© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04486 |
| Gene name | |
| Location | scaffold_04:3377335..3380336 |
| Strand | + |
| Gene length (bp) | 3001 |
| Transcript length (bp) | 2532 |
| Coding sequence length (bp) | 2532 |
| Protein length (aa) | 844 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03169 | OPT | OPT oligopeptide transporter protein | 1.8E-174 | 142 | 801 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035673 | oligopeptide transmembrane transporter activity | Yes |
| GO:1904680 | peptide transmembrane transporter activity | No |
| GO:0042887 | amide transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.0507 | 0.087 | 0.087 | 0.2637 | 0.1368 | 0.0459 | 0.3594 | 0.361 | 0.2665 | 0.0063 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 250 | 269 | 19 |
| 2 | 276 | 298 | 22 |
| 3 | 330 | 352 | 22 |
| 4 | 404 | 426 | 22 |
| 5 | 470 | 492 | 22 |
| 6 | 522 | 544 | 22 |
| 7 | 548 | 570 | 22 |
| 8 | 596 | 618 | 22 |
| 9 | 633 | 655 | 22 |
| 10 | 703 | 722 | 19 |
| 11 | 737 | 759 | 22 |
| 12 | 780 | 802 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 24 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04486 MFEEFTYFLSWLDGFQARSTFLKTSYIYTDLIDPRLYGMASAAEATGVEGRGPQLSHRRSVSLDSLDGLDGLDGL DGLNPERENAPLMLDDEEYELRNWQPRVEGAHDKAVDEEGDDEEEEEDSPYAEVRAAIGNRDEDVSCSTIRAWVI GLLLVLVGASTNTLFSLRQPSISVGALVGQILAWPLGHGWARLFPDWQVPTPFGRSLPLNPGPFTIKEHSIIGVM ASVSFSVAYSTDIILAQMVFYKQDFGILFQILLTISTQSLGYGIAGAMRKYLVYPASMIWPGILVSVTMMNVMYE KEDDDKDGSSSSFGGSIPRYRWFGLVTAGAFVYYFIPGFLVQCLSVFAFATWMAPQNVVINQLFGGTTGLSLVPL TLDWTQIAGWVGSPLIPPWYAIVNVTIGVSVFYVFGCSVLHYSGAWYAPFLPMSDASTYDNTGKPYNTSRVLKPD FTLDEDAYRAYSPLFISTSFAMAYGLAFAAISSLIVHTFLHYRKQIWKQYRNSTGEKPDIHMKLMSRYSEAPMWW YLTLFVAMLALGLYTVLAYPTQLSWWAYLLAVGISYGFSLPIGIIEAVTSSQIGLNVLTEFIYGYIQPGRPLALM IFKTFGSITMGQALRFVADLKFGHYMKIPPKTMFFAQVIATTLSSVVQIATLNLALGSIEDVCDIHQRDRFTCPG GRVFFSASVIWGLIGPDRIFSPGRIYQGLFLFFVLGAVTPIAIHFASKRYPSSPVKYLMAPLIFGGAGAIPPATP LNYFSWAMVGFIFQYYIKRRHFRWWSRLNFLTSCGLDLGLALGTLFIFFAFSMHGIKPPRWWPNTVVSTTMDVQG TAVQVRVDEGQRFGPDVW* |
| Coding | >Ophcf2|04486 ATGTTCGAGGAGTTCACATACTTCTTGTCATGGCTTGACGGGTTCCAGGCGCGTTCCACTTTTCTCAAGACTTCC TACATCTATACGGATCTTATCGACCCTCGTCTATACGGTATGGCGTCGGCGGCCGAAGCGACGGGCGTCGAGGGC AGAGGTCCCCAGCTGTCTCATCGACGGTCCGTGTCCCTCGACAGCCTCGATGGGCTCGACGGCCTCGACGGCCTC GACGGTCTCAACCCGGAGCGGGAGAACGCACCGCTCATGTTGGATGACGAGGAGTACGAGCTCCGAAACTGGCAG CCACGCGTCGAGGGCGCACACGACAAGGCAGTGGACGAAGAGGGTGATGACGAAGAAGAGGAAGAGGATTCGCCA TATGCCGAGGTCCGTGCCGCCATTGGGAACCGCGACGAGGATGTTTCCTGCAGCACGATCCGCGCCTGGGTCATT GGCCTGCTCCTCGTCCTCGTCGGCGCCTCGACCAATACGCTCTTCTCGCTGCGACAGCCGTCCATCTCGGTGGGC GCACTGGTGGGCCAGATCCTGGCTTGGCCGCTGGGTCACGGCTGGGCACGTCTCTTCCCGGACTGGCAGGTGCCC ACTCCATTCGGACGCAGTCTGCCGTTGAATCCGGGGCCTTTTACCATCAAAGAGCACAGCATCATTGGCGTCATG GCCAGCGTTTCGTTTTCGGTCGCCTATTCGACCGATATCATACTGGCGCAGATGGTGTTTTACAAGCAGGATTTC GGCATTCTCTTCCAGATTCTATTGACCATCTCGACGCAGTCGCTCGGCTACGGCATTGCCGGTGCCATGCGCAAG TATCTCGTCTATCCGGCCTCCATGATCTGGCCCGGCATCCTAGTTTCTGTGACGATGATGAACGTCATGTACGAG AAGGAGGACGATGACAAGGACGGATCCTCGTCCTCCTTCGGCGGTTCTATACCTCGCTACCGCTGGTTTGGACTG GTGACGGCCGGCGCCTTCGTCTACTACTTCATCCCCGGGTTCCTGGTTCAGTGCCTCAGCGTCTTCGCCTTTGCC ACCTGGATGGCGCCGCAGAACGTCGTCATCAACCAGCTGTTTGGCGGCACGACGGGCCTGTCGCTGGTGCCGCTC ACGCTGGACTGGACCCAGATCGCCGGTTGGGTCGGGTCGCCGCTGATCCCGCCATGGTATGCCATCGTCAACGTC ACCATCGGCGTCTCCGTCTTCTACGTCTTTGGCTGCTCCGTGCTGCACTACTCGGGCGCCTGGTACGCACCCTTC CTGCCCATGAGCGACGCCTCAACGTACGACAACACGGGGAAGCCCTACAACACGTCGCGGGTCCTGAAGCCCGAC TTTACGCTCGACGAAGACGCCTACCGCGCGTACTCGCCGCTGTTCATAAGCACGTCGTTCGCCATGGCCTACGGC TTGGCCTTTGCCGCCATATCGTCGCTAATCGTTCACACTTTTTTGCACTATCGCAAGCAGATCTGGAAGCAGTAC CGCAACAGCACGGGCGAGAAGCCGGATATCCACATGAAGCTCATGAGCCGATATAGCGAGGCGCCCATGTGGTGG TACCTGACGCTCTTCGTCGCCATGCTCGCCCTTGGTCTCTACACCGTGCTGGCTTATCCCACTCAGCTATCGTGG TGGGCGTATCTGCTCGCCGTCGGCATATCGTACGGCTTCTCGCTGCCGATTGGCATCATCGAGGCTGTGACGAGC AGCCAGATCGGGCTCAACGTCCTGACCGAGTTCATCTACGGGTACATCCAGCCGGGCCGGCCTCTGGCTCTTATG ATCTTCAAGACGTTTGGAAGCATCACCATGGGACAGGCCCTCCGCTTCGTCGCGGACCTCAAGTTCGGCCACTAC ATGAAGATCCCGCCCAAGACCATGTTCTTCGCCCAGGTCATCGCCACCACGCTCTCGTCTGTCGTCCAGATCGCG ACGCTCAATCTGGCTCTCGGCAGCATCGAAGACGTCTGCGACATCCATCAGCGCGATCGCTTCACCTGCCCCGGT GGCCGCGTCTTCTTCTCCGCGTCCGTCATCTGGGGCCTCATCGGTCCGGACCGCATCTTCTCCCCCGGGCGCATC TACCAGGGTCTCTTCCTGTTCTTCGTGCTCGGCGCCGTCACCCCCATCGCCATTCACTTCGCATCCAAGCGATAC CCGTCATCGCCGGTCAAGTATCTGATGGCGCCTCTCATCTTCGGCGGCGCCGGCGCCATCCCTCCCGCCACGCCG CTCAACTACTTCTCCTGGGCGATGGTGGGCTTCATCTTCCAGTATTACATCAAGAGGCGTCACTTCCGCTGGTGG AGCCGCCTCAACTTCCTCACCTCGTGCGGTCTCGATCTCGGCCTCGCCCTCGGCACCCTCTTCATTTTCTTCGCC TTCTCTATGCATGGCATAAAGCCGCCCCGCTGGTGGCCCAACACCGTCGTGTCCACCACCATGGACGTTCAGGGG ACGGCTGTTCAGGTCCGCGTCGACGAGGGGCAGCGCTTCGGCCCCGATGTGTGGTAG |
| Transcript | >Ophcf2|04486 ATGTTCGAGGAGTTCACATACTTCTTGTCATGGCTTGACGGGTTCCAGGCGCGTTCCACTTTTCTCAAGACTTCC TACATCTATACGGATCTTATCGACCCTCGTCTATACGGTATGGCGTCGGCGGCCGAAGCGACGGGCGTCGAGGGC AGAGGTCCCCAGCTGTCTCATCGACGGTCCGTGTCCCTCGACAGCCTCGATGGGCTCGACGGCCTCGACGGCCTC GACGGTCTCAACCCGGAGCGGGAGAACGCACCGCTCATGTTGGATGACGAGGAGTACGAGCTCCGAAACTGGCAG CCACGCGTCGAGGGCGCACACGACAAGGCAGTGGACGAAGAGGGTGATGACGAAGAAGAGGAAGAGGATTCGCCA TATGCCGAGGTCCGTGCCGCCATTGGGAACCGCGACGAGGATGTTTCCTGCAGCACGATCCGCGCCTGGGTCATT GGCCTGCTCCTCGTCCTCGTCGGCGCCTCGACCAATACGCTCTTCTCGCTGCGACAGCCGTCCATCTCGGTGGGC GCACTGGTGGGCCAGATCCTGGCTTGGCCGCTGGGTCACGGCTGGGCACGTCTCTTCCCGGACTGGCAGGTGCCC ACTCCATTCGGACGCAGTCTGCCGTTGAATCCGGGGCCTTTTACCATCAAAGAGCACAGCATCATTGGCGTCATG GCCAGCGTTTCGTTTTCGGTCGCCTATTCGACCGATATCATACTGGCGCAGATGGTGTTTTACAAGCAGGATTTC GGCATTCTCTTCCAGATTCTATTGACCATCTCGACGCAGTCGCTCGGCTACGGCATTGCCGGTGCCATGCGCAAG TATCTCGTCTATCCGGCCTCCATGATCTGGCCCGGCATCCTAGTTTCTGTGACGATGATGAACGTCATGTACGAG AAGGAGGACGATGACAAGGACGGATCCTCGTCCTCCTTCGGCGGTTCTATACCTCGCTACCGCTGGTTTGGACTG GTGACGGCCGGCGCCTTCGTCTACTACTTCATCCCCGGGTTCCTGGTTCAGTGCCTCAGCGTCTTCGCCTTTGCC ACCTGGATGGCGCCGCAGAACGTCGTCATCAACCAGCTGTTTGGCGGCACGACGGGCCTGTCGCTGGTGCCGCTC ACGCTGGACTGGACCCAGATCGCCGGTTGGGTCGGGTCGCCGCTGATCCCGCCATGGTATGCCATCGTCAACGTC ACCATCGGCGTCTCCGTCTTCTACGTCTTTGGCTGCTCCGTGCTGCACTACTCGGGCGCCTGGTACGCACCCTTC CTGCCCATGAGCGACGCCTCAACGTACGACAACACGGGGAAGCCCTACAACACGTCGCGGGTCCTGAAGCCCGAC TTTACGCTCGACGAAGACGCCTACCGCGCGTACTCGCCGCTGTTCATAAGCACGTCGTTCGCCATGGCCTACGGC TTGGCCTTTGCCGCCATATCGTCGCTAATCGTTCACACTTTTTTGCACTATCGCAAGCAGATCTGGAAGCAGTAC CGCAACAGCACGGGCGAGAAGCCGGATATCCACATGAAGCTCATGAGCCGATATAGCGAGGCGCCCATGTGGTGG TACCTGACGCTCTTCGTCGCCATGCTCGCCCTTGGTCTCTACACCGTGCTGGCTTATCCCACTCAGCTATCGTGG TGGGCGTATCTGCTCGCCGTCGGCATATCGTACGGCTTCTCGCTGCCGATTGGCATCATCGAGGCTGTGACGAGC AGCCAGATCGGGCTCAACGTCCTGACCGAGTTCATCTACGGGTACATCCAGCCGGGCCGGCCTCTGGCTCTTATG ATCTTCAAGACGTTTGGAAGCATCACCATGGGACAGGCCCTCCGCTTCGTCGCGGACCTCAAGTTCGGCCACTAC ATGAAGATCCCGCCCAAGACCATGTTCTTCGCCCAGGTCATCGCCACCACGCTCTCGTCTGTCGTCCAGATCGCG ACGCTCAATCTGGCTCTCGGCAGCATCGAAGACGTCTGCGACATCCATCAGCGCGATCGCTTCACCTGCCCCGGT GGCCGCGTCTTCTTCTCCGCGTCCGTCATCTGGGGCCTCATCGGTCCGGACCGCATCTTCTCCCCCGGGCGCATC TACCAGGGTCTCTTCCTGTTCTTCGTGCTCGGCGCCGTCACCCCCATCGCCATTCACTTCGCATCCAAGCGATAC CCGTCATCGCCGGTCAAGTATCTGATGGCGCCTCTCATCTTCGGCGGCGCCGGCGCCATCCCTCCCGCCACGCCG CTCAACTACTTCTCCTGGGCGATGGTGGGCTTCATCTTCCAGTATTACATCAAGAGGCGTCACTTCCGCTGGTGG AGCCGCCTCAACTTCCTCACCTCGTGCGGTCTCGATCTCGGCCTCGCCCTCGGCACCCTCTTCATTTTCTTCGCC TTCTCTATGCATGGCATAAAGCCGCCCCGCTGGTGGCCCAACACCGTCGTGTCCACCACCATGGACGTTCAGGGG ACGGCTGTTCAGGTCCGCGTCGACGAGGGGCAGCGCTTCGGCCCCGATGTGTGGTAG |
| Gene | >Ophcf2|04486 ATGTTCGAGGAGTTCACATACTTCTTGTCATGGCTTGACGGGTTGGCCGATTTGGAACGTGAGCCGTGACGGAGA TTCGACTTTGTTTAGGTTCCAGGCGCGTTCCACTTTTCTCAAGACTTCCTACATCTGTTTGTCTCTTATCTGCTA CCGTCAAGCTGCTTTTCCTGATGGTCGATTGATAGATACGGATCTTATCGACCCTCGTCTATACGGTATGGCGTC GGCGGCCGAAGCGACGGGCGTCGAGGGCAGAGGTCCCCAGCTGTCTCATCGACGGTCCGTGTCCCTCGACAGCCT CGATGGGCTCGACGGCCTCGACGGCCTCGACGGTCTCAACCCGGAGCGGGAGAACGCACCGCTCATGTTGGATGA CGAGGAGTACGAGCTCCGAAACTGGCAGCCACGCGTCGAGGGCGCACACGACAAGGCAGTGGACGAAGAGGGTGA TGACGAAGAAGAGGAAGAGGATTCGCCATATGCCGAGGTCCGTGCCGCCATTGGGAACCGCGACGAGGATGTTTC CTGCAGCACGATCCGCGCCTGGGTCATTGGCCTGCTCCTCGTCCTCGTCGGCGCCTCGACCAATACGCTCTTCTC GCTGCGACAGCCGTCCATCTCGGTGGGCGCACTGGTGGGCCAGATCCTGGCTTGGCCGCTGGGTCACGGCTGGGC ACGTCTCTTCCCGGACTGGCAGGTGCCCACTCCATTCGGACGCAGTCTGCCGTTGAATCCGGGGCCTTTTACCAT CAAAGAGCACAGCATCATTGGCGTCATGGCCAGCGTTTCGTTTTCGGTCGCCTATTCGACCGATATCATACTGGC GCAGATGGTGTTTTACAAGCAGGATTTCGGCATTCTCTTCCAGATTCTATTGACCATCTCGACGCAGTCGCTCGG CTACGGCATTGCCGGTGCCATGCGCAAGTATCTCGGTGGGTTCCGCCCTCCTGTGACGGTTGGGTGGGCTCTCGT CCTCTCCTTGACCGACTAACTCCGGCTCCGGGGATAGTCTATCCGGCCTCCATGATCTGGCCCGGCATCCTAGTT TCTGTGACGATGATGAACGTCATGTACGAGAAGGAGGACGATGACAAGGACGGATCCTCGTCCTCCTTCGGCGGT TCTATACCTCGCTACCGCTGGTTTGGACTGGTGACGGCCGGCGCCTTCGTCTACTACTTCATCCCCGGGTTCCTG GTTCAGTGCCTCAGCGTCTTCGCCTTTGCCACCTGGATGGCGCCGCAGAACGTCGTCATCAACCAGCTGTTTGGC GGCACGACGGGCCTGTCGCTGGTGCCGCTCACGCTGGACTGGACCCAGATCGCCGGTTGGGTCGGGTCGCCGCTG ATCCCGCCATGGTATTATCTTAGCGATCCTCCTCGACAGCAGCAGATGGACGTCTTTCTCATGGGCTCTATAGGT ATGCCATCGTCAACGTCACCATCGGCGTCTCCGTCTTCTACGTCTTTGGCTGCTCCGTGCTGCACTACTCGGGCG CCTGGTACGCACCCTTCCTGCCCATGAGCGACGCCTCAACGTACGACAACACGGGGAAGCCCTACAACACGTCGC GGGTCCTGAAGCCCGACTTTACGCTCGACGAAGACGCCTACCGCGCGTACTCGCCGCTGTTCATAAGCACGTCGT TCGCCATGGCCTACGGCTTGGCCTTTGCCGCCATATCGTCGCTAATCGTTCACACTTTTTTGCACTATCGCAAGC AGATCTGGAAGCAGTACCGCAACAGCACGGGCGAGAAGCCGGATATCCACATGAAGCTCATGAGCCGATATAGCG AGGCGCCCATGTGGTGGTACCTGACGCTCTTCGTCGCCGTTCGTATCATGTCGTTCCTCCCCTTCCCCTGACGAC TCTGTGACTCACACGGAGGCCAGATGCTCGCCCTTGGTCTCTACACCGTGCTGGCTTATCCCACTCAGCTATCGT GGTGGGCGTATCTGCTCGCCGTCGGCATATCGTACGGCTTCTCGCTGCCGATTGGCATCATCGAGGCTGTGACGA GCAGCCAGATCGGGCTCAACGTCCTGACCGAGTTCATCTACGGGTACATCCAGCCGGGCCGGCCTCTGGCTCTTA TGATGTACGACTCCGTCTTTGCACTCTTGCTGTCTATAGCTGACCAACGGACAGCTTCAAGACGTTTGGAAGCAT CACCATGTGCGCCCCCCGCAATGGTCCCTTGTGAATGCTTCCCCTCTGACGCATCCTTCAGGGGACAGGCCCTCC GCTTCGTCGCGGACCTCAAGTTCGGCCACTACATGAAGATCCCGCCCAAGACCATGTTCTTCGCCCAGGTCATCG CCACCACGCTCTCGTCTGTCGTCCAGATCGCGACGCTCAATCTGGCTCTCGGCAGCATCGAAGACGTCTGCGACA TCCATCAGCGCGATCGCTTCACCTGCCCCGGTGGCCGCGTCTTCTTCTCCGGTGAGTTCTCTCATCGACCTCACA TCAGCTTCCCATGCCTCGTCTGACTCTCCCCTACGAAGCGTCCGTCATCTGGGGCCTCATCGGTCCGGACCGCAT CTTCTCCCCCGGGCGCATCTACCAGGGTCTCTTCCTGTTCTTCGTGCTCGGCGCCGTCACCCCCATCGCCATTCA CTTCGCATCCAAGCGATACCCGTCATCGCCGGTCAAGTATCTGATGGCGCCTCTCATCTTCGGCGGCGCCGGCGC CATCCCTCCCGCCACGCCGCTCAACTACTTCTCCTGGGCGATGGTGGGCTTCATCTTCCAGTATTACATCAAGAG GCGTCACTTCCGCTGGTGGAGCCGCCTCAACTTCCTCACCTCGTGCGGTCTCGATCTCGGCCTCGCCCTCGGCAC CCTCTTCATTTTCTTCGCCTTCTCTATGCATGGCATAAAGCCGCCCCGCTGGTGGCCCAACACCGTCGTGTCCAC CACCATGGACGTTCAGGGGACGGCTGTTCAGGTCCGCGTCGACGAGGGGCAGCGCTTCGGCCCCGATGTGTGGTA G |