© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04542 |
| Gene name | |
| Location | scaffold_04:3529761..3531630 |
| Strand | + |
| Gene length (bp) | 1869 |
| Transcript length (bp) | 1539 |
| Coding sequence length (bp) | 1539 |
| Protein length (aa) | 513 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 1.4E-60 | 89 | 478 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0043169 | cation binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| 2 | 40 | 62 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04542 MLHLPAVSPGRIALAFPCALIIAWFVFRIRTEIRLRKNPGVRGPIIASNPFSGIIFFWEAAYMQATNQLIPFYSN IFTRSSNSTPSTHTVELPFATRRIIITRDPEHIKTVLTSKFTSFGKGQLFHDSWSPFLGDSIFTTDGALWQRNRA LLRPMFTRERVRDLDIFDRWTNVFLDKLPACGETVDVCALFYRVTLDVTTDFLLGHGVGSLENPDGEFTRAFTEV QRKQMILTILHAFRWLIPQRSYTSSIRILERFVDPFIRSALKLTPDELANLSKSDRDFTFLHNIVLLSRDPKTIR DQIMAVLIAGRDTTAATLSWAVYELSRRPDVWTKLRASVLQRVGNQRMPTYDDLKNLNYLTHTINETLRLWPAVP YNIRGCVEHSTLPGQPGEPDIATLPDDIIVYSTLAMHRRPDLYPPISPTFADPAIFDPDRWEQWTPKPWQYVPFN GGPRICIGQNFAMTEMGFILVRLLQKFDRLEYRGDWSAQYHKTDIVGCPGQGVPVAFYEPKS* |
| Coding | >Ophcf2|04542 ATGCTTCATCTGCCGGCAGTAAGCCCCGGCAGGATCGCCCTGGCGTTCCCCTGCGCCCTCATCATCGCCTGGTTC GTCTTCCGCATCCGAACCGAGATTCGCCTCCGCAAGAACCCCGGCGTCAGGGGCCCCATCATCGCCAGCAACCCC TTCAGCGGCATCATATTCTTCTGGGAAGCTGCCTACATGCAAGCAACGAACCAGCTCATCCCCTTCTACAGCAAC ATCTTCACTCGCTCCTCAAACTCAACCCCATCAACCCACACCGTCGAACTCCCCTTCGCCACGCGCCGCATCATC ATCACCCGCGATCCAGAGCACATCAAGACGGTCCTGACCAGCAAGTTCACCAGCTTCGGAAAAGGCCAGCTCTTC CACGACTCATGGAGCCCCTTCCTCGGCGACAGCATCTTCACCACCGACGGAGCCCTTTGGCAACGGAACCGCGCC CTGCTGAGGCCCATGTTCACCCGCGAGCGCGTCCGCGATCTCGACATCTTTGACCGCTGGACCAACGTTTTCCTC GACAAGCTTCCTGCTTGTGGTGAGACGGTCGATGTCTGTGCCCTGTTTTACCGCGTGACGCTCGACGTTACCACC GACTTTCTTCTCGGTCACGGTGTTGGCTCGCTCGAGAATCCGGATGGCGAGTTTACGCGTGCCTTTACCGAGGTG CAGCGGAAGCAGATGATTCTGACAATCCTGCACGCCTTCCGCTGGCTCATCCCCCAACGAAGCTACACAAGCAGC ATCCGCATCCTCGAACGCTTCGTCGACCCCTTCATCCGCTCCGCCCTCAAACTCACCCCCGACGAACTCGCCAAC CTCTCCAAGTCAGACCGCGACTTCACCTTCCTACACAACATCGTCCTCCTCTCCCGCGACCCCAAAACGATCCGC GATCAGATCATGGCCGTCCTGATCGCCGGTCGTGACACCACCGCCGCCACCCTCTCGTGGGCCGTCTACGAACTC TCTCGTCGTCCCGATGTCTGGACGAAGTTGCGCGCCAGCGTCCTACAGCGAGTTGGAAACCAGCGCATGCCGACG TACGATGACCTCAAGAACCTCAACTACCTCACCCACACCATCAACGAGACTCTACGCCTATGGCCCGCCGTTCCT TACAACATCCGCGGCTGCGTCGAACACTCTACCCTCCCCGGCCAACCAGGCGAACCCGACATCGCCACCCTCCCC GACGACATCATCGTCTACAGCACCCTCGCCATGCACCGCCGTCCAGATCTCTACCCCCCCATCTCTCCCACCTTC GCCGACCCAGCAATCTTCGACCCAGACAGATGGGAACAATGGACGCCCAAGCCGTGGCAGTACGTGCCCTTTAAC GGCGGGCCGCGCATCTGCATCGGCCAGAACTTTGCCATGACCGAGATGGGCTTTATACTCGTCCGTCTGCTTCAA AAGTTCGATAGGCTGGAGTACCGGGGCGACTGGTCGGCCCAGTACCACAAGACAGACATCGTCGGCTGTCCAGGC CAGGGCGTTCCCGTCGCCTTTTACGAGCCCAAGAGCTGA |
| Transcript | >Ophcf2|04542 ATGCTTCATCTGCCGGCAGTAAGCCCCGGCAGGATCGCCCTGGCGTTCCCCTGCGCCCTCATCATCGCCTGGTTC GTCTTCCGCATCCGAACCGAGATTCGCCTCCGCAAGAACCCCGGCGTCAGGGGCCCCATCATCGCCAGCAACCCC TTCAGCGGCATCATATTCTTCTGGGAAGCTGCCTACATGCAAGCAACGAACCAGCTCATCCCCTTCTACAGCAAC ATCTTCACTCGCTCCTCAAACTCAACCCCATCAACCCACACCGTCGAACTCCCCTTCGCCACGCGCCGCATCATC ATCACCCGCGATCCAGAGCACATCAAGACGGTCCTGACCAGCAAGTTCACCAGCTTCGGAAAAGGCCAGCTCTTC CACGACTCATGGAGCCCCTTCCTCGGCGACAGCATCTTCACCACCGACGGAGCCCTTTGGCAACGGAACCGCGCC CTGCTGAGGCCCATGTTCACCCGCGAGCGCGTCCGCGATCTCGACATCTTTGACCGCTGGACCAACGTTTTCCTC GACAAGCTTCCTGCTTGTGGTGAGACGGTCGATGTCTGTGCCCTGTTTTACCGCGTGACGCTCGACGTTACCACC GACTTTCTTCTCGGTCACGGTGTTGGCTCGCTCGAGAATCCGGATGGCGAGTTTACGCGTGCCTTTACCGAGGTG CAGCGGAAGCAGATGATTCTGACAATCCTGCACGCCTTCCGCTGGCTCATCCCCCAACGAAGCTACACAAGCAGC ATCCGCATCCTCGAACGCTTCGTCGACCCCTTCATCCGCTCCGCCCTCAAACTCACCCCCGACGAACTCGCCAAC CTCTCCAAGTCAGACCGCGACTTCACCTTCCTACACAACATCGTCCTCCTCTCCCGCGACCCCAAAACGATCCGC GATCAGATCATGGCCGTCCTGATCGCCGGTCGTGACACCACCGCCGCCACCCTCTCGTGGGCCGTCTACGAACTC TCTCGTCGTCCCGATGTCTGGACGAAGTTGCGCGCCAGCGTCCTACAGCGAGTTGGAAACCAGCGCATGCCGACG TACGATGACCTCAAGAACCTCAACTACCTCACCCACACCATCAACGAGACTCTACGCCTATGGCCCGCCGTTCCT TACAACATCCGCGGCTGCGTCGAACACTCTACCCTCCCCGGCCAACCAGGCGAACCCGACATCGCCACCCTCCCC GACGACATCATCGTCTACAGCACCCTCGCCATGCACCGCCGTCCAGATCTCTACCCCCCCATCTCTCCCACCTTC GCCGACCCAGCAATCTTCGACCCAGACAGATGGGAACAATGGACGCCCAAGCCGTGGCAGTACGTGCCCTTTAAC GGCGGGCCGCGCATCTGCATCGGCCAGAACTTTGCCATGACCGAGATGGGCTTTATACTCGTCCGTCTGCTTCAA AAGTTCGATAGGCTGGAGTACCGGGGCGACTGGTCGGCCCAGTACCACAAGACAGACATCGTCGGCTGTCCAGGC CAGGGCGTTCCCGTCGCCTTTTACGAGCCCAAGAGCTGA |
| Gene | >Ophcf2|04542 ATGCTTCATCTGCCGGCAGTAAGCCCCGGCAGGATCGCCCTGGCGTTCCCCTGCGCCCTCATCATCGCCTGGTTC GTCTTCCGCATCCGAACCGAGATTCGCCTCCGCAAGAACCCCGGCGTCAGGGGCCCCATCATCGCCAGCAACCCC TTCAGCGGTAAGTCTTTCCTTTCCCCCCCCCCCAACAGATGTTCATAAGTCACCAACTAACAAACCTTTCAAAGG CATCATATTCTTCTGGGAAGCTGCCTACATGCAAGCAACGAACCAGCTCATCCCCTTCTACAGCAACATCTTCAC TCGCTCCTCAAACTCAACCCCATCAACCCACACCGTCGAACTCCCCTTCGCCACGCGCCGCATCATCATCACCCG CGATCCAGAGCACATCAAGACGGTCCTGACCAGCAAGTTCACCAGCTTCGGAAAAGGCCAGCTCTTCCACGACTC ATGGAGCCCCTTCCTCGGCGACAGCATCTTCACCACCGACGGAGCCCTTTGGCAACGGAACCGCGCCCTGCTGAG GCCCATGTTCACCCGCGAGCGCGTCCGCGATCTCGACATCTTTGACCGCTGGACCAACGTTTTCCTCGACAAGCT TCCTGCTTGTGGTGAGACGGTCGATGTCTGTGCCCTGTTTTACCGCGTGACGCTCGACGTTACCACCGACTTTCT TCTCGGTCACGGTGTTGGCTCGCTCGAGAATCCGGATGGCGAGTTTACGCGTGCCTTTACCGAGGTGCAGCGGAA GCAGATGATTCTGACAATCCTGCAGTGAGTTGTTTTCCTTTCTCGCCATCTCGTTGACTGTTGAATCCCCCTATC GTTGACCCGAGTTGACCCCCTTAACCGCTTCCACCTCTCCCAACTTGCACAGTCCCCCCCCCCCCATCTCAACCT TCACAACTCAAAGACCTCCCGCTGACCAAACCCAGCGCCTTCCGCTGGCTCATCCCCCAACGAAGCTACACAAGC AGCATCCGCATCCTCGAACGCTTCGTCGACCCCTTCATCCGCTCCGCCCTCAAACTCACCCCCGACGAACTCGCC AACCTCTCCAAGTCAGACCGCGACTTCACCTTCCTACACAACATCGTCCTCCTCTCCCGCGACCCCAAAACGATC CGCGATCAGATCATGGCCGTCCTGATCGCCGGTCGTGACACCACCGCCGCCACCCTCTCGTGGGCCGTCTACGAA CTCTCTCGTCGTCCCGATGTCTGGACGAAGTTGCGCGCCAGCGTCCTACAGCGAGTTGGAAACCAGCGCATGCCG ACGTACGATGACCTCAAGAACCTCAACTACCTCACCCACACCATCAACGAGACTCTACGCCTATGGCCCGCCGTT CCTTACAACATCCGCGGCTGCGGTGAGTCTTGTCCCCGTCTGCCTCTTCTTCACCCGCTCAATCTCCCCAGTCGA ACACTCTACCCTCCCCGGCCAACCAGGCGAACCCGACATCGCCACCCTCCCCGACGACATCATCGTCTACAGCAC CCTCGCCATGCACCGCCGTCCAGATCTCTACCCCCCCATCTCTCCCACCTTCGCCGACCCAGCAATCTTCGACCC AGACAGATGGGAACAATGGACGCCCAAGCCGTGGCAGTACGTGCCCTTTAACGGCGGGCCGCGCATCTGCATCGG CCAGAACTTTGCCATGACCGAGATGGGCTTTATACGTGAGTGAGGCTTGTCATTAGACTGTCAGAGTAATCGAAT TAACACGCTATAGTCGTCCGTCTGCTTCAAAAGTTCGATAGGCTGGAGTACCGGGGCGACTGGTCGGCCCAGTAC CACAAGACAGACATCGTCGGCTGTCCAGGCCAGGGCGTTCCCGTCGCCTTTTACGAGCCCAAGAGCTGA |