTTTACCTCGCAAGCGACAGAGACCCGCACCCGCCCAACAATCCCATAACGACGCATTCGAAAGAGCTGAACTG ACTCCCGTTATCCACAGTGATAACCATGATGGTCACCAACGCCCTTCTCGGCGGCATAGCCGACACCGTCGCCCA GGGCATCTCCGCCGTACGCCAACGCACCGCCGGCAAGGCAGGCGTCAAAGACGAAGACTTGGACATGGAGATGCC AGAAATCGGCCGCAAAGGCACCTTCCTTGATCGCGACTTGCTGCCCGAGTCCAAGGCGCCGCCCCCGCCCTTCGA CTTGGAACGGCTGACGCGCTTCGCCGCCTATGGCTTCTGCGTTGCGCCCTTGCAGTTCAAGTGGTTCCGATTCCT CGAACGGGCCTTTCCCATGACCAAGACGAGTGCTTTCGGTCCGGCTATGAAGCGCGTCGTCTTCGACCAGTTCGT GTATGCACCCTTTGGTGTCGGTCTCTTCTTCGTCGCCATGACTGTCGCCGAGGGAGGCGGCAAGCGTGCCGTCAG CAACAAGCTGAGGGACATGTACGTCCCGACGCTCAAGGCCAACTACGTCGTCTGGCCCGCCGTGCAGATGGTAAA CTTTCGCCTGATGCCGGTGCAGTTCCAGCTGGTATGTCGTCATTTCCAAGACGTCTTTGTCTGGCTTTTGACTTT GCTAACCCGGAACAGCCCTTCGTGTCAACCATCGGTATCGCATGGACAGCCTACCTCTCCCTCACCAACGCATCT TCCTAG |