Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04439
Gene name
Locationscaffold_04:3246077..3246536
Strand-
Gene length (bp)459
Transcript length (bp)321
Coding sequence length (bp)321
Protein length (aa) 107

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03647 Tmemb_14 Transmembrane proteins 14C 1.1E-23 9 97

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 7 26 19
2 31 48 17
3 83 102 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04439
MPQQLEYSAYALAALTAGGGLMGFVRTRSKPSLIAGSAVGILYGIGGYRMQNKQPYGIELGLLASIILGGSSIPR
AIRIRKPVPIVLSILSTFGLLTFGNAYRESL*
Coding >Ophcf2|04439
ATGCCCCAGCAGCTGGAATACTCGGCCTACGCGCTGGCGGCGCTGACCGCTGGAGGTGGCCTCATGGGTTTCGTG
CGGACGCGTTCCAAGCCTTCGCTCATCGCCGGCTCGGCTGTCGGTATCCTCTACGGCATTGGCGGCTACCGAATG
CAGAACAAACAGCCATACGGCATCGAGTTGGGTCTTTTGGCGTCGATTATTCTCGGAGGGTCGTCGATCCCGCGC
GCGATTCGCATCAGGAAGCCTGTGCCCATTGTTCTCAGCATATTGTCGACTTTTGGCCTGCTTACGTTTGGGAAT
GCGTATCGAGAGAGTCTGTGA
Transcript >Ophcf2|04439
ATGCCCCAGCAGCTGGAATACTCGGCCTACGCGCTGGCGGCGCTGACCGCTGGAGGTGGCCTCATGGGTTTCGTG
CGGACGCGTTCCAAGCCTTCGCTCATCGCCGGCTCGGCTGTCGGTATCCTCTACGGCATTGGCGGCTACCGAATG
CAGAACAAACAGCCATACGGCATCGAGTTGGGTCTTTTGGCGTCGATTATTCTCGGAGGGTCGTCGATCCCGCGC
GCGATTCGCATCAGGAAGCCTGTGCCCATTGTTCTCAGCATATTGTCGACTTTTGGCCTGCTTACGTTTGGGAAT
GCGTATCGAGAGAGTCTGTGA
Gene >Ophcf2|04439
ATGGTAGGCCAGCATCTTCAGCCGAGCGCATCCGGCCAGGAGTGCATAGCTAGCTAACACGCCGCGCCGCAAGCC
CCAGCAGCTGGAATACTCGGCCTACGCGCTGGCGGCGCTGACCGCTGGAGGTGGCCTCATGGGTTTCGTGCGGAC
GCGTTCCAAGCCTTCGCTCATCGCCGGCTCGGCTGTCGGTATCCTCTGTACGTCCCGACCACCCCTTCACCTCCT
TGCGCTGCGACACTCTTTCTAATCTGTGGATATGTGGAAGACGGCATTGGCGGCTACCGAATGCAGAACAAACAG
CCATACGGCATCGAGTTGGGTCTTTTGGCGTCGATTATTCTCGGAGGGTCGTCGATCCCGCGCGCGATTCGCATC
AGGAAGCCTGTGCCCATTGTTCTCAGCATATTGTCGACTTTTGGCCTGCTTACGTTTGGGAATGCGTATCGAGAG
AGTCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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