Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04513
Gene name
Location	scaffold_04:3455058..3457168
Strand	-
Gene length (bp)	2110
Transcript length (bp)	2052
Coding sequence length (bp)	2052
Protein length (aa)	684

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04791	LMBR1	LMBR1-like membrane protein	2.9E-103	14	509

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Endoplasmic reticulum	Signal peptide\|Transmembrane domain	0.0968	0.1986	0.0349	0.391	0.1108	0.0155	0.728	0.3362	0.5984	0.0287

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	10	32	22
2	43	65	22
3	89	111	22
4	132	154	22
5	164	186	22
6	352	374	22
7	397	419	22
8	440	462	22
9	492	509	17

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	33.49	18.84	48.15
Alive	In ants, during behavior modification	110.15	55.56	164.74
Dead	In ants, recently dead	62.27	35.03	89.52

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.000238	yes
Alive	Dead	0.000454	yes
Dead	Fungus	0.000851	yes

Orthologs

Orthofinder run ID	4
Orthogroup	3310
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|7171
Ophiocordyceps australis map64 (Brazil)	OphauB2\|774
Ophiocordyceps camponoti-floridani	Ophcf2\|04513 (this protein)
Ophiocordyceps camponoti-rufipedis	Ophun1\|5638
Ophiocordyceps kimflemingae	Ophio5\|188
Ophiocordyceps subramaniannii	Hirsu2\|610

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04513 MPHATSAATPVGSIVFCLLALLVISLGVLLMLRHYLPLRSTPAFYLVPIFFALWLPSIVVILVPVDLASSAATDD DATKGIWLPQRVILVSWRITYWLTFALTWFILPILAEYSDAGYRDSDDKLRYSLRQNAQFYAIFVLAGLAGFIYT AVVYKLDFASLKAFVMAASYCWVLVFAIYLMGHGLVSIPRRLIRGASISGSLRRLQAMAPKVHDQMEDSLVALEE VEEEVLEVRRRKVSSCVEFQDWIEELASLIPNQPPSTTMEPASRTSVPVVMTQKYLADLTRRLTRGRHARSRRLD EWNCMKQEASRMQAILNSAASKSLDFGGSSKSILTPYTRYLYYYHVAPRMRLVLGGLLAVASVCILWSELIRFAF PKLSIIRLSVIHHWVGGKAQVGFAGQTISCLYICYMCAAALVSVTEVKAWRGRALVKRNTAYESAFWYSTQVAKL CIPLSYNYVTFLTPDVYKKTTFYRFLGEQIESTAPGRWFDDLFPIILLFPVVATLFGLYGRAKRLLFGIDMVDDD DGDDPFGYGTYSWREGQRLLEQDVEGNEASRRQQDATMRLAAALGSRSAPGSVSAAGTTTGGGSFGGPRSTSPKP RLPPRQRFSETEPEDDNILQILGHRMRNTIDTMEPPRWLQEIGEGIKKTDLFPGDGRVGDVDFRRWFGGGGGGGG GGGGRIRL*
Coding	>Ophcf2\|04513 ATGCCGCACGCCACCAGCGCCGCGACGCCTGTCGGCTCCATCGTCTTTTGTCTCTTGGCGCTGCTCGTCATCTCC CTCGGGGTCCTGCTGATGCTACGGCATTACCTTCCGCTCCGCTCGACACCGGCTTTCTATCTTGTTCCCATATTC TTTGCCTTGTGGCTTCCATCGATCGTCGTTATCCTCGTTCCTGTGGACCTCGCGTCGAGCGCGGCAACCGACGAT GATGCTACAAAAGGCATATGGCTTCCTCAACGTGTTATCCTAGTGTCATGGAGGATTACGTACTGGCTGACGTTT GCCCTGACCTGGTTTATTCTTCCCATTCTTGCCGAGTACTCCGATGCTGGTTATCGCGATTCCGACGACAAGCTG AGATACTCGCTGCGACAGAATGCCCAGTTCTACGCAATCTTCGTCCTCGCGGGGCTCGCCGGCTTCATCTACACG GCAGTCGTCTACAAGCTCGACTTTGCGTCGCTCAAAGCCTTTGTCATGGCCGCCTCTTACTGCTGGGTCCTCGTC TTTGCCATCTACCTCATGGGCCACGGGCTGGTATCGATCCCGAGACGCCTGATCCGCGGCGCCAGTATCAGCGGC AGCTTACGACGATTACAAGCCATGGCACCCAAGGTTCACGATCAGATGGAAGACTCGCTCGTCGCGCTGGAGGAG GTAGAGGAGGAGGTCCTCGAGGTCCGCCGGCGCAAGGTCAGCAGCTGTGTGGAGTTTCAAGACTGGATAGAGGAG CTGGCCAGTCTCATCCCCAACCAACCGCCATCGACGACCATGGAGCCCGCAAGCCGAACCTCGGTTCCCGTCGTC ATGACGCAGAAATATCTGGCTGATCTCACAAGACGACTCACTCGCGGGCGTCACGCGAGGTCTCGACGCCTAGAC GAGTGGAACTGCATGAAACAAGAGGCATCAAGAATGCAAGCCATCCTCAACTCGGCGGCCTCCAAGAGCCTCGAT TTTGGCGGTTCGTCCAAGAGCATACTGACGCCCTACACCCGTTACCTGTACTATTATCACGTCGCTCCTCGCATG CGTCTGGTCCTAGGCGGTCTGCTGGCGGTGGCCTCGGTCTGCATCCTGTGGTCAGAGCTGATCAGATTTGCGTTT CCGAAGCTATCCATCATCCGCCTCAGCGTCATCCACCACTGGGTAGGCGGCAAGGCACAGGTAGGATTCGCGGGC CAGACGATATCGTGTCTATACATCTGCTACATGTGTGCCGCCGCGCTTGTGTCGGTAACCGAGGTCAAGGCCTGG CGAGGACGGGCTCTGGTGAAGCGGAATACGGCATACGAGTCGGCGTTTTGGTACTCGACTCAAGTGGCCAAGCTC TGCATCCCTCTCTCTTACAACTACGTGACGTTCCTCACGCCCGACGTCTACAAGAAGACGACGTTTTACCGATTC CTCGGCGAGCAGATTGAGTCGACGGCACCGGGTCGCTGGTTCGACGACTTGTTTCCTATCATTCTCCTTTTCCCT GTGGTGGCGACGCTATTCGGGCTGTACGGCAGGGCCAAACGTCTCTTGTTCGGCATCGACATGGTTGACGACGAT GACGGTGATGATCCGTTCGGCTACGGCACTTACTCCTGGCGTGAGGGCCAGCGACTGCTAGAGCAAGACGTCGAG GGCAACGAGGCGTCCCGACGACAACAAGACGCGACGATGAGGCTCGCCGCAGCCCTCGGCAGCCGATCAGCGCCG GGCTCCGTGTCCGCAGCGGGGACGACAACCGGAGGCGGCAGCTTCGGAGGTCCCCGATCGACGTCGCCGAAGCCG AGGCTGCCACCACGACAGCGATTCTCGGAGACGGAGCCCGAGGATGATAATATCCTGCAGATTCTCGGGCATCGG ATGAGGAACACGATTGATACGATGGAGCCGCCGCGGTGGTTGCAGGAGATTGGCGAGGGGATCAAGAAAACGGAT CTGTTTCCTGGGGATGGACGCGTTGGTGACGTTGATTTCCGGCGCTGGTTTGGGGGGGGAGGCGGAGGCGGAGGC GGAGGCGGAGGACGGATCCGTCTGTAG
Transcript	>Ophcf2\|04513 ATGCCGCACGCCACCAGCGCCGCGACGCCTGTCGGCTCCATCGTCTTTTGTCTCTTGGCGCTGCTCGTCATCTCC CTCGGGGTCCTGCTGATGCTACGGCATTACCTTCCGCTCCGCTCGACACCGGCTTTCTATCTTGTTCCCATATTC TTTGCCTTGTGGCTTCCATCGATCGTCGTTATCCTCGTTCCTGTGGACCTCGCGTCGAGCGCGGCAACCGACGAT GATGCTACAAAAGGCATATGGCTTCCTCAACGTGTTATCCTAGTGTCATGGAGGATTACGTACTGGCTGACGTTT GCCCTGACCTGGTTTATTCTTCCCATTCTTGCCGAGTACTCCGATGCTGGTTATCGCGATTCCGACGACAAGCTG AGATACTCGCTGCGACAGAATGCCCAGTTCTACGCAATCTTCGTCCTCGCGGGGCTCGCCGGCTTCATCTACACG GCAGTCGTCTACAAGCTCGACTTTGCGTCGCTCAAAGCCTTTGTCATGGCCGCCTCTTACTGCTGGGTCCTCGTC TTTGCCATCTACCTCATGGGCCACGGGCTGGTATCGATCCCGAGACGCCTGATCCGCGGCGCCAGTATCAGCGGC AGCTTACGACGATTACAAGCCATGGCACCCAAGGTTCACGATCAGATGGAAGACTCGCTCGTCGCGCTGGAGGAG GTAGAGGAGGAGGTCCTCGAGGTCCGCCGGCGCAAGGTCAGCAGCTGTGTGGAGTTTCAAGACTGGATAGAGGAG CTGGCCAGTCTCATCCCCAACCAACCGCCATCGACGACCATGGAGCCCGCAAGCCGAACCTCGGTTCCCGTCGTC ATGACGCAGAAATATCTGGCTGATCTCACAAGACGACTCACTCGCGGGCGTCACGCGAGGTCTCGACGCCTAGAC GAGTGGAACTGCATGAAACAAGAGGCATCAAGAATGCAAGCCATCCTCAACTCGGCGGCCTCCAAGAGCCTCGAT TTTGGCGGTTCGTCCAAGAGCATACTGACGCCCTACACCCGTTACCTGTACTATTATCACGTCGCTCCTCGCATG CGTCTGGTCCTAGGCGGTCTGCTGGCGGTGGCCTCGGTCTGCATCCTGTGGTCAGAGCTGATCAGATTTGCGTTT CCGAAGCTATCCATCATCCGCCTCAGCGTCATCCACCACTGGGTAGGCGGCAAGGCACAGGTAGGATTCGCGGGC CAGACGATATCGTGTCTATACATCTGCTACATGTGTGCCGCCGCGCTTGTGTCGGTAACCGAGGTCAAGGCCTGG CGAGGACGGGCTCTGGTGAAGCGGAATACGGCATACGAGTCGGCGTTTTGGTACTCGACTCAAGTGGCCAAGCTC TGCATCCCTCTCTCTTACAACTACGTGACGTTCCTCACGCCCGACGTCTACAAGAAGACGACGTTTTACCGATTC CTCGGCGAGCAGATTGAGTCGACGGCACCGGGTCGCTGGTTCGACGACTTGTTTCCTATCATTCTCCTTTTCCCT GTGGTGGCGACGCTATTCGGGCTGTACGGCAGGGCCAAACGTCTCTTGTTCGGCATCGACATGGTTGACGACGAT GACGGTGATGATCCGTTCGGCTACGGCACTTACTCCTGGCGTGAGGGCCAGCGACTGCTAGAGCAAGACGTCGAG GGCAACGAGGCGTCCCGACGACAACAAGACGCGACGATGAGGCTCGCCGCAGCCCTCGGCAGCCGATCAGCGCCG GGCTCCGTGTCCGCAGCGGGGACGACAACCGGAGGCGGCAGCTTCGGAGGTCCCCGATCGACGTCGCCGAAGCCG AGGCTGCCACCACGACAGCGATTCTCGGAGACGGAGCCCGAGGATGATAATATCCTGCAGATTCTCGGGCATCGG ATGAGGAACACGATTGATACGATGGAGCCGCCGCGGTGGTTGCAGGAGATTGGCGAGGGGATCAAGAAAACGGAT CTGTTTCCTGGGGATGGACGCGTTGGTGACGTTGATTTCCGGCGCTGGTTTGGGGGGGGAGGCGGAGGCGGAGGC GGAGGCGGAGGACGGATCCGTCTGTAG
Gene	>Ophcf2\|04513 ATGCCGCACGCCACCAGCGCCGCGACGCCTGTCGGCTCCATCGTCTTTTGTCTCTTGGCGCTGCTCGTCATCTCC CTCGGGGTCCTGCTGATGCTACGGCATTACCTTCCGCTCCGCTCGACACCGGCTTTCTATCTTGTTCCCATATTC TTTGCCTTGTGGCTTCCATCGATCGTCGTTATCCTCGTTCCTGTGGACCTCGCGTCGAGCGCGGCAACCGACGAT GATGCTACAAAAGGCATATGGCTTCCTCAACGTGTTATCCTAGTGTCATGGAGGATTACGTACTGGCTGACGTTT GCCCTGACCTGGTATGCCTTGCCAAAGCTTTCAAAGGGCTTCCGTTGATTATGCTAATCTGGGCTTCAGGTTTAT TCTTCCCATTCTTGCCGAGTACTCCGATGCTGGTTATCGCGATTCCGACGACAAGCTGAGATACTCGCTGCGACA GAATGCCCAGTTCTACGCAATCTTCGTCCTCGCGGGGCTCGCCGGCTTCATCTACACGGCAGTCGTCTACAAGCT CGACTTTGCGTCGCTCAAAGCCTTTGTCATGGCCGCCTCTTACTGCTGGGTCCTCGTCTTTGCCATCTACCTCAT GGGCCACGGGCTGGTATCGATCCCGAGACGCCTGATCCGCGGCGCCAGTATCAGCGGCAGCTTACGACGATTACA AGCCATGGCACCCAAGGTTCACGATCAGATGGAAGACTCGCTCGTCGCGCTGGAGGAGGTAGAGGAGGAGGTCCT CGAGGTCCGCCGGCGCAAGGTCAGCAGCTGTGTGGAGTTTCAAGACTGGATAGAGGAGCTGGCCAGTCTCATCCC CAACCAACCGCCATCGACGACCATGGAGCCCGCAAGCCGAACCTCGGTTCCCGTCGTCATGACGCAGAAATATCT GGCTGATCTCACAAGACGACTCACTCGCGGGCGTCACGCGAGGTCTCGACGCCTAGACGAGTGGAACTGCATGAA ACAAGAGGCATCAAGAATGCAAGCCATCCTCAACTCGGCGGCCTCCAAGAGCCTCGATTTTGGCGGTTCGTCCAA GAGCATACTGACGCCCTACACCCGTTACCTGTACTATTATCACGTCGCTCCTCGCATGCGTCTGGTCCTAGGCGG TCTGCTGGCGGTGGCCTCGGTCTGCATCCTGTGGTCAGAGCTGATCAGATTTGCGTTTCCGAAGCTATCCATCAT CCGCCTCAGCGTCATCCACCACTGGGTAGGCGGCAAGGCACAGGTAGGATTCGCGGGCCAGACGATATCGTGTCT ATACATCTGCTACATGTGTGCCGCCGCGCTTGTGTCGGTAACCGAGGTCAAGGCCTGGCGAGGACGGGCTCTGGT GAAGCGGAATACGGCATACGAGTCGGCGTTTTGGTACTCGACTCAAGTGGCCAAGCTCTGCATCCCTCTCTCTTA CAACTACGTGACGTTCCTCACGCCCGACGTCTACAAGAAGACGACGTTTTACCGATTCCTCGGCGAGCAGATTGA GTCGACGGCACCGGGTCGCTGGTTCGACGACTTGTTTCCTATCATTCTCCTTTTCCCTGTGGTGGCGACGCTATT CGGGCTGTACGGCAGGGCCAAACGTCTCTTGTTCGGCATCGACATGGTTGACGACGATGACGGTGATGATCCGTT CGGCTACGGCACTTACTCCTGGCGTGAGGGCCAGCGACTGCTAGAGCAAGACGTCGAGGGCAACGAGGCGTCCCG ACGACAACAAGACGCGACGATGAGGCTCGCCGCAGCCCTCGGCAGCCGATCAGCGCCGGGCTCCGTGTCCGCAGC GGGGACGACAACCGGAGGCGGCAGCTTCGGAGGTCCCCGATCGACGTCGCCGAAGCCGAGGCTGCCACCACGACA GCGATTCTCGGAGACGGAGCCCGAGGATGATAATATCCTGCAGATTCTCGGGCATCGGATGAGGAACACGATTGA TACGATGGAGCCGCCGCGGTGGTTGCAGGAGATTGGCGAGGGGATCAAGAAAACGGATCTGTTTCCTGGGGATGG ACGCGTTGGTGACGTTGATTTCCGGCGCTGGTTTGGGGGGGGAGGCGGAGGCGGAGGCGGAGGCGGAGGACGGAT CCGTCTGTAG

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