© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04432 |
| Gene name | |
| Location | scaffold_04:3232237..3234470 |
| Strand | - |
| Gene length (bp) | 2233 |
| Transcript length (bp) | 1251 |
| Coding sequence length (bp) | 1251 |
| Protein length (aa) | 417 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01988 | VIT1 | VIT family | 1.1E-50 | 10 | 209 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030026 | cellular manganese ion homeostasis | Yes |
| GO:0005384 | manganese ion transmembrane transporter activity | Yes |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0046916 | cellular transition metal ion homeostasis | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0055076 | transition metal ion homeostasis | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0003674 | molecular_function | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0055071 | manganese ion homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0065007 | biological regulation | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0055080 | cation homeostasis | No |
| GO:0050801 | ion homeostasis | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 154 | 176 | 22 |
| 4 | 186 | 208 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 2.93 | 0.63 | 5.24 |
| Alive | In ants, during behavior modification | 1.04 | 0.00 | 2.08 |
| Dead | In ants, recently dead | 1.50 | 0.15 | 2.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.011354 | yes |
| Alive | Dead | 0.342759 | no |
| Dead | Fungus | 0.067592 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04432 MTPTRPRFLSGFTLGFSDGLTVPFALTAGLGSLGRADTVVYAGLAEMCAGSISMGIGGYLSAVDDAPVSSNGLDG ERGVMLMASDEQLDIMSRDADEDELLVRRYLEPLSLSDSTVNAIFEALRCSPNSLSRAARQLHPKHTFTSQPTPR SSPILVGLSISLGYLTGGIVPLFPYFFAPTVGQGLGWSVGLCLVALMAFGFIKCWVMGAGYGNRDSNTEQPIEDA AMPRMGLFRTAVGKKNNIAASMGQTRDPVERRLREARSEGRDLMAELGLQRAGNGNKDLNTEQPNGHAAMPRMGL FKTAFGKRNNVAASKDNQTASPLSIPKKRETNHRAKRLEDNMKDELVLMATEVLIKECVLDKNDEFWNKLVGEDD GSLDYILGKRRLQSEQEDGDGDDEGGEEEDGEDRPCKARRV* |
| Coding | >Ophcf2|04432 ATGACCCCGACCCGTCCACGGTTCCTATCCGGCTTCACGCTTGGCTTCTCCGATGGACTGACGGTTCCCTTTGCT CTGACGGCAGGTCTTGGCTCGCTGGGTAGAGCCGACACTGTTGTCTACGCGGGTCTCGCTGAGATGTGCGCTGGG AGCATCAGCATGGGCATTGGCGGCTATCTTTCTGCTGTTGATGATGCCCCGGTCTCATCTAATGGTCTCGATGGG GAACGGGGTGTTATGCTGATGGCGTCGGATGAGCAGCTGGATATTATGTCTCGTGATGCTGATGAGGATGAGCTC CTGGTGCGTCGATACCTTGAGCCACTGTCCCTATCAGACTCGACAGTCAACGCCATCTTCGAAGCCCTGCGCTGC TCACCAAATAGCCTCTCCCGAGCAGCGCGCCAGCTCCATCCCAAACACACCTTCACCTCCCAGCCCACTCCACGA TCCAGCCCCATCCTCGTCGGCCTGTCCATCTCGCTGGGGTATCTCACCGGCGGCATCGTCCCTCTATTCCCCTAT TTCTTCGCCCCGACCGTCGGACAGGGCCTCGGCTGGAGTGTCGGCTTGTGTCTGGTTGCGCTTATGGCCTTTGGC TTCATCAAGTGCTGGGTGATGGGGGCTGGTTATGGCAACAGGGATTCGAACACCGAGCAGCCCATTGAAGACGCC GCGATGCCTCGAATGGGCCTTTTTAGAACTGCCGTCGGCAAGAAGAACAACATTGCAGCTTCCATGGGCCAAACC AGGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAGAGATTTGATGGCCGAGCTCGGTCTTCAG AGAGCCGGCAATGGCAACAAAGACTTGAACACCGAGCAGCCGAATGGACACGCCGCAATGCCTCGGATGGGCCTT TTCAAAACTGCTTTCGGTAAGCGGAACAACGTTGCAGCTTCCAAGGACAACCAGACCGCATCGCCGCTCAGCATC CCGAAAAAACGGGAGACAAACCACCGGGCCAAGAGACTTGAAGACAACATGAAAGATGAACTTGTCTTGATGGCT ACCGAGGTCTTGATCAAGGAATGCGTTCTCGACAAGAACGATGAGTTCTGGAATAAGCTTGTTGGGGAGGACGAC GGCAGCTTGGACTACATCTTGGGCAAGAGACGTCTTCAATCCGAGCAGGAGGATGGTGATGGCGATGATGAAGGG GGAGAGGAAGAGGATGGTGAGGATCGTCCTTGCAAGGCGAGACGTGTCTAG |
| Transcript | >Ophcf2|04432 ATGACCCCGACCCGTCCACGGTTCCTATCCGGCTTCACGCTTGGCTTCTCCGATGGACTGACGGTTCCCTTTGCT CTGACGGCAGGTCTTGGCTCGCTGGGTAGAGCCGACACTGTTGTCTACGCGGGTCTCGCTGAGATGTGCGCTGGG AGCATCAGCATGGGCATTGGCGGCTATCTTTCTGCTGTTGATGATGCCCCGGTCTCATCTAATGGTCTCGATGGG GAACGGGGTGTTATGCTGATGGCGTCGGATGAGCAGCTGGATATTATGTCTCGTGATGCTGATGAGGATGAGCTC CTGGTGCGTCGATACCTTGAGCCACTGTCCCTATCAGACTCGACAGTCAACGCCATCTTCGAAGCCCTGCGCTGC TCACCAAATAGCCTCTCCCGAGCAGCGCGCCAGCTCCATCCCAAACACACCTTCACCTCCCAGCCCACTCCACGA TCCAGCCCCATCCTCGTCGGCCTGTCCATCTCGCTGGGGTATCTCACCGGCGGCATCGTCCCTCTATTCCCCTAT TTCTTCGCCCCGACCGTCGGACAGGGCCTCGGCTGGAGTGTCGGCTTGTGTCTGGTTGCGCTTATGGCCTTTGGC TTCATCAAGTGCTGGGTGATGGGGGCTGGTTATGGCAACAGGGATTCGAACACCGAGCAGCCCATTGAAGACGCC GCGATGCCTCGAATGGGCCTTTTTAGAACTGCCGTCGGCAAGAAGAACAACATTGCAGCTTCCATGGGCCAAACC AGGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAGAGATTTGATGGCCGAGCTCGGTCTTCAG AGAGCCGGCAATGGCAACAAAGACTTGAACACCGAGCAGCCGAATGGACACGCCGCAATGCCTCGGATGGGCCTT TTCAAAACTGCTTTCGGTAAGCGGAACAACGTTGCAGCTTCCAAGGACAACCAGACCGCATCGCCGCTCAGCATC CCGAAAAAACGGGAGACAAACCACCGGGCCAAGAGACTTGAAGACAACATGAAAGATGAACTTGTCTTGATGGCT ACCGAGGTCTTGATCAAGGAATGCGTTCTCGACAAGAACGATGAGTTCTGGAATAAGCTTGTTGGGGAGGACGAC GGCAGCTTGGACTACATCTTGGGCAAGAGACGTCTTCAATCCGAGCAGGAGGATGGTGATGGCGATGATGAAGGG GGAGAGGAAGAGGATGGTGAGGATCGTCCTTGCAAGGCGAGACGTGTCTAG |
| Gene | >Ophcf2|04432 ATGACCCCGACCCGTCCACGGTTCCTATCCGGCTTCACGCTTGGCTTCTCCGATGGACTGACGGTTCCCTTTGCT CTGACGGCAGGTCTTGGCTCGCTGGGTAGAGCCGACACTGTTGTCTACGCGGGTCTCGCTGAGATGTGCGCTGGG AGCATCAGCATGGGCATTGGCGGCTATCTTTCTGCTGTTGATGATGCCCCGGTCTCATCTAATGGTCTCGATGGG GAACGGGGTGTTATGCTGATGGCGTCGGATGAGCAGCTGGATATTATGTCTCGTGATGCTGATGAGGATGAGCTC CTGGTGCGTCGATACCTTGAGCCACTGTCCCTATCAGACTCGACAGTCAACGCCATCTTCGAAGCCCTGCGCTGC TCACCAAATAGCCTCTCCCGAGCAGCGCGCCAGCTCCATCCCAAACACACCTTCACCTCCCAGCCCACTCCACGA TCCAGCCCCATCCTCGTCGGCCTGTCCATCTCGCTGGGGTATCTCACCGGCGGCATCGTCCCTCTATTCCCCTAT TTCTTCGCCCCGACCGTCGGACAGGGCCTCGGCTGGAGTGTCGGCTTGTGTCTGGTTGCGCTTATGGCCTTTGGC TTCATCAAGTGCTGGGTGATGGGGGGTGGGGCTTCGTGGAGGAGATGCTTGGTGCAGGGCTGCTGGATGCTTCTT CTTGGTAGCTTGGCTGCTGTCACTGCTGTGATTTGTGTTCATGCTGTTGCTGGTGTCGGGCTCTGACCTGCCAAG TGTTGTAGGTAGCCATGCCGCTGTGAGGATCCGATAAGCCCCTGAGCTTCGGAAAGATATAGGCCTGGCTGTACG CCCGAAACAGTATGGATCAAGCTACAAACGCTCCCTATCTATCCATTCACCAGCCAGTGGGGGTGTGTGTGGCTG TACAGGCATCTGTAGGCTCAGAAGACGACGATTTAAGTTAAATGTACGAAAGCAATATATCCATCTTCCAGTATC ATATTATCTTCTTCATCGTTCTTCCCCGTTCTTCACACCGGTTCCCTACCAATGATAAAGCCTGTTGGCCAGCTT AGCCAGCCCCCCCTTTAGAGGTGCCGCCTGAAAGAGCAGTGAGTAGGCCAACCAGCCTGCTACAGAGGAAACCCC GGCCTTTCAGAGAGAGAAATTTCGAGACCCGCAGCTTATTTCAGTCCCTCGCCTAGGCTGTGAATTTCTGCAGGT TTACACTTGACCAACAACTCTCGTTCGTCTCATCTCGCATCAAACAGAGACTTGTTTTTTTTCTACTACATTAAC TAGGCACCCCCCCCCCCCCCATCTTCTTCATCTTGTTCTCAAGAGAACACAACCTTCATCACATTCTATCGCAGA ACGCAGCCATCAAGAACAGCAAATTTGATTCTCCCACTCGGCTATTCCATCGCAAACGGATCCCATGTCTTCACC TCCCGACGCCCCCAAAGAGGGAGAAAGTTCCCAAGCATCGACTGTGAGGCAGAATCTCTCGGATGCCTACTTTTC CAGCTACATGGATCGGCTGGTTGAAACCATGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAG GGACTTGATGGCCGAGCTCGGTCTTGCGAAAGCTGGTTATGGCAACAGGGATTCGAACACCGAGCAGCCCATTGA AGACGCCGCGATGCCTCGAATGGGCCTTTTTAGAACTGCCGTCGGCAAGAAGAACAACATTGCAGCTTCCATGGG CCAAACCAGGGATCCTGTGGAGCGAAGGCTCAGGGAGGCCAGGAGTGAGGGAAGAGATTTGATGGCCGAGCTCGG TCTTCAGAGAGCCGGCAATGGCAACAAAGACTTGAACACCGAGCAGCCGAATGGACACGCCGCAATGCCTCGGAT GGGCCTTTTCAAAACTGCTTTCGGTAAGCGGAACAACGTTGCAGCTTCCAAGGACAACCAGACCGCATCGCCGCT CAGCATCCCGAAAAAACGGGAGACAAACCACCGGGCCAAGAGACTTGAAGACAACATGAAAGATGAACTTGTCTT GATGGCTACCGAGGTCTTGATCAAGGAATGCGTTCTCGACAAGAACGATGAGTTCTGGAATAAGCTTGTTGGGGA GGACGACGGCAGCTTGGACTACATCTTGGGCAAGAGACGTCTTCAATCCGAGCAGGAGGATGGTGATGGCGATGA TGAAGGGGGAGAGGAAGAGGATGGTGAGGATCGTCCTTGCAAGGCGAGACGTGTCTAG |