Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04400
Gene name
Locationscaffold_04:3146573..3147192
Strand-
Gene length (bp)619
Transcript length (bp)465
Coding sequence length (bp)465
Protein length (aa) 155

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09446 VMA21 VMA21-like domain 9.3E-15 80 135

GO

GO Term Description Terminal node
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly Yes
GO:0043933 protein-containing complex organization No
GO:0071840 cellular component organization or biogenesis No
GO:0070071 proton-transporting two-sector ATPase complex assembly No
GO:0065003 protein-containing complex assembly No
GO:0008150 biological_process No
GO:0070070 proton-transporting V-type ATPase complex assembly No
GO:0009987 cellular process No
GO:0022607 cellular component assembly No
GO:0016043 cellular component organization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 62 0.45

Transmembrane Domains

Domain # Start End Length
1 82 104 22
2 114 136 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04400
MYYIATTKHRHPQSHHLVLPHHVPSIPQPSSPQHHQSSLTTQILTSQLQWQPAASPLNPPPPSPPTPSSPSNISP
AVPKHVIVKLLAFTLAMIVLPIGSYFITVDTVFKGNSSYAGGFAALLANVVLIAYVIVAMNEDQSDTKSTRKSEG
KKDQ*
Coding >Ophcf2|04400
ATGTACTACATCGCAACTACCAAGCATCGCCACCCTCAATCCCATCACCTTGTCCTCCCCCATCACGTGCCCTCA
ATCCCTCAACCATCATCCCCTCAACACCACCAATCCTCCCTCACCACCCAAATCCTCACCTCACAACTCCAATGG
CAACCCGCCGCATCCCCCCTCAACCCCCCCCCTCCTTCCCCCCCAACCCCATCCTCCCCCTCAAACATCTCCCCC
GCGGTCCCCAAACATGTCATCGTCAAGCTGCTCGCCTTCACACTCGCCATGATCGTCCTCCCCATCGGCTCCTAC
TTCATCACCGTCGACACCGTCTTCAAGGGCAACTCCTCATACGCTGGCGGCTTCGCTGCCCTGCTGGCCAACGTC
GTGCTCATCGCCTACGTCATCGTCGCTATGAACGAGGATCAGTCGGATACAAAGTCGACGAGGAAATCCGAGGGC
AAAAAGGATCAATGA
Transcript >Ophcf2|04400
ATGTACTACATCGCAACTACCAAGCATCGCCACCCTCAATCCCATCACCTTGTCCTCCCCCATCACGTGCCCTCA
ATCCCTCAACCATCATCCCCTCAACACCACCAATCCTCCCTCACCACCCAAATCCTCACCTCACAACTCCAATGG
CAACCCGCCGCATCCCCCCTCAACCCCCCCCCTCCTTCCCCCCCAACCCCATCCTCCCCCTCAAACATCTCCCCC
GCGGTCCCCAAACATGTCATCGTCAAGCTGCTCGCCTTCACACTCGCCATGATCGTCCTCCCCATCGGCTCCTAC
TTCATCACCGTCGACACCGTCTTCAAGGGCAACTCCTCATACGCTGGCGGCTTCGCTGCCCTGCTGGCCAACGTC
GTGCTCATCGCCTACGTCATCGTCGCTATGAACGAGGATCAGTCGGATACAAAGTCGACGAGGAAATCCGAGGGC
AAAAAGGATCAATGA
Gene >Ophcf2|04400
ATGTACTACATCGCAACTACCAAGCATCGCCACCCTCAATCCCATCACCTTGTGTCAGCCTGTCACAATTCCTCA
ATTCTCCCCTCACGTGACTACAGCCTCCCCCATCACGTGCCCTCAATCCCTCAACCATCATCCCCTCAACACCAC
CAATCCTCCCTCACCACCCAAATCCTCACCTCACAACTCCAATGGCAACCCGCCGCATCCCCCCTCAACCCCCCC
CCTCCTTCCCCCCCAACCCCATCCTCCCCCTCAAACATCTCCCCCGCGGTCCCCAAGTAAATACCCTTTTACCCC
CCCCCCCCTTCTATTCACCGAGGCTGACCATCAGACATGTCATCGTCAAGCTGCTCGCCTTCACACTCGCCATGA
TCGTCCTCCCCATCGGCTCCTACTTCATCACCGTCGACACCGTCTTCAAGGGTGAATCTCTTCCATGCCTCTAAC
ACTTGATGCGCTGTTCCGGCTGACTCCATTAGGCAACTCCTCATACGCTGGCGGCTTCGCTGCCCTGCTGGCCAA
CGTCGTGCTCATCGCCTACGTCATCGTCGCTATGAACGAGGATCAGTCGGATACAAAGTCGACGAGGAAATCCGA
GGGCAAAAAGGATCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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