Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04507
Gene name
Locationscaffold_04:3443751..3444824
Strand+
Gene length (bp)1073
Transcript length (bp)957
Coding sequence length (bp)957
Protein length (aa) 319

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03388 Lectin_leg-like Legume-like lectin family 2.7E-65 31 250
PF18483 Bact_lectin Bacterial lectin 1.5E-09 48 242

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 285 307 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04507
MRLPSVSAVLLAALSWGVRADEHDDLKSITLRTHSLQQPYLDSELQSRWFDFGGDTIVRTDSYIRLTSDRASQSG
WLFSRVPLTATNWEIEVEFKISGKNNLYGDGLAMWVTKQRGQPGPVFGSADRFEGLGIFIDTYKNGRQGTSFPYV
MAMAGDGHASYDKSTDGKDTELAGCSARGLRSATMPTKLRLTYVQDKQLRLELQYKVEGEWELCFETTKPPTLPN
VAYLGFSAETGELSDNHDIISVAAKNLYNHPAGAGPASSKPGSSTHGPSSSSSRSSGGSWTWFFTKMMLFIVVVA
GGYAGWTAWRAKSRSHRF*
Coding >Ophcf2|04507
ATGAGGCTGCCGTCGGTGTCGGCGGTGTTGCTGGCGGCCCTGAGCTGGGGGGTGCGCGCAGACGAGCACGATGAC
CTCAAGAGCATAACGCTGCGGACGCATAGTCTGCAACAGCCTTATCTTGACTCGGAGTTGCAGAGTCGGTGGTTT
GACTTTGGCGGCGATACCATTGTACGGACGGATTCATATATCCGGCTCACCTCAGACCGTGCCTCGCAGTCGGGC
TGGCTATTCTCACGCGTGCCCCTAACAGCAACAAACTGGGAAATCGAAGTCGAGTTCAAAATCTCAGGAAAAAAC
AACCTCTACGGCGATGGTCTAGCAATGTGGGTAACAAAGCAACGCGGCCAACCAGGCCCCGTCTTCGGCTCAGCC
GACCGCTTCGAAGGCCTAGGAATCTTCATCGACACGTACAAGAACGGCCGACAAGGGACGTCATTCCCCTACGTC
ATGGCCATGGCCGGCGACGGGCACGCCTCATACGATAAGAGCACGGATGGGAAGGACACCGAGCTGGCCGGCTGT
TCGGCTAGGGGTCTTCGGTCCGCGACCATGCCGACCAAGTTGAGGCTGACGTACGTTCAGGACAAGCAGCTAAGG
CTAGAGTTGCAGTACAAGGTTGAGGGGGAGTGGGAGCTTTGCTTCGAGACGACGAAGCCGCCCACCTTGCCCAAC
GTGGCGTATCTTGGCTTCAGCGCCGAAACGGGCGAGCTGAGCGATAACCACGACATCATCTCCGTCGCAGCCAAA
AACCTATACAACCACCCAGCAGGAGCAGGCCCCGCATCCTCCAAGCCAGGGTCATCCACACACGGCCCATCCTCG
TCATCGTCTAGATCCAGCGGCGGAAGCTGGACCTGGTTCTTCACCAAGATGATGTTGTTCATTGTTGTGGTGGCG
GGTGGTTACGCTGGCTGGACGGCGTGGAGGGCCAAGAGCCGAAGCCATCGGTTTTGA
Transcript >Ophcf2|04507
ATGAGGCTGCCGTCGGTGTCGGCGGTGTTGCTGGCGGCCCTGAGCTGGGGGGTGCGCGCAGACGAGCACGATGAC
CTCAAGAGCATAACGCTGCGGACGCATAGTCTGCAACAGCCTTATCTTGACTCGGAGTTGCAGAGTCGGTGGTTT
GACTTTGGCGGCGATACCATTGTACGGACGGATTCATATATCCGGCTCACCTCAGACCGTGCCTCGCAGTCGGGC
TGGCTATTCTCACGCGTGCCCCTAACAGCAACAAACTGGGAAATCGAAGTCGAGTTCAAAATCTCAGGAAAAAAC
AACCTCTACGGCGATGGTCTAGCAATGTGGGTAACAAAGCAACGCGGCCAACCAGGCCCCGTCTTCGGCTCAGCC
GACCGCTTCGAAGGCCTAGGAATCTTCATCGACACGTACAAGAACGGCCGACAAGGGACGTCATTCCCCTACGTC
ATGGCCATGGCCGGCGACGGGCACGCCTCATACGATAAGAGCACGGATGGGAAGGACACCGAGCTGGCCGGCTGT
TCGGCTAGGGGTCTTCGGTCCGCGACCATGCCGACCAAGTTGAGGCTGACGTACGTTCAGGACAAGCAGCTAAGG
CTAGAGTTGCAGTACAAGGTTGAGGGGGAGTGGGAGCTTTGCTTCGAGACGACGAAGCCGCCCACCTTGCCCAAC
GTGGCGTATCTTGGCTTCAGCGCCGAAACGGGCGAGCTGAGCGATAACCACGACATCATCTCCGTCGCAGCCAAA
AACCTATACAACCACCCAGCAGGAGCAGGCCCCGCATCCTCCAAGCCAGGGTCATCCACACACGGCCCATCCTCG
TCATCGTCTAGATCCAGCGGCGGAAGCTGGACCTGGTTCTTCACCAAGATGATGTTGTTCATTGTTGTGGTGGCG
GGTGGTTACGCTGGCTGGACGGCGTGGAGGGCCAAGAGCCGAAGCCATCGGTTTTGA
Gene >Ophcf2|04507
ATGAGGCTGCCGTCGGTGTCGGCGGTGTTGCTGGCGGCCCTGAGCTGGGGGGTGCGCGCAGACGAGCACGATGAC
CTCAAGAGCATAACGCTGCGGACGCATAGTCTGCAACAGGTTCGTCCTGGAGACCCGAACTGGGGGAGAAGGAGG
CGCGGCTGACGGCCATAGCCTTATCTTGACTCGGAGTTGCAGAGTCGGTGGTTTGACTTTGGCGGCGATACCATT
GTACGGACGGATTCGTATGTCGATCTCTGCGCTGGAGTCGTCAGGATTCGCTAACCTGTCTCTTTGTTGGGGGCA
GATATATCCGGCTCACCTCAGACCGTGCCTCGCAGTCGGGCTGGCTATTCTCACGCGTGCCCCTAACAGCAACAA
ACTGGGAAATCGAAGTCGAGTTCAAAATCTCAGGAAAAAACAACCTCTACGGCGATGGTCTAGCAATGTGGGTAA
CAAAGCAACGCGGCCAACCAGGCCCCGTCTTCGGCTCAGCCGACCGCTTCGAAGGCCTAGGAATCTTCATCGACA
CGTACAAGAACGGCCGACAAGGGACGTCATTCCCCTACGTCATGGCCATGGCCGGCGACGGGCACGCCTCATACG
ATAAGAGCACGGATGGGAAGGACACCGAGCTGGCCGGCTGTTCGGCTAGGGGTCTTCGGTCCGCGACCATGCCGA
CCAAGTTGAGGCTGACGTACGTTCAGGACAAGCAGCTAAGGCTAGAGTTGCAGTACAAGGTTGAGGGGGAGTGGG
AGCTTTGCTTCGAGACGACGAAGCCGCCCACCTTGCCCAACGTGGCGTATCTTGGCTTCAGCGCCGAAACGGGCG
AGCTGAGCGATAACCACGACATCATCTCCGTCGCAGCCAAAAACCTATACAACCACCCAGCAGGAGCAGGCCCCG
CATCCTCCAAGCCAGGGTCATCCACACACGGCCCATCCTCGTCATCGTCTAGATCCAGCGGCGGAAGCTGGACCT
GGTTCTTCACCAAGATGATGTTGTTCATTGTTGTGGTGGCGGGTGGTTACGCTGGCTGGACGGCGTGGAGGGCCA
AGAGCCGAAGCCATCGGTTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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