© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|04473 |
| Gene name | |
| Location | scaffold_04:3340002..3340452 |
| Strand | + |
| Gene length (bp) | 450 |
| Transcript length (bp) | 270 |
| Coding sequence length (bp) | 270 |
| Protein length (aa) | 90 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07297 | DPM2 | Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) | 4.2E-31 | 3 | 76 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030176 | integral component of endoplasmic reticulum membrane | Yes |
| GO:0030234 | enzyme regulator activity | Yes |
| GO:0019348 | dolichol metabolic process | Yes |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0016093 | polyprenol metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0016021 | integral component of membrane | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006066 | alcohol metabolic process | No |
| GO:0006720 | isoprenoid metabolic process | No |
| GO:0031300 | intrinsic component of organelle membrane | No |
| GO:0031227 | intrinsic component of endoplasmic reticulum membrane | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0031301 | integral component of organelle membrane | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901615 | organic hydroxy compound metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 47 | 69 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 251.27 | 114.41 | 388.13 |
| Alive | In ants, during behavior modification | 282.39 | 126.06 | 438.72 |
| Dead | In ants, recently dead | 354.54 | 175.19 | 533.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.678636 | no |
| Alive | Dead | 0.275972 | no |
| Dead | Fungus | 0.126296 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04473 MLDKLLGLAMLVAASVVFLYYSVWTLLMPFVDDDHPLQNFFLPRVWAIRIPVIFVLLVSAVVGSFLGTVMIRSNR KKASKAKAAAKKKA* |
| Coding | >Ophcf2|04473 ATGCTCGACAAACTCCTGGGCCTCGCCATGCTCGTGGCCGCCTCCGTCGTCTTCCTCTACTACTCCGTCTGGACC CTCCTCATGCCCTTCGTCGACGACGACCACCCCCTTCAAAACTTCTTCCTCCCTCGCGTCTGGGCCATTCGAATC CCCGTCATCTTCGTCCTCCTCGTCTCCGCCGTCGTCGGCTCCTTTCTCGGCACCGTCATGATTCGGAGCAACCGC AAGAAGGCCTCCAAAGCCAAGGCCGCCGCCAAGAAGAAGGCGTGA |
| Transcript | >Ophcf2|04473 ATGCTCGACAAACTCCTGGGCCTCGCCATGCTCGTGGCCGCCTCCGTCGTCTTCCTCTACTACTCCGTCTGGACC CTCCTCATGCCCTTCGTCGACGACGACCACCCCCTTCAAAACTTCTTCCTCCCTCGCGTCTGGGCCATTCGAATC CCCGTCATCTTCGTCCTCCTCGTCTCCGCCGTCGTCGGCTCCTTTCTCGGCACCGTCATGATTCGGAGCAACCGC AAGAAGGCCTCCAAAGCCAAGGCCGCCGCCAAGAAGAAGGCGTGA |
| Gene | >Ophcf2|04473 ATGGTAACCATAACCATCGTTTCATCCCCTCGTTCCCACCAATGCTAACGCCTCGCAGCTCGACAAACTCCTGGG CCTCGCCATGCTCGTGGCCGCCTCCGTCGTCTTCCTCTACTACTCCGTCTGGACCCTCCTCATGGTCCGTAAAAA CTCCTGTCTATTTCTCCTCAAGTCCATCTATCCTCAATCTCCCCATTCCTCTGGCGAGCTTACCTCGCGCGCCTC ACTCCAATTCAAACCTTTACAACTCGCTAATAAGCCCAGCCCTTCGTCGACGACGACCACCCCCTTCAAAACTTC TTCCTCCCTCGCGTCTGGGCCATTCGAATCCCCGTCATCTTCGTCCTCCTCGTCTCCGCCGTCGTCGGCTCCTTT CTCGGCACCGTCATGATTCGGAGCAACCGCAAGAAGGCCTCCAAAGCCAAGGCCGCCGCCAAGAAGAAGGCGTGA |