Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04424
Gene name
Location	scaffold_04:3214301..3215711
Strand	-
Gene length (bp)	1410
Transcript length (bp)	1287
Coding sequence length (bp)	1287
Protein length (aa)	429

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07970	COPIIcoated_ERV	Endoplasmic reticulum vesicle transporter	5.1E-89	141	410
PF13850	ERGIC_N	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)	2.7E-29	7	96

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 48	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	25	47	22
2	387	409	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04424 MPAKSRFTRLDAFTKTVDEARIRTTSGGVVTIVSLLVVLFLSWGEWAEYRRVVIRPELVVDKGRGERMEIHLNFT FPKMPCELLTLDVMDVSGEQQHGVAHGVSKVRLQPQSQGGGVIDIKSLALHDEKADHLDPKYCGECYGASPPATA KKSGCCNTCDEVREAYSAQGWAFGRGEGVEQCEREHYAEKLDAQREEGCRIEGALQVNKVVGNFHMAPGRSFSNG NIHVHDLKNYWDTPDGKKHDFTHTIHQLRFGPQLPDDVKKRLGGSGAMPWTNHHLNPLDGSQHDTTDSNLNYMYF VKIVPTSYLPLGWEKKMQRLSGTLDGDGSVETHQYSVTSHKRSLSGGNDAAEGHAERQHSKGGIPGVFFSYDISP MKVVNREEQSKSFLGFLAGLCAIVGGTLTVAAAVDRGLFEGATRLKKMRSKDL*
Coding	>Ophcf2\|04424 ATGCCGGCCAAGTCACGCTTCACCAGGCTCGATGCCTTTACGAAGACGGTCGACGAGGCTCGTATCCGGACAACG AGCGGTGGCGTCGTCACCATCGTTTCGCTGCTTGTCGTCTTGTTTCTATCGTGGGGAGAATGGGCCGAGTATCGT CGGGTGGTGATACGCCCCGAGCTGGTGGTGGACAAGGGCAGAGGCGAGCGCATGGAGATACACCTCAACTTTACC TTTCCCAAGATGCCTTGTGAGCTGCTCACGCTGGATGTCATGGACGTCTCGGGCGAACAGCAGCATGGCGTCGCC CACGGCGTCAGCAAGGTCCGGCTGCAGCCTCAGTCTCAGGGCGGTGGCGTCATCGACATCAAGTCGCTGGCTCTT CATGACGAAAAGGCCGATCACTTGGATCCCAAGTACTGCGGCGAGTGTTACGGAGCCTCGCCCCCCGCCACGGCC AAGAAGTCGGGCTGCTGCAACACGTGCGACGAGGTTCGCGAGGCCTACTCCGCTCAGGGATGGGCCTTTGGGAGG GGAGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTATGCCGAGAAGCTCGATGCGCAGAGAGAGGAGGGCTGTCGT ATCGAGGGAGCTTTGCAGGTCAACAAGGTGGTTGGGAACTTTCACATGGCTCCTGGACGCAGTTTCAGCAACGGA AATATTCACGTTCACGACCTCAAGAACTACTGGGATACGCCCGACGGGAAGAAGCACGACTTTACACACACCATT CATCAGCTGCGTTTCGGCCCTCAGCTGCCGGACGACGTCAAGAAGAGGCTGGGCGGCTCCGGGGCTATGCCGTGG ACGAATCATCACCTCAATCCGCTGGATGGGTCTCAGCACGACACGACTGATTCGAACCTCAACTACATGTACTTT GTCAAGATCGTCCCGACGTCGTATCTGCCTCTCGGATGGGAGAAGAAGATGCAGCGGCTCTCGGGAACCCTGGAC GGCGATGGCAGCGTCGAGACGCACCAGTACTCCGTCACCAGTCACAAGCGAAGTCTCAGCGGCGGGAACGATGCG GCAGAGGGCCATGCTGAGCGTCAACACTCCAAGGGCGGCATCCCGGGCGTCTTCTTCTCCTACGACATCTCGCCG ATGAAGGTTGTCAACCGCGAGGAGCAGTCCAAGTCGTTCCTCGGCTTCCTCGCGGGTCTCTGTGCCATCGTGGGC GGCACCTTGACAGTGGCGGCTGCCGTCGACAGGGGGCTGTTCGAGGGCGCGACGCGGCTGAAGAAGATGCGGTCC AAGGACCTGTGA
Transcript	>Ophcf2\|04424 ATGCCGGCCAAGTCACGCTTCACCAGGCTCGATGCCTTTACGAAGACGGTCGACGAGGCTCGTATCCGGACAACG AGCGGTGGCGTCGTCACCATCGTTTCGCTGCTTGTCGTCTTGTTTCTATCGTGGGGAGAATGGGCCGAGTATCGT CGGGTGGTGATACGCCCCGAGCTGGTGGTGGACAAGGGCAGAGGCGAGCGCATGGAGATACACCTCAACTTTACC TTTCCCAAGATGCCTTGTGAGCTGCTCACGCTGGATGTCATGGACGTCTCGGGCGAACAGCAGCATGGCGTCGCC CACGGCGTCAGCAAGGTCCGGCTGCAGCCTCAGTCTCAGGGCGGTGGCGTCATCGACATCAAGTCGCTGGCTCTT CATGACGAAAAGGCCGATCACTTGGATCCCAAGTACTGCGGCGAGTGTTACGGAGCCTCGCCCCCCGCCACGGCC AAGAAGTCGGGCTGCTGCAACACGTGCGACGAGGTTCGCGAGGCCTACTCCGCTCAGGGATGGGCCTTTGGGAGG GGAGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTATGCCGAGAAGCTCGATGCGCAGAGAGAGGAGGGCTGTCGT ATCGAGGGAGCTTTGCAGGTCAACAAGGTGGTTGGGAACTTTCACATGGCTCCTGGACGCAGTTTCAGCAACGGA AATATTCACGTTCACGACCTCAAGAACTACTGGGATACGCCCGACGGGAAGAAGCACGACTTTACACACACCATT CATCAGCTGCGTTTCGGCCCTCAGCTGCCGGACGACGTCAAGAAGAGGCTGGGCGGCTCCGGGGCTATGCCGTGG ACGAATCATCACCTCAATCCGCTGGATGGGTCTCAGCACGACACGACTGATTCGAACCTCAACTACATGTACTTT GTCAAGATCGTCCCGACGTCGTATCTGCCTCTCGGATGGGAGAAGAAGATGCAGCGGCTCTCGGGAACCCTGGAC GGCGATGGCAGCGTCGAGACGCACCAGTACTCCGTCACCAGTCACAAGCGAAGTCTCAGCGGCGGGAACGATGCG GCAGAGGGCCATGCTGAGCGTCAACACTCCAAGGGCGGCATCCCGGGCGTCTTCTTCTCCTACGACATCTCGCCG ATGAAGGTTGTCAACCGCGAGGAGCAGTCCAAGTCGTTCCTCGGCTTCCTCGCGGGTCTCTGTGCCATCGTGGGC GGCACCTTGACAGTGGCGGCTGCCGTCGACAGGGGGCTGTTCGAGGGCGCGACGCGGCTGAAGAAGATGCGGTCC AAGGACCTGTGA
Gene	>Ophcf2\|04424 ATGCCGGCCAAGTCACGCTTCACCAGGCTCGATGCCTTTACGAAGACGGTCGACGAGGCTCGTATCCGGACAACG AGCGGTGGCGTCGTCACCATCGTTTCGCTGCTTGTCGTCTTGTTTCTATCGTGGGGAGAATGGGCCGAGTATCGT CGGGTGGTGATACGCCCCGAGCTGGTGGTGGACAAGGGCAGAGGCGAGTCGCAATCGCTGGCTTGTCGTCTTGCG GCGTGGCTGACCCTCTTCTTCGATACCTAGGCGAGCGCATGGAGATACACCTCAACTTTACCTTTCCCAAGATGC CTTGTGAGCTGCTCACGCTGGATGTCATGGACGTCTCGGGCGAACAGCAGCATGGCGTCGCCCACGGCGTCAGCA AGGTCCGGCTGCAGCCTCAGTCTCAGGGCGGTGGCGTCATCGACATCAAGTCGCTGGCTCTTCATGACGAAAAGG CCGATCACTTGGATCCCAAGTACTGCGGCGAGTGTTACGGAGCCTCGCCCCCCGCCACGGCCAAGAAGTCGGGCT GCTGCAACACGTGCGACGAGGTTCGCGAGGCCTACTCCGCTCAGGGATGGGCCTTTGGGAGGGGAGAGGGCGTCG AGCAGTGCGAGCGCGAGCACTATGCCGAGAAGCTCGATGCGCAGAGAGAGGAGGGCTGTCGTATCGAGGGAGCTT TGCAGGTCAACAAGGTGGTTGGGAACTTTCACATGGCTCCTGGACGCAGTTTCAGCAACGGAAATATTCACGTTC ACGACCTCAAGAACTACTGGGATACGCCCGACGGGAAGAAGCACGACTTTACACACACCATTCATCAGCTGCGTT TCGGCCCTCAGCTGCCGGACGACGTCAAGAAGAGGCTGGGCGGCTCCGGGGCTATGCCGTGGACGAATCATCACC TCAATCCGCTGGATGGGTCTCAGCACGACACGACTGATTCGAACCTCAACTACATGTACTTTGTCAAGATCGTCC CGACGTCGTATCTGCCTCTCGGATGGGAGAAGAAGATGCAGCGGCTCTCGGGAACCCTGGACGGCGATGGCAGCG TCGAGACGCACCAGTACTCCGTCACCAGTCACAAGCGAAGTCTCAGCGGCGGGAACGATGCGGCAGAGGGCCATG CTGAGCGTCAACACTCCAAGGGCGGCATCCCGGGCGTCTTCTTCTCCTACGTAAGTCCCCTTCTTTGCATAATCC TCCCATCTCATGGTGTTGCTGACAGCCGGGCACAAGGACATCTCGCCGATGAAGGTTGTCAACCGCGAGGAGCAG TCCAAGTCGTTCCTCGGCTTCCTCGCGGGTCTCTGTGCCATCGTGGGCGGCACCTTGACAGTGGCGGCTGCCGTC GACAGGGGGCTGTTCGAGGGCGCGACGCGGCTGAAGAAGATGCGGTCCAAGGACCTGTGA

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