Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04432
Gene name
Locationscaffold_04:3232237..3234470
Strand-
Gene length (bp)2233
Transcript length (bp)1251
Coding sequence length (bp)1251
Protein length (aa) 417

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01988 VIT1 VIT family 1.1E-50 10 209

GO

GO Term Description Terminal node
GO:0030026 cellular manganese ion homeostasis Yes
GO:0005384 manganese ion transmembrane transporter activity Yes
GO:0006873 cellular ion homeostasis No
GO:0055082 cellular chemical homeostasis No
GO:0065008 regulation of biological quality No
GO:0009987 cellular process No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0046915 transition metal ion transmembrane transporter activity No
GO:0006875 cellular metal ion homeostasis No
GO:0046916 cellular transition metal ion homeostasis No
GO:0022857 transmembrane transporter activity No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0005215 transporter activity No
GO:0055076 transition metal ion homeostasis No
GO:0019725 cellular homeostasis No
GO:0008324 cation transmembrane transporter activity No
GO:0030003 cellular cation homeostasis No
GO:0003674 molecular_function No
GO:0098771 inorganic ion homeostasis No
GO:0048878 chemical homeostasis No
GO:0055071 manganese ion homeostasis No
GO:0042592 homeostatic process No
GO:0015075 ion transmembrane transporter activity No
GO:0055065 metal ion homeostasis No
GO:0065007 biological regulation No
GO:0046873 metal ion transmembrane transporter activity No
GO:0008150 biological_process No
GO:0055080 cation homeostasis No
GO:0050801 ion homeostasis No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 39 61 22
3 154 176 22
4 186 208 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 2.93 0.63 5.24
Alive In ants, during behavior modification 1.04 0.00 2.08
Dead In ants, recently dead 1.50 0.15 2.84

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.011354 yes
Alive Dead 0.342759 no
Dead Fungus 0.067592 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04432
MTPTRPRFLSGFTLGFSDGLTVPFALTAGLGSLGRADTVVYAGLAEMCAGSISMGIGGYLSAVDDAPVSSNGLDG
ERGVMLMASDEQLDIMSRDADEDELLVRRYLEPLSLSDSTVNAIFEALRCSPNSLSRAARQLHPKHTFTSQPTPR
SSPILVGLSISLGYLTGGIVPLFPYFFAPTVGQGLGWSVGLCLVALMAFGFIKCWVMGAGYGNRDSNTEQPIEDA
AMPRMGLFRTAVGKKNNIAASMGQTRDPVERRLREARSEGRDLMAELGLQRAGNGNKDLNTEQPNGHAAMPRMGL
FKTAFGKRNNVAASKDNQTASPLSIPKKRETNHRAKRLEDNMKDELVLMATEVLIKECVLDKNDEFWNKLVGEDD
GSLDYILGKRRLQSEQEDGDGDDEGGEEEDGEDRPCKARRV*
Coding >Ophcf2|04432
ATGACCCCGACCCGTCCACGGTTCCTATCCGGCTTCACGCTTGGCTTCTCCGATGGACTGACGGTTCCCTTTGCT
CTGACGGCAGGTCTTGGCTCGCTGGGTAGAGCCGACACTGTTGTCTACGCGGGTCTCGCTGAGATGTGCGCTGGG
AGCATCAGCATGGGCATTGGCGGCTATCTTTCTGCTGTTGATGATGCCCCGGTCTCATCTAATGGTCTCGATGGG
GAACGGGGTGTTATGCTGATGGCGTCGGATGAGCAGCTGGATATTATGTCTCGTGATGCTGATGAGGATGAGCTC
CTGGTGCGTCGATACCTTGAGCCACTGTCCCTATCAGACTCGACAGTCAACGCCATCTTCGAAGCCCTGCGCTGC
TCACCAAATAGCCTCTCCCGAGCAGCGCGCCAGCTCCATCCCAAACACACCTTCACCTCCCAGCCCACTCCACGA
TCCAGCCCCATCCTCGTCGGCCTGTCCATCTCGCTGGGGTATCTCACCGGCGGCATCGTCCCTCTATTCCCCTAT
TTCTTCGCCCCGACCGTCGGACAGGGCCTCGGCTGGAGTGTCGGCTTGTGTCTGGTTGCGCTTATGGCCTTTGGC
TTCATCAAGTGCTGGGTGATGGGGGCTGGTTATGGCAACAGGGATTCGAACACCGAGCAGCCCATTGAAGACGCC
GCGATGCCTCGAATGGGCCTTTTTAGAACTGCCGTCGGCAAGAAGAACAACATTGCAGCTTCCATGGGCCAAACC
AGGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAGAGATTTGATGGCCGAGCTCGGTCTTCAG
AGAGCCGGCAATGGCAACAAAGACTTGAACACCGAGCAGCCGAATGGACACGCCGCAATGCCTCGGATGGGCCTT
TTCAAAACTGCTTTCGGTAAGCGGAACAACGTTGCAGCTTCCAAGGACAACCAGACCGCATCGCCGCTCAGCATC
CCGAAAAAACGGGAGACAAACCACCGGGCCAAGAGACTTGAAGACAACATGAAAGATGAACTTGTCTTGATGGCT
ACCGAGGTCTTGATCAAGGAATGCGTTCTCGACAAGAACGATGAGTTCTGGAATAAGCTTGTTGGGGAGGACGAC
GGCAGCTTGGACTACATCTTGGGCAAGAGACGTCTTCAATCCGAGCAGGAGGATGGTGATGGCGATGATGAAGGG
GGAGAGGAAGAGGATGGTGAGGATCGTCCTTGCAAGGCGAGACGTGTCTAG
Transcript >Ophcf2|04432
ATGACCCCGACCCGTCCACGGTTCCTATCCGGCTTCACGCTTGGCTTCTCCGATGGACTGACGGTTCCCTTTGCT
CTGACGGCAGGTCTTGGCTCGCTGGGTAGAGCCGACACTGTTGTCTACGCGGGTCTCGCTGAGATGTGCGCTGGG
AGCATCAGCATGGGCATTGGCGGCTATCTTTCTGCTGTTGATGATGCCCCGGTCTCATCTAATGGTCTCGATGGG
GAACGGGGTGTTATGCTGATGGCGTCGGATGAGCAGCTGGATATTATGTCTCGTGATGCTGATGAGGATGAGCTC
CTGGTGCGTCGATACCTTGAGCCACTGTCCCTATCAGACTCGACAGTCAACGCCATCTTCGAAGCCCTGCGCTGC
TCACCAAATAGCCTCTCCCGAGCAGCGCGCCAGCTCCATCCCAAACACACCTTCACCTCCCAGCCCACTCCACGA
TCCAGCCCCATCCTCGTCGGCCTGTCCATCTCGCTGGGGTATCTCACCGGCGGCATCGTCCCTCTATTCCCCTAT
TTCTTCGCCCCGACCGTCGGACAGGGCCTCGGCTGGAGTGTCGGCTTGTGTCTGGTTGCGCTTATGGCCTTTGGC
TTCATCAAGTGCTGGGTGATGGGGGCTGGTTATGGCAACAGGGATTCGAACACCGAGCAGCCCATTGAAGACGCC
GCGATGCCTCGAATGGGCCTTTTTAGAACTGCCGTCGGCAAGAAGAACAACATTGCAGCTTCCATGGGCCAAACC
AGGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAGAGATTTGATGGCCGAGCTCGGTCTTCAG
AGAGCCGGCAATGGCAACAAAGACTTGAACACCGAGCAGCCGAATGGACACGCCGCAATGCCTCGGATGGGCCTT
TTCAAAACTGCTTTCGGTAAGCGGAACAACGTTGCAGCTTCCAAGGACAACCAGACCGCATCGCCGCTCAGCATC
CCGAAAAAACGGGAGACAAACCACCGGGCCAAGAGACTTGAAGACAACATGAAAGATGAACTTGTCTTGATGGCT
ACCGAGGTCTTGATCAAGGAATGCGTTCTCGACAAGAACGATGAGTTCTGGAATAAGCTTGTTGGGGAGGACGAC
GGCAGCTTGGACTACATCTTGGGCAAGAGACGTCTTCAATCCGAGCAGGAGGATGGTGATGGCGATGATGAAGGG
GGAGAGGAAGAGGATGGTGAGGATCGTCCTTGCAAGGCGAGACGTGTCTAG
Gene >Ophcf2|04432
ATGACCCCGACCCGTCCACGGTTCCTATCCGGCTTCACGCTTGGCTTCTCCGATGGACTGACGGTTCCCTTTGCT
CTGACGGCAGGTCTTGGCTCGCTGGGTAGAGCCGACACTGTTGTCTACGCGGGTCTCGCTGAGATGTGCGCTGGG
AGCATCAGCATGGGCATTGGCGGCTATCTTTCTGCTGTTGATGATGCCCCGGTCTCATCTAATGGTCTCGATGGG
GAACGGGGTGTTATGCTGATGGCGTCGGATGAGCAGCTGGATATTATGTCTCGTGATGCTGATGAGGATGAGCTC
CTGGTGCGTCGATACCTTGAGCCACTGTCCCTATCAGACTCGACAGTCAACGCCATCTTCGAAGCCCTGCGCTGC
TCACCAAATAGCCTCTCCCGAGCAGCGCGCCAGCTCCATCCCAAACACACCTTCACCTCCCAGCCCACTCCACGA
TCCAGCCCCATCCTCGTCGGCCTGTCCATCTCGCTGGGGTATCTCACCGGCGGCATCGTCCCTCTATTCCCCTAT
TTCTTCGCCCCGACCGTCGGACAGGGCCTCGGCTGGAGTGTCGGCTTGTGTCTGGTTGCGCTTATGGCCTTTGGC
TTCATCAAGTGCTGGGTGATGGGGGGTGGGGCTTCGTGGAGGAGATGCTTGGTGCAGGGCTGCTGGATGCTTCTT
CTTGGTAGCTTGGCTGCTGTCACTGCTGTGATTTGTGTTCATGCTGTTGCTGGTGTCGGGCTCTGACCTGCCAAG
TGTTGTAGGTAGCCATGCCGCTGTGAGGATCCGATAAGCCCCTGAGCTTCGGAAAGATATAGGCCTGGCTGTACG
CCCGAAACAGTATGGATCAAGCTACAAACGCTCCCTATCTATCCATTCACCAGCCAGTGGGGGTGTGTGTGGCTG
TACAGGCATCTGTAGGCTCAGAAGACGACGATTTAAGTTAAATGTACGAAAGCAATATATCCATCTTCCAGTATC
ATATTATCTTCTTCATCGTTCTTCCCCGTTCTTCACACCGGTTCCCTACCAATGATAAAGCCTGTTGGCCAGCTT
AGCCAGCCCCCCCTTTAGAGGTGCCGCCTGAAAGAGCAGTGAGTAGGCCAACCAGCCTGCTACAGAGGAAACCCC
GGCCTTTCAGAGAGAGAAATTTCGAGACCCGCAGCTTATTTCAGTCCCTCGCCTAGGCTGTGAATTTCTGCAGGT
TTACACTTGACCAACAACTCTCGTTCGTCTCATCTCGCATCAAACAGAGACTTGTTTTTTTTCTACTACATTAAC
TAGGCACCCCCCCCCCCCCCATCTTCTTCATCTTGTTCTCAAGAGAACACAACCTTCATCACATTCTATCGCAGA
ACGCAGCCATCAAGAACAGCAAATTTGATTCTCCCACTCGGCTATTCCATCGCAAACGGATCCCATGTCTTCACC
TCCCGACGCCCCCAAAGAGGGAGAAAGTTCCCAAGCATCGACTGTGAGGCAGAATCTCTCGGATGCCTACTTTTC
CAGCTACATGGATCGGCTGGTTGAAACCATGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAG
GGACTTGATGGCCGAGCTCGGTCTTGCGAAAGCTGGTTATGGCAACAGGGATTCGAACACCGAGCAGCCCATTGA
AGACGCCGCGATGCCTCGAATGGGCCTTTTTAGAACTGCCGTCGGCAAGAAGAACAACATTGCAGCTTCCATGGG
CCAAACCAGGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAGAGATTTGATGGCCGAGCTCGG
TCTTCAGAGAGCCGGCAATGGCAACAAAGACTTGAACACCGAGCAGCCGAATGGACACGCCGCAATGCCTCGGAT
GGGCCTTTTCAAAACTGCTTTCGGTAAGCGGAACAACGTTGCAGCTTCCAAGGACAACCAGACCGCATCGCCGCT
CAGCATCCCGAAAAAACGGGAGACAAACCACCGGGCCAAGAGACTTGAAGACAACATGAAAGATGAACTTGTCTT
GATGGCTACCGAGGTCTTGATCAAGGAATGCGTTCTCGACAAGAACGATGAGTTCTGGAATAAGCTTGTTGGGGA
GGACGACGGCAGCTTGGACTACATCTTGGGCAAGAGACGTCTTCAATCCGAGCAGGAGGATGGTGATGGCGATGA
TGAAGGGGGAGAGGAAGAGGATGGTGAGGATCGTCCTTGCAAGGCGAGACGTGTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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