Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04419
Gene name
Locationscaffold_04:3198935..3200136
Strand-
Gene length (bp)1201
Transcript length (bp)1140
Coding sequence length (bp)1140
Protein length (aa) 380

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain 2.2E-23 99 245
PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain 8.2E-24 69 367

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003899 DNA-directed 5'-3' RNA polymerase activity Yes
GO:0006351 transcription, DNA-templated Yes
GO:0140098 catalytic activity, acting on RNA No
GO:0009059 macromolecule biosynthetic process No
GO:0018130 heterocycle biosynthetic process No
GO:0043170 macromolecule metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0009058 biosynthetic process No
GO:0005488 binding No
GO:0016740 transferase activity No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0008152 metabolic process No
GO:0016779 nucleotidyltransferase activity No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0009987 cellular process No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0044237 cellular metabolic process No
GO:0003674 molecular_function No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0008150 biological_process No
GO:0019438 aromatic compound biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0005515 protein binding No
GO:0097659 nucleic acid-templated transcription No
GO:0090304 nucleic acid metabolic process No
GO:0003824 catalytic activity No
GO:0016070 RNA metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0097747 RNA polymerase activity No
GO:0032774 RNA biosynthetic process No
GO:0034062 5'-3' RNA polymerase activity No
GO:0006725 cellular aromatic compound metabolic process No
GO:0071704 organic substance metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.5652 0.5806 0.0335 0.0914 0.1734 0.0071 0.228 0.1827 0.0521 0.0022

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup3940
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7969
Ophiocordyceps australis map64 (Brazil) OphauB2|2932
Ophiocordyceps camponoti-floridani Ophcf2|04419 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|6978
Ophiocordyceps kimflemingae Ophio5|345
Ophiocordyceps subramaniannii Hirsu2|7841

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04419
MAPSQDWRQQSASDSSQRKMVGINKETVTDVTSTDFPGHVPNEDAEFELEGFRQGLRVEFHENDGLNASFSLIGL
DASLANAFRRILISEIPTLAVENVFIENNTSVVQDEVLAHRLGLIPFNGGRRGIHHFLRWHVKAAETNGDPYATC
FDWNTVQLELNVTCSVNPDAAPDEKDPTKAFRNAHVYARDIVFVPTGKQVQYFSGQDAIRPVHPDILIAKLRPRQ
SINLSMHMHKGIGADHAKFSPVATASYRLMPTITITEPIVGDDAVKFAKCFPEGVIGLEEITEEEALRLGSPYEG
HAGELKAVVVDPMKDTVSRECLRHPEFEGKVKLGRRRDHFIYSIESTGQWDSDELFLESVKHLKLKCKILEQQVV
NMAL*
Coding >Ophcf2|04419
ATGGCACCCTCGCAAGACTGGCGCCAACAGAGCGCCTCCGACTCATCCCAACGAAAAATGGTGGGCATCAATAAA
GAGACAGTCACGGACGTAACGTCGACGGATTTCCCGGGGCACGTACCCAACGAAGACGCAGAGTTCGAACTCGAG
GGGTTTCGCCAGGGCCTGAGGGTCGAATTCCATGAAAACGACGGTCTAAACGCCTCCTTCTCGCTAATCGGACTC
GACGCCTCCCTCGCCAACGCCTTCCGCCGAATCCTCATCTCGGAGATTCCGACGCTCGCGGTGGAAAACGTCTTC
ATTGAGAATAATACCTCGGTTGTTCAGGATGAGGTCTTGGCTCATCGCTTGGGTCTCATTCCTTTTAATGGGGGG
AGACGTGGCATTCATCACTTCTTGAGATGGCATGTCAAGGCGGCGGAGACGAATGGGGATCCGTACGCTACTTGC
TTTGACTGGAATACGGTGCAGTTGGAGCTTAATGTTACTTGCTCTGTTAATCCCGACGCTGCTCCCGATGAGAAG
GATCCGACAAAGGCGTTTCGAAATGCGCACGTTTACGCCAGGGATATAGTCTTCGTTCCGACGGGGAAGCAGGTT
CAGTACTTTTCCGGCCAAGACGCCATCCGACCCGTCCATCCGGATATCCTCATCGCAAAGTTACGTCCCCGTCAA
TCCATCAACCTCTCCATGCACATGCACAAGGGCATCGGCGCAGATCACGCCAAGTTTTCGCCCGTGGCTACCGCT
TCTTACCGCCTCATGCCGACCATTACCATTACCGAACCCATCGTGGGTGACGACGCCGTCAAGTTTGCAAAGTGC
TTCCCCGAGGGTGTCATTGGCCTTGAGGAGATTACCGAGGAGGAGGCTCTCCGTCTGGGTAGCCCCTACGAGGGC
CACGCCGGCGAGCTCAAGGCTGTCGTCGTGGATCCCATGAAGGATACCGTCAGCAGAGAGTGTCTGCGTCACCCG
GAGTTTGAGGGCAAGGTCAAGCTTGGCCGAAGGAGAGACCATTTCATCTACTCCATCGAGAGCACCGGCCAGTGG
GATAGCGACGAGCTGTTCCTCGAGTCGGTCAAGCATCTCAAGCTCAAGTGTAAGATTCTAGAGCAGCAAGTCGTC
AACATGGCATTGTGA
Transcript >Ophcf2|04419
ATGGCACCCTCGCAAGACTGGCGCCAACAGAGCGCCTCCGACTCATCCCAACGAAAAATGGTGGGCATCAATAAA
GAGACAGTCACGGACGTAACGTCGACGGATTTCCCGGGGCACGTACCCAACGAAGACGCAGAGTTCGAACTCGAG
GGGTTTCGCCAGGGCCTGAGGGTCGAATTCCATGAAAACGACGGTCTAAACGCCTCCTTCTCGCTAATCGGACTC
GACGCCTCCCTCGCCAACGCCTTCCGCCGAATCCTCATCTCGGAGATTCCGACGCTCGCGGTGGAAAACGTCTTC
ATTGAGAATAATACCTCGGTTGTTCAGGATGAGGTCTTGGCTCATCGCTTGGGTCTCATTCCTTTTAATGGGGGG
AGACGTGGCATTCATCACTTCTTGAGATGGCATGTCAAGGCGGCGGAGACGAATGGGGATCCGTACGCTACTTGC
TTTGACTGGAATACGGTGCAGTTGGAGCTTAATGTTACTTGCTCTGTTAATCCCGACGCTGCTCCCGATGAGAAG
GATCCGACAAAGGCGTTTCGAAATGCGCACGTTTACGCCAGGGATATAGTCTTCGTTCCGACGGGGAAGCAGGTT
CAGTACTTTTCCGGCCAAGACGCCATCCGACCCGTCCATCCGGATATCCTCATCGCAAAGTTACGTCCCCGTCAA
TCCATCAACCTCTCCATGCACATGCACAAGGGCATCGGCGCAGATCACGCCAAGTTTTCGCCCGTGGCTACCGCT
TCTTACCGCCTCATGCCGACCATTACCATTACCGAACCCATCGTGGGTGACGACGCCGTCAAGTTTGCAAAGTGC
TTCCCCGAGGGTGTCATTGGCCTTGAGGAGATTACCGAGGAGGAGGCTCTCCGTCTGGGTAGCCCCTACGAGGGC
CACGCCGGCGAGCTCAAGGCTGTCGTCGTGGATCCCATGAAGGATACCGTCAGCAGAGAGTGTCTGCGTCACCCG
GAGTTTGAGGGCAAGGTCAAGCTTGGCCGAAGGAGAGACCATTTCATCTACTCCATCGAGAGCACCGGCCAGTGG
GATAGCGACGAGCTGTTCCTCGAGTCGGTCAAGCATCTCAAGCTCAAGTGTAAGATTCTAGAGCAGCAAGTCGTC
AACATGGCATTGTGA
Gene >Ophcf2|04419
ATGGCACCCTCGCAAGACTGGCGCCAACAGAGCGCCTCCGACTCATCCCAACGAAAAGTAAGACATCCACCACCC
CGCAAGCAAAAGCAAAAGCAAGGAGAGAACTAAGACGGTCAAGATGGTGGGCATCAATAAAGAGACAGTCACGGA
CGTAACGTCGACGGATTTCCCGGGGCACGTACCCAACGAAGACGCAGAGTTCGAACTCGAGGGGTTTCGCCAGGG
CCTGAGGGTCGAATTCCATGAAAACGACGGTCTAAACGCCTCCTTCTCGCTAATCGGACTCGACGCCTCCCTCGC
CAACGCCTTCCGCCGAATCCTCATCTCGGAGATTCCGACGCTCGCGGTGGAAAACGTCTTCATTGAGAATAATAC
CTCGGTTGTTCAGGATGAGGTCTTGGCTCATCGCTTGGGTCTCATTCCTTTTAATGGGGGGAGACGTGGCATTCA
TCACTTCTTGAGATGGCATGTCAAGGCGGCGGAGACGAATGGGGATCCGTACGCTACTTGCTTTGACTGGAATAC
GGTGCAGTTGGAGCTTAATGTTACTTGCTCTGTTAATCCCGACGCTGCTCCCGATGAGAAGGATCCGACAAAGGC
GTTTCGAAATGCGCACGTTTACGCCAGGGATATAGTCTTCGTTCCGACGGGGAAGCAGGTTCAGTACTTTTCCGG
CCAAGACGCCATCCGACCCGTCCATCCGGATATCCTCATCGCAAAGTTACGTCCCCGTCAATCCATCAACCTCTC
CATGCACATGCACAAGGGCATCGGCGCAGATCACGCCAAGTTTTCGCCCGTGGCTACCGCTTCTTACCGCCTCAT
GCCGACCATTACCATTACCGAACCCATCGTGGGTGACGACGCCGTCAAGTTTGCAAAGTGCTTCCCCGAGGGTGT
CATTGGCCTTGAGGAGATTACCGAGGAGGAGGCTCTCCGTCTGGGTAGCCCCTACGAGGGCCACGCCGGCGAGCT
CAAGGCTGTCGTCGTGGATCCCATGAAGGATACCGTCAGCAGAGAGTGTCTGCGTCACCCGGAGTTTGAGGGCAA
GGTCAAGCTTGGCCGAAGGAGAGACCATTTCATCTACTCCATCGAGAGCACCGGCCAGTGGGATAGCGACGAGCT
GTTCCTCGAGTCGGTCAAGCATCTCAAGCTCAAGTGTAAGATTCTAGAGCAGCAAGTCGTCAACATGGCATTGTG
A

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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