© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04482 |
| Gene name | |
| Location | scaffold_04:3370952..3372643 |
| Strand | + |
| Gene length (bp) | 1691 |
| Transcript length (bp) | 1488 |
| Coding sequence length (bp) | 1488 |
| Protein length (aa) | 496 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.2E-20 | 97 | 263 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 6.4E-22 | 336 | 477 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 71 | 93 | 22 |
| 2 | 97 | 116 | 19 |
| 3 | 129 | 151 | 22 |
| 4 | 161 | 183 | 22 |
| 5 | 204 | 226 | 22 |
| 6 | 239 | 261 | 22 |
| 7 | 331 | 353 | 22 |
| 8 | 368 | 390 | 22 |
| 9 | 403 | 425 | 22 |
| 10 | 435 | 452 | 17 |
| 11 | 459 | 481 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 84.63 | 48.54 | 120.73 |
| Alive | In ants, during behavior modification | 124.45 | 66.48 | 182.42 |
| Dead | In ants, recently dead | 128.18 | 71.14 | 185.21 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.040056 | yes |
| Alive | Dead | 0.894011 | no |
| Dead | Fungus | 0.020456 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04482 MSSQTEPGAGAGERTALLPHGSSSAEDASARPQGSSAYALFLDQRHTPGRDSQRLPVRSAARFWHVTKVTLLSNY VNFFLVTVPVGIVAGSMSWNPVAVFTINFLAIIPLAAVLSFATEEIANRLGEAMGGLLSATFGNAVELIVSIVAL RDGQIEVVQSSMLGSILSNLLLVMGTCFLLGGIRNRGTSGDGSQQEFTEAVAQTTCSLMTLASASLVLPAALYTV MNKTGSGGKNMQDIILVLSHGTAVLLLLLYVAYLIFQLRTHSNLFDAELQKLLKEEEAAARAGQGSNSQAQNGTR EPQNSTANNVQVQNTSTSPQPEEDVEPQMGPLAALTVLVITTILVAICADYLVKSIDAVVEKENISKTFIGLILI PIVGNAAEHVTAVVMAVRNKMNLAMGVAIGSSIQIALGLTPFLVIVGWIMGQPMSLHFETFATVAFAISVLVATY VIQDGKSNYLEGAMLIGLYIIIAVAFYVAPGDALHKVPPPPGGLA* |
| Coding | >Ophcf2|04482 ATGAGCTCACAGACGGAGCCGGGCGCCGGAGCCGGAGAGCGCACGGCCCTTCTCCCCCATGGTTCGTCTTCCGCA GAGGACGCTTCGGCCCGGCCTCAGGGGTCGTCTGCCTACGCCCTCTTCCTCGATCAGAGACATACTCCCGGGAGA GATAGCCAGAGACTGCCCGTCAGGTCTGCTGCTCGCTTCTGGCACGTCACCAAGGTGACTCTTCTCAGCAACTAT GTCAACTTTTTCCTCGTCACCGTGCCCGTCGGCATCGTCGCCGGCTCCATGTCGTGGAACCCCGTCGCCGTCTTC ACCATCAACTTCCTGGCCATCATCCCGCTTGCCGCCGTCTTGTCCTTCGCCACCGAGGAGATCGCCAACAGGCTC GGTGAAGCTATGGGCGGGCTCCTCAGTGCCACCTTTGGCAACGCCGTTGAACTCATCGTTAGCATCGTCGCCCTC AGAGACGGCCAGATCGAAGTCGTCCAGTCCTCGATGCTGGGCTCTATTCTATCCAACCTGCTGCTCGTCATGGGC ACGTGCTTTCTTCTCGGTGGCATTCGCAACCGGGGTACAAGCGGCGACGGCTCACAGCAAGAGTTTACAGAGGCT GTCGCGCAGACGACGTGCTCTTTGATGACGCTGGCATCCGCTTCTCTCGTCCTCCCTGCCGCTCTGTATACCGTC ATGAATAAGACCGGCTCCGGCGGAAAGAACATGCAGGACATTATCCTCGTTCTCTCCCATGGAACAGCCGTTCTA CTGCTCTTGCTCTATGTCGCGTATCTCATCTTTCAGCTCCGCACACATAGCAATCTCTTTGATGCCGAGCTGCAG AAACTGTTGAAGGAAGAAGAGGCCGCTGCGCGCGCCGGACAGGGAAGCAATAGCCAGGCTCAGAACGGCACGAGG GAACCCCAGAACTCCACGGCCAACAACGTCCAGGTCCAGAACACCAGTACCTCTCCTCAGCCCGAGGAAGACGTC GAACCGCAAATGGGCCCCTTGGCCGCCCTCACCGTCCTCGTCATCACCACCATCCTCGTCGCCATCTGCGCAGAC TATCTCGTCAAGAGCATAGACGCCGTCGTCGAAAAGGAAAACATAAGCAAGACCTTTATCGGACTCATCCTCATC CCCATCGTCGGCAACGCAGCCGAGCACGTCACCGCCGTCGTCATGGCGGTCCGAAACAAGATGAATCTAGCCATG GGCGTCGCCATCGGGTCCTCGATTCAGATTGCGCTTGGCCTCACTCCGTTTTTGGTCATCGTCGGTTGGATCATG GGTCAGCCCATGAGTCTTCACTTCGAGACGTTTGCGACGGTGGCCTTTGCTATATCCGTCTTGGTTGCTACCTAC GTTATCCAGGATGGCAAGTCCAACTATCTCGAAGGTGCCATGCTCATCGGGCTGTACATCATCATCGCCGTCGCC TTTTACGTCGCGCCCGGCGATGCTTTGCACAAGGTTCCGCCGCCGCCGGGAGGTCTGGCGTAG |
| Transcript | >Ophcf2|04482 ATGAGCTCACAGACGGAGCCGGGCGCCGGAGCCGGAGAGCGCACGGCCCTTCTCCCCCATGGTTCGTCTTCCGCA GAGGACGCTTCGGCCCGGCCTCAGGGGTCGTCTGCCTACGCCCTCTTCCTCGATCAGAGACATACTCCCGGGAGA GATAGCCAGAGACTGCCCGTCAGGTCTGCTGCTCGCTTCTGGCACGTCACCAAGGTGACTCTTCTCAGCAACTAT GTCAACTTTTTCCTCGTCACCGTGCCCGTCGGCATCGTCGCCGGCTCCATGTCGTGGAACCCCGTCGCCGTCTTC ACCATCAACTTCCTGGCCATCATCCCGCTTGCCGCCGTCTTGTCCTTCGCCACCGAGGAGATCGCCAACAGGCTC GGTGAAGCTATGGGCGGGCTCCTCAGTGCCACCTTTGGCAACGCCGTTGAACTCATCGTTAGCATCGTCGCCCTC AGAGACGGCCAGATCGAAGTCGTCCAGTCCTCGATGCTGGGCTCTATTCTATCCAACCTGCTGCTCGTCATGGGC ACGTGCTTTCTTCTCGGTGGCATTCGCAACCGGGGTACAAGCGGCGACGGCTCACAGCAAGAGTTTACAGAGGCT GTCGCGCAGACGACGTGCTCTTTGATGACGCTGGCATCCGCTTCTCTCGTCCTCCCTGCCGCTCTGTATACCGTC ATGAATAAGACCGGCTCCGGCGGAAAGAACATGCAGGACATTATCCTCGTTCTCTCCCATGGAACAGCCGTTCTA CTGCTCTTGCTCTATGTCGCGTATCTCATCTTTCAGCTCCGCACACATAGCAATCTCTTTGATGCCGAGCTGCAG AAACTGTTGAAGGAAGAAGAGGCCGCTGCGCGCGCCGGACAGGGAAGCAATAGCCAGGCTCAGAACGGCACGAGG GAACCCCAGAACTCCACGGCCAACAACGTCCAGGTCCAGAACACCAGTACCTCTCCTCAGCCCGAGGAAGACGTC GAACCGCAAATGGGCCCCTTGGCCGCCCTCACCGTCCTCGTCATCACCACCATCCTCGTCGCCATCTGCGCAGAC TATCTCGTCAAGAGCATAGACGCCGTCGTCGAAAAGGAAAACATAAGCAAGACCTTTATCGGACTCATCCTCATC CCCATCGTCGGCAACGCAGCCGAGCACGTCACCGCCGTCGTCATGGCGGTCCGAAACAAGATGAATCTAGCCATG GGCGTCGCCATCGGGTCCTCGATTCAGATTGCGCTTGGCCTCACTCCGTTTTTGGTCATCGTCGGTTGGATCATG GGTCAGCCCATGAGTCTTCACTTCGAGACGTTTGCGACGGTGGCCTTTGCTATATCCGTCTTGGTTGCTACCTAC GTTATCCAGGATGGCAAGTCCAACTATCTCGAAGGTGCCATGCTCATCGGGCTGTACATCATCATCGCCGTCGCC TTTTACGTCGCGCCCGGCGATGCTTTGCACAAGGTTCCGCCGCCGCCGGGAGGTCTGGCGTAG |
| Gene | >Ophcf2|04482 ATGAGCTCACAGACGGAGCCGGGCGCCGGAGCCGGAGAGCGCACGGCCCTTCTCCCCCATGGTTCGTCTTCCGCA GAGGACGCTTCGGCCCGGCCTCAGGGGTCGTCTGCCTACGCCCTCTTCCTCGATCAGAGACATACTCCCGGGAGA GATAGCCAGAGACTGCCCGTCAGGTCTGCTGCTCGCTTCTGGCACGTCACCAAGGTGACTCTTCTCAGCAGTCAG TCTACTATACCTGATCAGCTTTCTGTCCTCCAAGTCTGACCGTCGATAGACTATGTCAACTTTTTCCTCGTCACC GTGCCCGTCGGCATCGTCGCCGGCTCCATGTCGTGGAACCCCGTCGCCGTCTTCACCATCAACTTCCTGGCCATC ATCCCGCTTGCCGCCGTCTTGTCCTTCGCCACCGAGGAGATCGCCAACAGGCTCGGTGAAGCTATGGGCGGGCTC CTCAGTGCCACCTTTGGCAACGCCGTTGAACTCATCGTGCGTACTCGATTTCTTCGACTCGACTCAGAAACTCAT CTGTCCTAGGTTAGCATCGTCGCCCTCAGAGACGGCCAGATCGAAGTCGTCCAGTCCTCGATGCTGGGCTCTATT CTATCCAACCTGCTGCTCGTCATGGGCACGTGCTTTCTTCTCGGTGGCATTCGCAACCGGGGTACAAGCGGCGAC GGCTCACAGCAAGAGTTTACAGAGGCTGTCGCGCAGACGACGTGCTCTTTGATGACGCTGGCATCCGCTTCTCTC GTCCTCCCTGCCGCTGTAGGATGCCCCGATTCCTTGGACGATCCCGTCTTACTGATCTCGGCCGACGCAGCTGTA TACCGTCATGAATAAGACCGGCTCCGGCGGAAAGAACATGCAGGACATTATCCTCGTTCTCTCCCATGGAACAGC CGTTCTACTGCTCTTGCTCTATGTCGCGTATCTCATCTTTCAGCTCCGCACACATAGCAATCTCTTTGATGCCGA GCTGCAGAAACTGTTGAAGGAAGAAGAGGCCGCTGCGCGCGCCGGACAGGGAAGCAATAGCCAGGCTCAGAACGG CACGAGGGAACCCCAGAACTCCACGGCCAACAACGTCCAGGTCCAGAACACCAGTACCTCTCCTCAGCCCGAGGA AGACGTCGAACCGCAAATGGGCCCCTTGGCCGCCCTCACCGTCCTCGTCATCACCACCATCCTCGTCGCCATCTG CGCAGACTATCTCGTCAAGAGCATAGACGCCGTCGTCGAAAAGGAAAACATAAGCAAGACCTTTATCGGACTCAT CCTCATCCCCATCGTCGGCAACGCAGCCGAGCACGTCACCGCCGTCGTCATGGCGGTCCGAAACAAGATGAATCT AGCCATGGGCGTCGCCATCGGGTCCTCGATTCAGATTGCGCTTGGCCTCACTCCGTTTTTGGTCATCGTCGGTTG GATCATGGGTCAGCCCATGAGTCTTCACTTCGAGACGTGTAAGTCCCGCGTCACCAATCATCATGGCAGGGCTGA CAGGAACAGTTGCGACGGTGGCCTTTGCTATATCCGTCTTGGTTGCTACCTACGTTATCCAGGATGGCAAGTCCA ACTATCTCGAAGGTGCCATGCTCATCGGGCTGTACATCATCATCGCCGTCGCCTTTTACGTCGCGCCCGGCGATG CTTTGCACAAGGTTCCGCCGCCGCCGGGAGGTCTGGCGTAG |