Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04295
Gene name
Location	scaffold_04:2847821..2849471
Strand	-
Gene length (bp)	1650
Transcript length (bp)	1581
Coding sequence length (bp)	1581
Protein length (aa)	527

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03151	TPT	Triose-phosphate Transporter family	3.0E-56	114	437

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 38	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	149	171	22
2	184	206	22
3	216	238	22
4	245	267	22
5	272	291	19
6	318	340	22
7	376	398	22
8	405	427	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	52.99	30.02	75.96
Alive	In ants, during behavior modification	52.32	29.63	75.00
Dead	In ants, recently dead	66.92	38.45	95.40

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.961630	no
Alive	Dead	0.140716	no
Dead	Fungus	0.232493	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04295 MEKFPDHIDSPSFVVQEASPPTPPGPPSKHHQAANGSANGVGNGFENPASSLLTDRWMPRRDEALASSLSAPRTG RNRQKSLSDAFRTIRSRNGSVSQNAHEIADALRAPVSPKLVALCLLWYTSSALTNTSSKSILIAFDKPATLTLVQ FAFVSSLCIILAWLASVFPVLPSTMAVLRHPIRRPSAHVISTTLPLAAFQIGGHLLSSTATAKIPVSLVHTIKGL SPLFTVLAYRIFYDIKYPRATYFSLVPLTTGVMLACSGKVTYGGQLAGVLQALLATLIFVSQNIVSKKIFNEAAK AEAEVPGTQSRKLDKLNLLCYSSGMAFVVTLPIWFWTEGIALVGDVLHDGAVDLSNHPLAMDHGRLTLEFIFNGV FHFSQNMLAFVLLSMVSPVTYSVASLIKRVFVIVMAIVWFRSPTTPIQAVGIALTFLGLYLYDRSSESNKADRKA RAIAHTRSATPLLPLDEKPARGNDGSPDPSANSSPHAYTEGYLGPTAASHDSKKSDVRVGRSRSGGSSTTSWLRG Q*
Coding	>Ophcf2\|04295 ATGGAAAAGTTCCCCGATCACATCGATTCGCCGTCGTTTGTGGTGCAGGAAGCATCCCCGCCTACGCCTCCGGGT CCTCCGTCGAAGCACCACCAGGCCGCCAATGGCAGCGCCAATGGTGTCGGGAACGGCTTCGAGAATCCCGCCTCG TCGTTGCTGACAGATCGCTGGATGCCCAGACGAGATGAAGCGCTCGCCTCGTCTTTGTCTGCGCCGAGGACAGGT CGCAATCGCCAGAAGAGCTTGAGCGATGCCTTTCGCACGATTCGGTCGAGGAACGGAAGCGTCAGCCAGAATGCC CATGAAATTGCCGACGCGCTACGGGCTCCTGTGTCTCCCAAGCTCGTCGCCCTCTGCCTGCTCTGGTACACGTCC TCGGCCCTGACAAACACGTCGTCCAAGTCGATCCTCATCGCCTTCGACAAGCCAGCCACCCTCACCCTCGTCCAA TTCGCCTTCGTCTCCTCGCTCTGCATCATCCTCGCCTGGCTGGCCAGCGTCTTTCCCGTTCTGCCCTCCACGATG GCCGTCCTCCGGCACCCAATTCGAAGGCCCAGTGCCCATGTCATCTCTACCACGCTTCCCCTCGCCGCCTTTCAG ATCGGAGGCCACCTCTTGAGCTCGACGGCCACGGCCAAGATCCCCGTCTCCCTCGTCCACACCATCAAGGGCCTC TCCCCTCTCTTCACCGTCTTGGCCTATAGAATATTCTACGATATCAAGTACCCCCGAGCCACCTACTTCTCTCTC GTGCCCCTGACCACCGGCGTCATGCTCGCCTGCTCGGGCAAGGTCACGTACGGCGGTCAGTTGGCAGGCGTGCTT CAGGCTCTTCTCGCCACGCTCATCTTTGTCTCGCAAAACATTGTGTCCAAGAAAATCTTCAACGAGGCCGCAAAA GCCGAGGCCGAGGTTCCCGGCACGCAGTCGAGGAAACTAGACAAGCTCAACCTCTTATGCTACTCGTCTGGCATG GCCTTTGTCGTCACCCTACCCATCTGGTTCTGGACAGAAGGTATCGCTCTCGTCGGAGACGTCCTGCACGACGGC GCCGTCGACCTCAGCAACCACCCTCTGGCCATGGATCACGGCCGCCTAACTCTCGAGTTCATCTTCAACGGCGTC TTCCACTTCAGCCAAAATATGCTAGCCTTTGTTCTCTTATCCATGGTCTCGCCCGTCACGTACTCCGTCGCCAGC CTCATCAAGAGAGTCTTCGTCATCGTCATGGCCATCGTCTGGTTCAGGAGCCCGACGACTCCGATTCAAGCCGTC GGCATCGCCCTCACCTTCCTCGGTCTGTATCTCTACGACCGTTCGAGTGAGAGCAACAAGGCCGACCGCAAGGCG CGCGCCATAGCCCACACCCGCTCCGCCACGCCTCTCTTACCGCTCGACGAGAAGCCAGCCAGGGGCAACGACGGC AGCCCCGACCCGTCAGCCAATTCAAGCCCGCACGCCTACACTGAAGGCTACTTGGGCCCGACCGCTGCCAGTCAC GACTCCAAGAAGTCGGACGTCAGGGTCGGCCGCAGCCGTTCAGGGGGCAGCAGCACTACGAGCTGGTTGCGAGGC CAATGA
Transcript	>Ophcf2\|04295 ATGGAAAAGTTCCCCGATCACATCGATTCGCCGTCGTTTGTGGTGCAGGAAGCATCCCCGCCTACGCCTCCGGGT CCTCCGTCGAAGCACCACCAGGCCGCCAATGGCAGCGCCAATGGTGTCGGGAACGGCTTCGAGAATCCCGCCTCG TCGTTGCTGACAGATCGCTGGATGCCCAGACGAGATGAAGCGCTCGCCTCGTCTTTGTCTGCGCCGAGGACAGGT CGCAATCGCCAGAAGAGCTTGAGCGATGCCTTTCGCACGATTCGGTCGAGGAACGGAAGCGTCAGCCAGAATGCC CATGAAATTGCCGACGCGCTACGGGCTCCTGTGTCTCCCAAGCTCGTCGCCCTCTGCCTGCTCTGGTACACGTCC TCGGCCCTGACAAACACGTCGTCCAAGTCGATCCTCATCGCCTTCGACAAGCCAGCCACCCTCACCCTCGTCCAA TTCGCCTTCGTCTCCTCGCTCTGCATCATCCTCGCCTGGCTGGCCAGCGTCTTTCCCGTTCTGCCCTCCACGATG GCCGTCCTCCGGCACCCAATTCGAAGGCCCAGTGCCCATGTCATCTCTACCACGCTTCCCCTCGCCGCCTTTCAG ATCGGAGGCCACCTCTTGAGCTCGACGGCCACGGCCAAGATCCCCGTCTCCCTCGTCCACACCATCAAGGGCCTC TCCCCTCTCTTCACCGTCTTGGCCTATAGAATATTCTACGATATCAAGTACCCCCGAGCCACCTACTTCTCTCTC GTGCCCCTGACCACCGGCGTCATGCTCGCCTGCTCGGGCAAGGTCACGTACGGCGGTCAGTTGGCAGGCGTGCTT CAGGCTCTTCTCGCCACGCTCATCTTTGTCTCGCAAAACATTGTGTCCAAGAAAATCTTCAACGAGGCCGCAAAA GCCGAGGCCGAGGTTCCCGGCACGCAGTCGAGGAAACTAGACAAGCTCAACCTCTTATGCTACTCGTCTGGCATG GCCTTTGTCGTCACCCTACCCATCTGGTTCTGGACAGAAGGTATCGCTCTCGTCGGAGACGTCCTGCACGACGGC GCCGTCGACCTCAGCAACCACCCTCTGGCCATGGATCACGGCCGCCTAACTCTCGAGTTCATCTTCAACGGCGTC TTCCACTTCAGCCAAAATATGCTAGCCTTTGTTCTCTTATCCATGGTCTCGCCCGTCACGTACTCCGTCGCCAGC CTCATCAAGAGAGTCTTCGTCATCGTCATGGCCATCGTCTGGTTCAGGAGCCCGACGACTCCGATTCAAGCCGTC GGCATCGCCCTCACCTTCCTCGGTCTGTATCTCTACGACCGTTCGAGTGAGAGCAACAAGGCCGACCGCAAGGCG CGCGCCATAGCCCACACCCGCTCCGCCACGCCTCTCTTACCGCTCGACGAGAAGCCAGCCAGGGGCAACGACGGC AGCCCCGACCCGTCAGCCAATTCAAGCCCGCACGCCTACACTGAAGGCTACTTGGGCCCGACCGCTGCCAGTCAC GACTCCAAGAAGTCGGACGTCAGGGTCGGCCGCAGCCGTTCAGGGGGCAGCAGCACTACGAGCTGGTTGCGAGGC CAATGA
Gene	>Ophcf2\|04295 ATGGAAAAGTTCCCCGATCACATCGATTCGCCGTCGTTTGTGGTGCAGGAAGCATCCCCGCCTACGCCTCCGGGT CCTCCGTCGAAGCACCACCAGGCCGCCAATGGCAGCGCCAATGGTGTCGGGAACGGCTTCGAGAATCCCGCCTCG TCGTTGCTGACAGATCGCTGGATGCCCAGACGAGATGAAGCGCTCGCCTCGTCTTTGTCTGCGCCGAGGACAGGT CGCAATCGCCAGAAGAGCTTGAGCGATGCCTTTCGCACGATTCGGTCGAGGAACGGAAGCGTCAGCCAGAATGCC CATGAAATTGCCGACGCGCTACGGGCTCCTGTGTCTCCCAAGCTCGTCGTGCGTCATTGATCCATCCATCCACTC ATTTCCTCATCGCTTCAGTCGCTGACGACGGCCTAAAAAAAGGCCCTCTGCCTGCTCTGGTACACGTCCTCGGCC CTGACAAACACGTCGTCCAAGTCGATCCTCATCGCCTTCGACAAGCCAGCCACCCTCACCCTCGTCCAATTCGCC TTCGTCTCCTCGCTCTGCATCATCCTCGCCTGGCTGGCCAGCGTCTTTCCCGTTCTGCCCTCCACGATGGCCGTC CTCCGGCACCCAATTCGAAGGCCCAGTGCCCATGTCATCTCTACCACGCTTCCCCTCGCCGCCTTTCAGATCGGA GGCCACCTCTTGAGCTCGACGGCCACGGCCAAGATCCCCGTCTCCCTCGTCCACACCATCAAGGGCCTCTCCCCT CTCTTCACCGTCTTGGCCTATAGAATATTCTACGATATCAAGTACCCCCGAGCCACCTACTTCTCTCTCGTGCCC CTGACCACCGGCGTCATGCTCGCCTGCTCGGGCAAGGTCACGTACGGCGGTCAGTTGGCAGGCGTGCTTCAGGCT CTTCTCGCCACGCTCATCTTTGTCTCGCAAAACATTGTGTCCAAGAAAATCTTCAACGAGGCCGCAAAAGCCGAG GCCGAGGTTCCCGGCACGCAGTCGAGGAAACTAGACAAGCTCAACCTCTTATGCTACTCGTCTGGCATGGCCTTT GTCGTCACCCTACCCATCTGGTTCTGGACAGAAGGTATCGCTCTCGTCGGAGACGTCCTGCACGACGGCGCCGTC GACCTCAGCAACCACCCTCTGGCCATGGATCACGGCCGCCTAACTCTCGAGTTCATCTTCAACGGCGTCTTCCAC TTCAGCCAAAATATGCTAGCCTTTGTTCTCTTATCCATGGTCTCGCCCGTCACGTACTCCGTCGCCAGCCTCATC AAGAGAGTCTTCGTCATCGTCATGGCCATCGTCTGGTTCAGGAGCCCGACGACTCCGATTCAAGCCGTCGGCATC GCCCTCACCTTCCTCGGTCTGTATCTCTACGACCGTTCGAGTGAGAGCAACAAGGCCGACCGCAAGGCGCGCGCC ATAGCCCACACCCGCTCCGCCACGCCTCTCTTACCGCTCGACGAGAAGCCAGCCAGGGGCAACGACGGCAGCCCC GACCCGTCAGCCAATTCAAGCCCGCACGCCTACACTGAAGGCTACTTGGGCCCGACCGCTGCCAGTCACGACTCC AAGAAGTCGGACGTCAGGGTCGGCCGCAGCCGTTCAGGGGGCAGCAGCACTACGAGCTGGTTGCGAGGCCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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