© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04400 |
| Gene name | |
| Location | scaffold_04:3146573..3147192 |
| Strand | - |
| Gene length (bp) | 619 |
| Transcript length (bp) | 465 |
| Coding sequence length (bp) | 465 |
| Protein length (aa) | 155 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09446 | VMA21 | VMA21-like domain | 9.3E-15 | 80 | 135 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0043933 | protein-containing complex organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0009987 | cellular process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0016043 | cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 82 | 104 | 22 |
| 2 | 114 | 136 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 69.21 | 31.23 | 107.19 |
| Alive | In ants, during behavior modification | 138.13 | 70.82 | 205.45 |
| Dead | In ants, recently dead | 100.47 | 49.26 | 151.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.001409 | yes |
| Alive | Dead | 0.089776 | no |
| Dead | Fungus | 0.121387 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04400 MYYIATTKHRHPQSHHLVLPHHVPSIPQPSSPQHHQSSLTTQILTSQLQWQPAASPLNPPPPSPPTPSSPSNISP AVPKHVIVKLLAFTLAMIVLPIGSYFITVDTVFKGNSSYAGGFAALLANVVLIAYVIVAMNEDQSDTKSTRKSEG KKDQ* |
| Coding | >Ophcf2|04400 ATGTACTACATCGCAACTACCAAGCATCGCCACCCTCAATCCCATCACCTTGTCCTCCCCCATCACGTGCCCTCA ATCCCTCAACCATCATCCCCTCAACACCACCAATCCTCCCTCACCACCCAAATCCTCACCTCACAACTCCAATGG CAACCCGCCGCATCCCCCCTCAACCCCCCCCCTCCTTCCCCCCCAACCCCATCCTCCCCCTCAAACATCTCCCCC GCGGTCCCCAAACATGTCATCGTCAAGCTGCTCGCCTTCACACTCGCCATGATCGTCCTCCCCATCGGCTCCTAC TTCATCACCGTCGACACCGTCTTCAAGGGCAACTCCTCATACGCTGGCGGCTTCGCTGCCCTGCTGGCCAACGTC GTGCTCATCGCCTACGTCATCGTCGCTATGAACGAGGATCAGTCGGATACAAAGTCGACGAGGAAATCCGAGGGC AAAAAGGATCAATGA |
| Transcript | >Ophcf2|04400 ATGTACTACATCGCAACTACCAAGCATCGCCACCCTCAATCCCATCACCTTGTCCTCCCCCATCACGTGCCCTCA ATCCCTCAACCATCATCCCCTCAACACCACCAATCCTCCCTCACCACCCAAATCCTCACCTCACAACTCCAATGG CAACCCGCCGCATCCCCCCTCAACCCCCCCCCTCCTTCCCCCCCAACCCCATCCTCCCCCTCAAACATCTCCCCC GCGGTCCCCAAACATGTCATCGTCAAGCTGCTCGCCTTCACACTCGCCATGATCGTCCTCCCCATCGGCTCCTAC TTCATCACCGTCGACACCGTCTTCAAGGGCAACTCCTCATACGCTGGCGGCTTCGCTGCCCTGCTGGCCAACGTC GTGCTCATCGCCTACGTCATCGTCGCTATGAACGAGGATCAGTCGGATACAAAGTCGACGAGGAAATCCGAGGGC AAAAAGGATCAATGA |
| Gene | >Ophcf2|04400 ATGTACTACATCGCAACTACCAAGCATCGCCACCCTCAATCCCATCACCTTGTGTCAGCCTGTCACAATTCCTCA ATTCTCCCCTCACGTGACTACAGCCTCCCCCATCACGTGCCCTCAATCCCTCAACCATCATCCCCTCAACACCAC CAATCCTCCCTCACCACCCAAATCCTCACCTCACAACTCCAATGGCAACCCGCCGCATCCCCCCTCAACCCCCCC CCTCCTTCCCCCCCAACCCCATCCTCCCCCTCAAACATCTCCCCCGCGGTCCCCAAGTAAATACCCTTTTACCCC CCCCCCCCTTCTATTCACCGAGGCTGACCATCAGACATGTCATCGTCAAGCTGCTCGCCTTCACACTCGCCATGA TCGTCCTCCCCATCGGCTCCTACTTCATCACCGTCGACACCGTCTTCAAGGGTGAATCTCTTCCATGCCTCTAAC ACTTGATGCGCTGTTCCGGCTGACTCCATTAGGCAACTCCTCATACGCTGGCGGCTTCGCTGCCCTGCTGGCCAA CGTCGTGCTCATCGCCTACGTCATCGTCGCTATGAACGAGGATCAGTCGGATACAAAGTCGACGAGGAAATCCGA GGGCAAAAAGGATCAATGA |